Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Search of human proteins with 239753928

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239753928 PREDICTED: hypothetical protein [Homo sapiens]
         (1179 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239753928 PREDICTED: hypothetical protein [Homo sapiens]          2378   0.0  
gi|239748470 PREDICTED: hypothetical protein [Homo sapiens]          1543   0.0  
gi|239742434 PREDICTED: hypothetical protein XP_002342514 [Homo ...  1543   0.0  
gi|116256354 alpha 2 type IV collagen preproprotein [Homo sapiens]     42   0.003
gi|48762934 alpha 2 type I collagen [Homo sapiens]                     41   0.006
gi|61966741 TMF regulated nuclear protein [Homo sapiens]               40   0.010
gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens]                40   0.010
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]          40   0.017
gi|11386161 alpha 2 type IX collagen [Homo sapiens]                    39   0.038
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho...    38   0.050
gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Ho...    38   0.050
gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Ho...    38   0.050
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]      38   0.050
gi|239757699 PREDICTED: hypothetical protein [Homo sapiens]            37   0.085
gi|239752184 PREDICTED: hypothetical protein XP_002348161 [Homo ...    37   0.085
gi|239746707 PREDICTED: hypothetical protein XP_002343834 [Homo ...    37   0.085
gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens]                37   0.085
gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens]    37   0.085
gi|146219832 myosin light chain kinase 3 [Homo sapiens]                37   0.085
gi|154759255 collagen, type XXVIII precursor [Homo sapiens]            37   0.085
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]      37   0.11 
gi|119829187 alpha 1 type XVII collagen [Homo sapiens]                 37   0.11 
gi|29725624 collagen, type XXIII, alpha 1 [Homo sapiens]               37   0.11 
gi|88702793 slit-like 2 [Homo sapiens]                                 37   0.11 
gi|157502197 hypothetical protein LOC9772 [Homo sapiens]               37   0.11 
gi|122937269 Wilms tumor 1 interacting protein [Homo sapiens]          37   0.11 
gi|238859655 tetratricopeptide repeat domain 31 [Homo sapiens]         37   0.14 
gi|169173184 PREDICTED: hypothetical protein [Homo sapiens]            37   0.14 
gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein ...    36   0.19 
gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein ...    36   0.19 

>gi|239753928 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 1179

 Score = 2378 bits (6162), Expect = 0.0
 Identities = 1179/1179 (100%), Positives = 1179/1179 (100%)

Query: 1    MHGEVGKPDNLQGDTAHHRIPKAYGEVQLPATDPVWAEVSLHRLNPRRQERTGTHHFRKG 60
            MHGEVGKPDNLQGDTAHHRIPKAYGEVQLPATDPVWAEVSLHRLNPRRQERTGTHHFRKG
Sbjct: 1    MHGEVGKPDNLQGDTAHHRIPKAYGEVQLPATDPVWAEVSLHRLNPRRQERTGTHHFRKG 60

Query: 61   LRILPSVVRLESFRRREALSPAPLAFRGASVLALGPSADSGRFLGARALLARLKVLLSLG 120
            LRILPSVVRLESFRRREALSPAPLAFRGASVLALGPSADSGRFLGARALLARLKVLLSLG
Sbjct: 61   LRILPSVVRLESFRRREALSPAPLAFRGASVLALGPSADSGRFLGARALLARLKVLLSLG 120

Query: 121  AASSGSPFTLSCRCDTVRVMPGALATGGRSVLMLREEEATVFRAKLGTRGSSWGTLGTDG 180
            AASSGSPFTLSCRCDTVRVMPGALATGGRSVLMLREEEATVFRAKLGTRGSSWGTLGTDG
Sbjct: 121  AASSGSPFTLSCRCDTVRVMPGALATGGRSVLMLREEEATVFRAKLGTRGSSWGTLGTDG 180

Query: 181  VLGSSLGLSGPSEWARQVLFSSGFCLGRFLSGLALGFLKEPLGCRGTSLPGRVLLEPLLP 240
            VLGSSLGLSGPSEWARQVLFSSGFCLGRFLSGLALGFLKEPLGCRGTSLPGRVLLEPLLP
Sbjct: 181  VLGSSLGLSGPSEWARQVLFSSGFCLGRFLSGLALGFLKEPLGCRGTSLPGRVLLEPLLP 240

Query: 241  RGSLCSSAPVEALRTEFWRDHTVSVLLGGFWEGPRDDSSGRLQPAPLLDLVMGMTLRMLS 300
            RGSLCSSAPVEALRTEFWRDHTVSVLLGGFWEGPRDDSSGRLQPAPLLDLVMGMTLRMLS
Sbjct: 241  RGSLCSSAPVEALRTEFWRDHTVSVLLGGFWEGPRDDSSGRLQPAPLLDLVMGMTLRMLS 300

Query: 301  FSEAVRVRTDLATAPWLRRALPGLEAPGDASFREPLFGATTSFLLVGLSLGRPPLQLGSL 360
            FSEAVRVRTDLATAPWLRRALPGLEAPGDASFREPLFGATTSFLLVGLSLGRPPLQLGSL
Sbjct: 301  FSEAVRVRTDLATAPWLRRALPGLEAPGDASFREPLFGATTSFLLVGLSLGRPPLQLGSL 360

