SNRPB 29483

Name: SNRPB	Sequence: fasta or formatted (231aa)		NCBI GI: 4507125
Description: small nuclear ribonucleoprotein polypeptide B/B' isoform B		Referenced in: Small RNAs in RNA Processing Capping and Splicing
Other entries for this name: alt prot [240aa] small nuclear ribonucleoprotein polypeptide B/B' isoform B'
Composition: Amino acid Percentage Count Longest homopolymer A alanine 10.0 23 7 C cysteine 1.3 3 1 D aspartate 2.6 6 1 E glutamate 2.6 6 2 F phenylalanine 1.7 4 1 G glycine 16.9 39 2 H histidine 0.9 2 1 I isoleucine 4.8 11 1 K lysine 4.3 10 1 L leucine 5.6 13 2 M methionine 7.4 17 2 N asparagine 1.3 3 1 P proline 17.3 40 4 Q glutamine 3.5 8 2 R arginine 7.8 18 1 S serine 2.6 6 2 T threonine 3.9 9 1 V valine 4.8 11 1 W tryptophan 0.0 0 0 Y tyrosine 0.9 2 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 small nuclear ribonucleoprotein polypeptide B/B' isof... SNRPB 0.993 small nuclear ribonucleoprotein polypeptide B/B' iso... SNRPN 0.935 small nuclear ribonucleoprotein polypeptide N SNRPN 0.935 small nuclear ribonucleoprotein polypeptide N SNRPN 0.935 small nuclear ribonucleoprotein polypeptide N SNRPN 0.935 small nuclear ribonucleoprotein polypeptide N SNRPN 0.935 small nuclear ribonucleoprotein polypeptide N LOC100133224 0.455 PREDICTED: similar to hCG2041320 LOC100133224 0.455 PREDICTED: similar to hCG2041320 LOC100133224 0.455 PREDICTED: similar to hCG2041320 SF3B4 0.109 splicing factor 3b, subunit 4 COL22A1 0.089 collagen, type XXII, alpha 1 COLEC12 0.089 collectin sub-family member 12 SAMD1 0.087 sterile alpha motif domain containing 1 COL2A1 0.087 collagen, type II, alpha 1 isoform 1 precursor [Hom... COL2A1 0.087 collagen, type II, alpha 1 isoform 2 precursor [Hom... COL5A1 0.087 alpha 1 type V collagen preproprotein SFPQ 0.087 splicing factor proline/glutamine rich (polypyrimidin... FMN2 0.085 formin 2 COL1A1 0.085 alpha 1 type I collagen preproprotein ANXA11 0.085 annexin A11 ANXA11 0.085 annexin A11 ANXA11 0.085 annexin A11 WBP11 0.083 WW domain binding protein 11 PRB2 0.083 proline-rich protein BstNI subfamily 2 FMN1 0.081 formin 1 SF1 0.081 splicing factor 1 isoform 3 SF1 0.081 splicing factor 1 isoform 2 SF1 0.081 splicing factor 1 isoform 1 ELN 0.078 elastin isoform e precursor Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.