Query: 361  STETGAGASPGGLDVGLEETWLSPISPTPEDMEPSPSPPSSGSPPLGLESVPSEQSRVSE 420
            STETGAGASPGGLDVGLEETWLSPISPTPEDMEPSPSPPSSGSPPLGLESVPSEQSRVSE
Sbjct: 361  STETGAGASPGGLDVGLEETWLSPISPTPEDMEPSPSPPSSGSPPLGLESVPSEQSRVSE 420

Query: 421  QSVVSEMQNRGLGSLFSGSLLPTDPKAALPGSSGAALPSSSAGLRLPRASLPMGVRLLLL 480
            QSVVSEMQNRGLGSLFSGSLLPTDPKAALPGSSGAALPSSSAGLRLPRASLPMGVRLLLL
Sbjct: 421  QSVVSEMQNRGLGSLFSGSLLPTDPKAALPGSSGAALPSSSAGLRLPRASLPMGVRLLLL 480

Query: 481  ALRDCGPLCPTDSSSIGLKSLRVSWEVSSMPWEPWRLNWASPVTSSCSLIPRANGERGGD 540
            ALRDCGPLCPTDSSSIGLKSLRVSWEVSSMPWEPWRLNWASPVTSSCSLIPRANGERGGD
Sbjct: 481  ALRDCGPLCPTDSSSIGLKSLRVSWEVSSMPWEPWRLNWASPVTSSCSLIPRANGERGGD 540

Query: 541  CAEPRLTGSLYLFRRTLTPWHRALGKAEAWFSGWAAASWLQAGYRGPGLPGAAPGQAVEL 600
            CAEPRLTGSLYLFRRTLTPWHRALGKAEAWFSGWAAASWLQAGYRGPGLPGAAPGQAVEL
Sbjct: 541  CAEPRLTGSLYLFRRTLTPWHRALGKAEAWFSGWAAASWLQAGYRGPGLPGAAPGQAVEL 600

Query: 601  IGLLRAAGGALQEGQQLPVSRGTQGEAGAAGVRGPVGGAGGADGPGVQEREQALCTLLGQ 660
            IGLLRAAGGALQEGQQLPVSRGTQGEAGAAGVRGPVGGAGGADGPGVQEREQALCTLLGQ
Sbjct: 601  IGLLRAAGGALQEGQQLPVSRGTQGEAGAAGVRGPVGGAGGADGPGVQEREQALCTLLGQ 660

Query: 661  QLHIILTAAPAKCPQLPSCPGALLLLLLLQPLQLPQLLRLPVVVMYLNCFVEFGTEISKY 720
            QLHIILTAAPAKCPQLPSCPGALLLLLLLQPLQLPQLLRLPVVVMYLNCFVEFGTEISKY
Sbjct: 661  QLHIILTAAPAKCPQLPSCPGALLLLLLLQPLQLPQLLRLPVVVMYLNCFVEFGTEISKY 720

Query: 721  LKAFIQFHGFFVFTEKIYKGVGLILELLFPAFQFPQLFYGKLRKNKRTHTEKPFLSLDVN 780
            LKAFIQFHGFFVFTEKIYKGVGLILELLFPAFQFPQLFYGKLRKNKRTHTEKPFLSLDVN
Sbjct: 721  LKAFIQFHGFFVFTEKIYKGVGLILELLFPAFQFPQLFYGKLRKNKRTHTEKPFLSLDVN 780

Query: 781  IPAAWRKDNLKTAAVFSRLFFVLSHTPREPSPTLILFTPQPSXXXXXXXNYSYDLYWTGH 840
            IPAAWRKDNLKTAAVFSRLFFVLSHTPREPSPTLILFTPQPS       NYSYDLYWTGH
Sbjct: 781  IPAAWRKDNLKTAAVFSRLFFVLSHTPREPSPTLILFTPQPSXXXXXXXNYSYDLYWTGH 840

Query: 841  AGRTATEVGATGTVSILQSSLPLPPKFLPKSGKQGSLKYKVMSWLSIGNCPLSQLWGKKN 900
            AGRTATEVGATGTVSILQSSLPLPPKFLPKSGKQGSLKYKVMSWLSIGNCPLSQLWGKKN
Sbjct: 841  AGRTATEVGATGTVSILQSSLPLPPKFLPKSGKQGSLKYKVMSWLSIGNCPLSQLWGKKN 900

Query: 901  ENPVEAHFFPNVFEMLYLVLQFWTVSISRNSGTYRHHNKRKGRLGGVFLLPKELLNGLCI 960
            ENPVEAHFFPNVFEMLYLVLQFWTVSISRNSGTYRHHNKRKGRLGGVFLLPKELLNGLCI
Sbjct: 901  ENPVEAHFFPNVFEMLYLVLQFWTVSISRNSGTYRHHNKRKGRLGGVFLLPKELLNGLCI 960

Query: 961  NLVVMFLPGCQGPDVGFASNLLLRNSFPKKASHPLFLTKVAVAVHQRRDTPKDTLPMSHL 1020
            NLVVMFLPGCQGPDVGFASNLLLRNSFPKKASHPLFLTKVAVAVHQRRDTPKDTLPMSHL
Sbjct: 961  NLVVMFLPGCQGPDVGFASNLLLRNSFPKKASHPLFLTKVAVAVHQRRDTPKDTLPMSHL 1020

Query: 1021 PHVPYTQSPTYFSGLHFYGTSRLFFMLGCYRSDVKERSKLLNFFRYENRVSPWARMSNVK 1080
            PHVPYTQSPTYFSGLHFYGTSRLFFMLGCYRSDVKERSKLLNFFRYENRVSPWARMSNVK
Sbjct: 1021 PHVPYTQSPTYFSGLHFYGTSRLFFMLGCYRSDVKERSKLLNFFRYENRVSPWARMSNVK 1080

Query: 1081 EVAGKVEYRQNSNPFHSHMEIKIENTQKNDGFAAVLPAVEMQTHTLQNEWFCTSGPGAQN 1140
            EVAGKVEYRQNSNPFHSHMEIKIENTQKNDGFAAVLPAVEMQTHTLQNEWFCTSGPGAQN
Sbjct: 1081 EVAGKVEYRQNSNPFHSHMEIKIENTQKNDGFAAVLPAVEMQTHTLQNEWFCTSGPGAQN 1140

Query: 1141 EWFCTSGPGAQNEWFCTSGSGAQNEGLGAQLVTHSFGQQ 1179
            EWFCTSGPGAQNEWFCTSGSGAQNEGLGAQLVTHSFGQQ
Sbjct: 1141 EWFCTSGPGAQNEWFCTSGSGAQNEGLGAQLVTHSFGQQ 1179


>gi|239748470 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 889

 Score = 1543 bits (3994), Expect = 0.0
 Identities = 770/771 (99%), Positives = 770/771 (99%)

Query: 1   MHGEVGKPDNLQGDTAHHRIPKAYGEVQLPATDPVWAEVSLHRLNPRRQERTGTHHFRKG 60
           MHGEVGKPDNLQGDTAHHRIPKAYGEVQLPATDPVWAEVSLHRLNPRRQERTGTHHFRKG
Sbjct: 1   MHGEVGKPDNLQGDTAHHRIPKAYGEVQLPATDPVWAEVSLHRLNPRRQERTGTHHFRKG 60

Query: 61  LRILPSVVRLESFRRREALSPAPLAFRGASVLALGPSADSGRFLGARALLARLKVLLSLG 120
           LRILPSVVRLESFRRREALSPAPLAFRGASVLALGPSADSGRFLGARALLARLKVLLSLG
Sbjct: 61  LRILPSVVRLESFRRREALSPAPLAFRGASVLALGPSADSGRFLGARALLARLKVLLSLG 120

Query: 121 AASSGSPFTLSCRCDTVRVMPGALATGGRSVLMLREEEATVFRAKLGTRGSSWGTLGTDG 180
           AASSGSPFTLSCRCDTVRVMPGALATGGRSVLMLREEEATVFRAKLGTRGSSWGTLGTDG
Sbjct: 121 AASSGSPFTLSCRCDTVRVMPGALATGGRSVLMLREEEATVFRAKLGTRGSSWGTLGTDG 180

Query: 181 VLGSSLGLSGPSEWARQVLFSSGFCLGRFLSGLALGFLKEPLGCRGTSLPGRVLLEPLLP 240
           VLGSSLGLSGPSEWARQVLFSSGFCLGRFLSGLALGFLKEPLGCRGTSLPGRVLLEPLLP
Sbjct: 181 VLGSSLGLSGPSEWARQVLFSSGFCLGRFLSGLALGFLKEPLGCRGTSLPGRVLLEPLLP 240

Query: 241 RGSLCSSAPVEALRTEFWRDHTVSVLLGGFWEGPRDDSSGRLQPAPLLDLVMGMTLRMLS 300
           RGSLCSSAPVEALRTEFWRDHTVSVLLGGFWEGPRDDSSGRLQPAPLLDLVMGMTLRMLS
Sbjct: 241 RGSLCSSAPVEALRTEFWRDHTVSVLLGGFWEGPRDDSSGRLQPAPLLDLVMGMTLRMLS 300

Query: 301 FSEAVRVRTDLATAPWLRRALPGLEAPGDASFREPLFGATTSFLLVGLSLGRPPLQLGSL 360
           FSEAVRVRTDLATAPWLRRALPGLEAPGDASFREPLFGATTSFLLVGLSLGRPPLQLGSL
Sbjct: 301 FSEAVRVRTDLATAPWLRRALPGLEAPGDASFREPLFGATTSFLLVGLSLGRPPLQLGSL 360

Query: 361 STETGAGASPGGLDVGLEETWLSPISPTPEDMEPSPSPPSSGSPPLGLESVPSEQSRVSE 420
           STETGAGASPGGLDVGLEETWLSPISPTPEDMEPSPSPPSSGSPPLGLESVPSEQSRVSE
Sbjct: 361 STETGAGASPGGLDVGLEETWLSPISPTPEDMEPSPSPPSSGSPPLGLESVPSEQSRVSE 420

Query: 421 QSVVSEMQNRGLGSLFSGSLLPTDPKAALPGSSGAALPSSSAGLRLPRASLPMGVRLLLL 480
           QSVVSEMQNRGLGSLFSGSLLPTDPKAALPGSSGAALPSSSAGLRLPRASLPMGVRLLLL
Sbjct: 421 QSVVSEMQNRGLGSLFSGSLLPTDPKAALPGSSGAALPSSSAGLRLPRASLPMGVRLLLL 480

Query: 481 ALRDCGPLCPTDSSSIGLKSLRVSWEVSSMPWEPWRLNWASPVTSSCSLIPRANGERGGD 540
           ALRDCGPLCPTDSSSIGLKSLRVSWEVSSMPWEPWRLNWASPVTSSCSLIPRANGERGGD
Sbjct: 481 ALRDCGPLCPTDSSSIGLKSLRVSWEVSSMPWEPWRLNWASPVTSSCSLIPRANGERGGD 540

Query: 541 CAEPRLTGSLYLFRRTLTPWHRALGKAEAWFSGWAAASWLQAGYRGPGLPGAAPGQAVEL 600
           CAEPRLTGSLYLFRRTLTPW RALGKAEAWFSGWAAASWLQAGYRGPGLPGAAPGQAVEL
Sbjct: 541 CAEPRLTGSLYLFRRTLTPWRRALGKAEAWFSGWAAASWLQAGYRGPGLPGAAPGQAVEL 600

Query: 601 IGLLRAAGGALQEGQQLPVSRGTQGEAGAAGVRGPVGGAGGADGPGVQEREQALCTLLGQ 660
           IGLLRAAGGALQEGQQLPVSRGTQGEAGAAGVRGPVGGAGGADGPGVQEREQALCTLLGQ
Sbjct: 601 IGLLRAAGGALQEGQQLPVSRGTQGEAGAAGVRGPVGGAGGADGPGVQEREQALCTLLGQ 660

Query: 661 QLHIILTAAPAKCPQLPSCPGALLLLLLLQPLQLPQLLRLPVVVMYLNCFVEFGTEISKY 720
           QLHIILTAAPAKCPQLPSCPGALLLLLLLQPLQLPQLLRLPVVVMYLNCFVEFGTEISKY
Sbjct: 661 QLHIILTAAPAKCPQLPSCPGALLLLLLLQPLQLPQLLRLPVVVMYLNCFVEFGTEISKY 720

Query: 721 LKAFIQFHGFFVFTEKIYKGVGLILELLFPAFQFPQLFYGKLRKNKRTHTE 771
           LKAFIQFHGFFVFTEKIYKGVGLILELLFPAFQFPQLFYGKLRKNKRTHTE
Sbjct: 721 LKAFIQFHGFFVFTEKIYKGVGLILELLFPAFQFPQLFYGKLRKNKRTHTE 771


>gi|239742434 PREDICTED: hypothetical protein XP_002342514 [Homo
           sapiens]
          Length = 889

 Score = 1543 bits (3994), Expect = 0.0
 Identities = 770/771 (99%), Positives = 770/771 (99%)

Query: 1   MHGEVGKPDNLQGDTAHHRIPKAYGEVQLPATDPVWAEVSLHRLNPRRQERTGTHHFRKG 60
           MHGEVGKPDNLQGDTAHHRIPKAYGEVQLPATDPVWAEVSLHRLNPRRQERTGTHHFRKG
Sbjct: 1   MHGEVGKPDNLQGDTAHHRIPKAYGEVQLPATDPVWAEVSLHRLNPRRQERTGTHHFRKG 60

Query: 61  LRILPSVVRLESFRRREALSPAPLAFRGASVLALGPSADSGRFLGARALLARLKVLLSLG 120
           LRILPSVVRLESFRRREALSPAPLAFRGASVLALGPSADSGRFLGARALLARLKVLLSLG
Sbjct: 61  LRILPSVVRLESFRRREALSPAPLAFRGASVLALGPSADSGRFLGARALLARLKVLLSLG 120

Query: 121 AASSGSPFTLSCRCDTVRVMPGALATGGRSVLMLREEEATVFRAKLGTRGSSWGTLGTDG 180
           AASSGSPFTLSCRCDTVRVMPGALATGGRSVLMLREEEATVFRAKLGTRGSSWGTLGTDG
Sbjct: 121 AASSGSPFTLSCRCDTVRVMPGALATGGRSVLMLREEEATVFRAKLGTRGSSWGTLGTDG 180

Query: 181 VLGSSLGLSGPSEWARQVLFSSGFCLGRFLSGLALGFLKEPLGCRGTSLPGRVLLEPLLP 240
           VLGSSLGLSGPSEWARQVLFSSGFCLGRFLSGLALGFLKEPLGCRGTSLPGRVLLEPLLP
Sbjct: 181 VLGSSLGLSGPSEWARQVLFSSGFCLGRFLSGLALGFLKEPLGCRGTSLPGRVLLEPLLP 240

Query: 241 RGSLCSSAPVEALRTEFWRDHTVSVLLGGFWEGPRDDSSGRLQPAPLLDLVMGMTLRMLS 300
           RGSLCSSAPVEALRTEFWRDHTVSVLLGGFWEGPRDDSSGRLQPAPLLDLVMGMTLRMLS
Sbjct: 241 RGSLCSSAPVEALRTEFWRDHTVSVLLGGFWEGPRDDSSGRLQPAPLLDLVMGMTLRMLS 300

Query: 301 FSEAVRVRTDLATAPWLRRALPGLEAPGDASFREPLFGATTSFLLVGLSLGRPPLQLGSL 360
           FSEAVRVRTDLATAPWLRRALPGLEAPGDASFREPLFGATTSFLLVGLSLGRPPLQLGSL
Sbjct: 301 FSEAVRVRTDLATAPWLRRALPGLEAPGDASFREPLFGATTSFLLVGLSLGRPPLQLGSL 360

Query: 361 STETGAGASPGGLDVGLEETWLSPISPTPEDMEPSPSPPSSGSPPLGLESVPSEQSRVSE 420
           STETGAGASPGGLDVGLEETWLSPISPTPEDMEPSPSPPSSGSPPLGLESVPSEQSRVSE
Sbjct: 361 STETGAGASPGGLDVGLEETWLSPISPTPEDMEPSPSPPSSGSPPLGLESVPSEQSRVSE 420

Query: 421 QSVVSEMQNRGLGSLFSGSLLPTDPKAALPGSSGAALPSSSAGLRLPRASLPMGVRLLLL 480
           QSVVSEMQNRGLGSLFSGSLLPTDPKAALPGSSGAALPSSSAGLRLPRASLPMGVRLLLL
Sbjct: 421 QSVVSEMQNRGLGSLFSGSLLPTDPKAALPGSSGAALPSSSAGLRLPRASLPMGVRLLLL 480

Query: 481 ALRDCGPLCPTDSSSIGLKSLRVSWEVSSMPWEPWRLNWASPVTSSCSLIPRANGERGGD 540
           ALRDCGPLCPTDSSSIGLKSLRVSWEVSSMPWEPWRLNWASPVTSSCSLIPRANGERGGD
Sbjct: 481 ALRDCGPLCPTDSSSIGLKSLRVSWEVSSMPWEPWRLNWASPVTSSCSLIPRANGERGGD 540

Query: 541 CAEPRLTGSLYLFRRTLTPWHRALGKAEAWFSGWAAASWLQAGYRGPGLPGAAPGQAVEL 600
           CAEPRLTGSLYLFRRTLTPW RALGKAEAWFSGWAAASWLQAGYRGPGLPGAAPGQAVEL
Sbjct: 541 CAEPRLTGSLYLFRRTLTPWRRALGKAEAWFSGWAAASWLQAGYRGPGLPGAAPGQAVEL 600

Query: 601 IGLLRAAGGALQEGQQLPVSRGTQGEAGAAGVRGPVGGAGGADGPGVQEREQALCTLLGQ 660
           IGLLRAAGGALQEGQQLPVSRGTQGEAGAAGVRGPVGGAGGADGPGVQEREQALCTLLGQ
Sbjct: 601 IGLLRAAGGALQEGQQLPVSRGTQGEAGAAGVRGPVGGAGGADGPGVQEREQALCTLLGQ 660

Query: 661 QLHIILTAAPAKCPQLPSCPGALLLLLLLQPLQLPQLLRLPVVVMYLNCFVEFGTEISKY 720
           QLHIILTAAPAKCPQLPSCPGALLLLLLLQPLQLPQLLRLPVVVMYLNCFVEFGTEISKY
Sbjct: 661 QLHIILTAAPAKCPQLPSCPGALLLLLLLQPLQLPQLLRLPVVVMYLNCFVEFGTEISKY 720

Query: 721 LKAFIQFHGFFVFTEKIYKGVGLILELLFPAFQFPQLFYGKLRKNKRTHTE 771
           LKAFIQFHGFFVFTEKIYKGVGLILELLFPAFQFPQLFYGKLRKNKRTHTE
Sbjct: 721 LKAFIQFHGFFVFTEKIYKGVGLILELLFPAFQFPQLFYGKLRKNKRTHTE 771


>gi|116256354 alpha 2 type IV collagen preproprotein [Homo sapiens]
          Length = 1712

 Score = 42.0 bits (97), Expect = 0.003
 Identities = 29/73 (39%), Positives = 32/73 (43%), Gaps = 9/73 (12%)

Query: 583 GYRGPGLPGAAPGQAVELIGLLRAAGGALQEGQQ---------LPVSRGTQGEAGAAGVR 633
           G+ GP  P   PGQ      + RA GG  QE  Q         LP   G  G  GA G+R
Sbjct: 645 GFLGPPGPAGTPGQIDCDTDVKRAVGGDRQEAIQPGCIGGPKGLPGLPGPPGPTGAKGLR 704

Query: 634 GPVGGAGGADGPG 646
           G  G AG   GPG
Sbjct: 705 GIPGFAGADGGPG 717



 Score = 32.7 bits (73), Expect = 2.1
 Identities = 30/80 (37%), Positives = 34/80 (42%), Gaps = 17/80 (21%)

Query: 583  GYRGP-GLPGAA--PGQAVEL-----IGLLRAAGGALQEGQQ-------LPVSRGTQGEA 627
            GYRGP G PG+A  PG   +       G     G A   G Q       LP  +G +GE 
Sbjct: 1293 GYRGPPGPPGSAALPGSKGDTGNPGAPGTPGTKGWAGDSGPQGRPGVFGLPGEKGPRGEQ 1352

Query: 628  GAAGVRGPVGGAG--GADGP 645
            G  G  GP G  G  G  GP
Sbjct: 1353 GFMGNTGPTGAVGDRGPKGP 1372



 Score = 32.0 bits (71), Expect = 3.6
 Identities = 40/121 (33%), Positives = 47/121 (38%), Gaps = 25/121 (20%)

Query: 580 LQAGYRG-PGLPGAA--PGQAVEL--IGLLRAAGGALQEGQQ---LPVSRGTQGEAGAAG 631
           L  G RG PG PGA   PG   E    GL    G ++ +G Q   LP   G +G  G  G
Sbjct: 357 LAKGARGDPGFPGAQGEPGSQGEPGDPGLPGPPGLSIGDGDQRRGLPGEMGPKGFIGDPG 416

Query: 632 VRGPVGGAGGADG----------PGVQEREQALCTLLGQQLHIILTAAPAKCPQLPSCPG 681
           +    GG  G DG          PG    +  L  L G +         A  P LP  PG
Sbjct: 417 IPALYGGPPGPDGKRGPPGPPGLPGPPGPDGFLFGLKGAK-------GRAGFPGLPGSPG 469

Query: 682 A 682
           A
Sbjct: 470 A 470



 Score = 31.6 bits (70), Expect = 4.7
 Identities = 27/73 (36%), Positives = 31/73 (42%), Gaps = 12/73 (16%)

Query: 587 PGLPGAAPGQAVELIGLLRAAGGALQEGQQLPVSRGTQGEAGAAGVRGPVGGAGGADGPG 646
           PGLPG  PG    L GL  A G A           G  G  G+ G RGP G  G A    
Sbjct: 437 PGLPGP-PGPDGFLFGLKGAKGRA-----------GFPGLPGSPGARGPKGWKGDAGECR 484

Query: 647 VQEREQALCTLLG 659
             E ++A+  L G
Sbjct: 485 CTEGDEAIKGLPG 497


>gi|48762934 alpha 2 type I collagen [Homo sapiens]
          Length = 1366

 Score = 41.2 bits (95), Expect = 0.006
 Identities = 75/278 (26%), Positives = 100/278 (35%), Gaps = 60/278 (21%)

Query: 387 PTPEDMEPSPSPPSSGSPPLGLESVPSEQSRVSEQSVVSEMQNRGLGSLFSGSLLPTDPK 446
           P P+ ++          PP G + +P       E   V +   RGL   F G   P  P+
Sbjct: 534 PGPQGVQGGKGEQGPPGPP-GFQGLPGPSGPAGE---VGKPGERGLHGEF-GLPGPAGPR 588

Query: 447 AAL--PGSSGAALPSSSAGLRLPRASLP----MGVRLLLLALRDCGPLCPTDSSSIGLKS 500
                PG SGAA P+   G R P          G   ++ A+   GP  P          
Sbjct: 589 GERGPPGESGAAGPTGPIGSRGPSGPPGPDGNKGEPGVVGAVGTAGPSGP---------- 638

Query: 501 LRVSWEVSSMPWEPWRLNWASPVTSSCSLIPRANGERG-----GDCAEPRLTGSLYLFRR 555
                  S +P E              + IP   GE+G     G+   P   G+     R
Sbjct: 639 -------SGLPGE-----------RGAAGIPGGKGEKGEPGLRGEIGNPGRDGA-----R 675

Query: 556 TLTPWHRALGKAEAWFSGWAAASWLQAGYRGPGLPGAAPGQAVEL-----IGLLRAAGGA 610
                  A G A A      A +   AG  GP  P  +PG+  E+      G    AG A
Sbjct: 676 GAPGAVGAPGPAGATGDRGEAGA---AGPAGPAGPRGSPGERGEVGPAGPNGFAGPAGAA 732

Query: 611 LQEGQQLPV-SRGTQGEAGAAGVRGPVGGAG--GADGP 645
            Q G +    ++G +GE G  G  GPVG AG  G +GP
Sbjct: 733 GQPGAKGERGAKGPKGENGVVGPTGPVGAAGPAGPNGP 770



 Score = 37.0 bits (84), Expect = 0.11
 Identities = 35/104 (33%), Positives = 43/104 (41%), Gaps = 16/104 (15%)

Query: 583 GYRGPGLPGAAPGQAVE--LIGLLRAAGGALQEGQQLPVSRGTQGEAGAAGVRGPVG--G 638
           G  GP  P    G+  E  L G     G A   G+     RG  GE+GAAG  GP+G  G
Sbjct: 556 GLPGPSGPAGEVGKPGERGLHGEFGLPGPAGPRGE-----RGPPGESGAAGPTGPIGSRG 610

Query: 639 AGGADGPGVQEREQALCTLLGQQLHIILTAAPAKCPQLPSCPGA 682
             G  GP   + E  +   +G       TA P+    LP   GA
Sbjct: 611 PSGPPGPDGNKGEPGVVGAVG-------TAGPSGPSGLPGERGA 647



 Score = 34.3 bits (77), Expect = 0.72
 Identities = 29/70 (41%), Positives = 35/70 (50%), Gaps = 12/70 (17%)

Query: 581 QAGYRGP-GLPG--AAPGQAVELIGLLRAAGGALQEGQQLPVSRGTQGEAGAAGVRGPVG 637
           +AG  GP G PG   +PG      GL  A G A   G       G++G +G AGVRGP G
Sbjct: 386 EAGSAGPPGPPGLRGSPGSR----GLPGADGRAGVMGPP-----GSRGASGPAGVRGPNG 436

Query: 638 GAGGADGPGV 647
            AG    PG+
Sbjct: 437 DAGRPGEPGL 446



 Score = 33.1 bits (74), Expect = 1.6
 Identities = 29/83 (34%), Positives = 38/83 (45%), Gaps = 14/83 (16%)

Query: 572 SGWAAASWLQAGYRGPGLPG--AAPGQ-----AVELIGLLRAAGGALQEGQQLPVSRGTQ 624
           +G   A+ L      PGLPG    PG      A    GL+   G A  +G+      G +
Sbjct: 306 TGAKGAAGLPGVAGAPGLPGPRGIPGPVGAAGATGARGLVGEPGPAGSKGES-----GNK 360

Query: 625 GEAGAAGVRGPVGGAG--GADGP 645
           GE G+AG +GP G +G  G  GP
Sbjct: 361 GEPGSAGPQGPPGPSGEEGKRGP 383



 Score = 32.7 bits (73), Expect = 2.1
 Identities = 30/75 (40%), Positives = 35/75 (46%), Gaps = 15/75 (20%)

Query: 582 AGYRGPGLPGAAPGQAVELIGLLR------AAGGALQEGQQLPVSR-GTQGEAGAAGVRG 634
           A Y G G+ G  PG     +GL+       AAG    +G Q P    G  G+ G AG RG
Sbjct: 79  AQYDGKGV-GLGPGP----MGLMGPRGPPGAAGAPGPQGFQGPAGEPGEPGQTGPAGARG 133

Query: 635 PVG--GAGGADG-PG 646
           P G  G  G DG PG
Sbjct: 134 PAGPPGKAGEDGHPG 148



 Score = 32.7 bits (73), Expect = 2.1
 Identities = 27/72 (37%), Positives = 32/72 (44%), Gaps = 13/72 (18%)

Query: 583 GYRG-PGLPG--AAPGQAVELIGLLRAAGGALQEGQQLPV-SRGTQGEAGAAGVRGPVGG 638
           G +G PG PG    PGQ     G     G   + G   P  +RG+ G  G  G  GP+G 
Sbjct: 196 GVKGEPGAPGENGTPGQT----GARGLPGERGRVGAPGPAGARGSDGSVGPVGPAGPIGS 251

Query: 639 AG-----GADGP 645
           AG     GA GP
Sbjct: 252 AGPPGFPGAPGP 263



 Score = 32.3 bits (72), Expect = 2.7
 Identities = 26/71 (36%), Positives = 31/71 (43%), Gaps = 8/71 (11%)

Query: 582 AGYRGPGLPGAAPGQAVELIGLLRAAGGALQEG----QQLPVSRGTQGEAGAAGVRGPVG 637
           AG +GP  P    G+     G    AG A   G    +  P SRG  G  G AGV GP G
Sbjct: 366 AGPQGPPGPSGEEGKR----GPNGEAGSAGPPGPPGLRGSPGSRGLPGADGRAGVMGPPG 421

Query: 638 GAGGADGPGVQ 648
             G +   GV+
Sbjct: 422 SRGASGPAGVR 432



 Score = 31.6 bits (70), Expect = 4.7
 Identities = 26/60 (43%), Positives = 30/60 (50%), Gaps = 12/60 (20%)

Query: 587 PGLPGAAPGQAVELIGLLRAAGGALQEGQQLPVSRGTQGEAGAAGVRGPVGGAG--GADG 644
           PG PGA PG   E IG +  AG A           G +GE G  G+ GPVG  G  GA+G
Sbjct: 255 PGFPGA-PGPKGE-IGAVGNAGPA--------GPAGPRGEVGLPGLSGPVGPPGNPGANG 304



 Score = 31.6 bits (70), Expect = 4.7
 Identities = 23/66 (34%), Positives = 28/66 (42%), Gaps = 4/66 (6%)

Query: 583 GYRGPGLPGAAPGQAVE--LIGLLRAAGGALQEGQQLPVSRGTQGEAGAAGVRGPVGGAG 640
           G RGP  P    G   E  ++G +  AG +   G  LP  RG  G  G  G +G  G  G
Sbjct: 607 GSRGPSGPPGPDGNKGEPGVVGAVGTAGPSGPSG--LPGERGAAGIPGGKGEKGEPGLRG 664

Query: 641 GADGPG 646
               PG
Sbjct: 665 EIGNPG 670



 Score = 31.6 bits (70), Expect = 4.7
 Identities = 34/102 (33%), Positives = 40/102 (39%), Gaps = 13/102 (12%)

Query: 581  QAGYRGP-GLPGAAPGQAVELIGLLRAAGGALQEGQQLPVSRGTQGEAGAAGVRGPVGGA 639
            + G +GP GLPG      ++  GL   AG    +G   P S G  G  G AG  GP G  
Sbjct: 1010 EPGEKGPRGLPGLKGHNGLQ--GLPGIAGHHGDQGA--PGSVGPAGPRGPAGPSGPAGKD 1065

Query: 640  GGADGPGVQEREQALCTLLGQQLHIILTAAPAKCPQLPSCPG 681
            G    PG          + G Q H      PA  P  P  PG
Sbjct: 1066 GRTGHPGT----VGPAGIRGPQGH----QGPAGPPGPPGPPG 1099



 Score = 31.2 bits (69), Expect = 6.1
 Identities = 25/69 (36%), Positives = 31/69 (44%), Gaps = 12/69 (17%)

Query: 581  QAGYRGP-GLPGAAPGQAVELIGLLRAAGGALQEGQQLPVSR-GTQGEAGAAGVRGPVGG 638
            Q G++G  G PG         IG + AAG     G   P  + G +GE G +G  GP G 
Sbjct: 941  QPGHKGERGYPGN--------IGPVGAAGAPGPHGPVGPAGKHGNRGETGPSGPVGPAGA 992

Query: 639  AG--GADGP 645
             G  G  GP
Sbjct: 993  VGPRGPSGP 1001



 Score = 30.8 bits (68), Expect = 8.0
 Identities = 23/66 (34%), Positives = 27/66 (40%), Gaps = 5/66 (7%)

Query: 582 AGYRGPGLPGAAPGQAVELIGLLRAAGGALQEGQQLPVSR-GTQGEAGAAGVRGPVGGAG 640
           AG RGP      PG+     GL+   G     G   P  + G  G  G  G  GP+G AG
Sbjct: 429 AGVRGPNGDAGRPGEP----GLMGPRGLPGSPGNIGPAGKEGPVGLPGIDGRPGPIGPAG 484

Query: 641 GADGPG 646
               PG
Sbjct: 485 ARGEPG 490



 Score = 30.8 bits (68), Expect = 8.0
 Identities = 30/85 (35%), Positives = 36/85 (42%), Gaps = 23/85 (27%)

Query: 581 QAGYRGP-GLPG-----AAPGQAVELIGL--------LRAAGGALQEGQQL-----PVSR 621
           +AG  GP G PG      APG    ++GL        L    GA+ E   L     P +R
Sbjct: 851 EAGTAGPPGTPGPQGLLGAPG----ILGLPGSRGERGLPGVAGAVGEPGPLGIAGPPGAR 906

Query: 622 GTQGEAGAAGVRGPVGGAGGADGPG 646
           G  G  G+ GV G  G AG    PG
Sbjct: 907 GPPGAVGSPGVNGAPGEAGRDGNPG 931


>gi|61966741 TMF regulated nuclear protein [Homo sapiens]
          Length = 227

 Score = 40.4 bits (93), Expect = 0.010
 Identities = 24/64 (37%), Positives = 34/64 (53%), Gaps = 3/64 (4%)

Query: 590 PGAAPGQAVELIGLLRAAGGALQEGQQLPVSRGTQGEAGAAGVRGPVGGAGGADGPGVQE 649
           P   PGQ+  L     A+ GA ++ +   + R  QG +G AG+ GP GG+G A G G + 
Sbjct: 44  PTPTPGQSPPLPDAAGASAGAAEDQE---LQRWRQGASGIAGLAGPGGGSGAAAGAGGRA 100

Query: 650 REQA 653
            E A
Sbjct: 101 LELA 104


>gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens]
          Length = 1626

 Score = 40.4 bits (93), Expect = 0.010
 Identities = 25/68 (36%), Positives = 29/68 (42%), Gaps = 8/68 (11%)

Query: 581 QAGYRGPGLPGAAPGQAVELIGLLRAAGGALQEGQQLPVSRGTQGEAGAAGVRGPVGGAG 640
           + G  GP  P   PG  V+  GL    G         P  RG QG  G  G RGP+G  G
Sbjct: 633 EKGDVGPAGPPGVPGSVVQQEGLKGEQGA--------PGPRGHQGAPGPPGARGPIGPEG 684

Query: 641 GADGPGVQ 648
               PG+Q
Sbjct: 685 RDGPPGLQ 692



 Score = 34.3 bits (77), Expect = 0.72
 Identities = 39/133 (29%), Positives = 55/133 (41%), Gaps = 14/133 (10%)

Query: 554 RRTLTPWHRALGKAEAWFSGWAAASWLQAGYRGP-GLPGAAPGQAVELIGLLRAAGGALQ 612
           +R  TP    +G  +       A    + G  GP GLPG  P   +  IG + A G   +
Sbjct: 458 QRPPTPGSEQIGFLKTINCSCPAGEKGEMGVAGPMGLPG--PKGDIGAIGPVGAPGPKGE 515

Query: 613 EGQQL--PVSRGTQGEAGAAGVRGPVG--GAGGADGPGVQEREQALCTLLGQQLHIILTA 668
           +G     P  +G +GE G+ G+ GP G  G+ G  G   +  E  L   +G +       
Sbjct: 516 KGDVGIGPFGQGEKGEKGSLGLPGPPGRDGSKGMRGEPGELGEPGLPGEVGMR------- 568

Query: 669 APAKCPQLPSCPG 681
            P   P LP  PG
Sbjct: 569 GPQGPPGLPGPPG 581



 Score = 33.5 bits (75), Expect = 1.2
 Identities = 40/130 (30%), Positives = 49/130 (37%), Gaps = 27/130 (20%)

Query: 530 IPRANGERG-----GDCAEPRLTGSLYLFRRTLTPWHRALGKAEAWFSGWAAASWLQAGY 584
           +P   G+RG     G    P L G+  LF    TP  R  G+                G 
Sbjct: 829 LPGLKGDRGEKGEAGPAGPPGLPGTTSLF----TPHPRMPGEQGP------------KGE 872

Query: 585 RG-PGLPG--AAPGQAVEL--IGLLRAAGGALQEGQQ-LPVSRGTQGEAGAAGVRGPVGG 638
           +G PGLPG     G+  EL   G     G   QEG    P + G  G  G  G  GP G 
Sbjct: 873 KGDPGLPGEPGLQGRPGELGPQGPTGPPGAKGQEGAHGAPGAAGNPGAPGHVGAPGPSGP 932

Query: 639 AGGADGPGVQ 648
            G    PG++
Sbjct: 933 PGSVGAPGLR 942



 Score = 33.5 bits (75), Expect = 1.2
 Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 6/65 (9%)

Query: 583  GYRGPGLPGAAPGQAVELIGLLRAAGGALQEGQQLPVSRGTQGEAGAAGVRGPVGGAGGA 642
            G+ GP  P   PG+     G+    G   + G+  P  +G +G+ G  G +GP GG G  
Sbjct: 1360 GFLGPRGPPGEPGEK----GVPGKEGVPGKPGE--PGFKGERGDPGIKGDKGPPGGKGQP 1413

Query: 643  DGPGV 647
              PG+
Sbjct: 1414 GDPGI 1418



 Score = 32.7 bits (73), Expect = 2.1
 Identities = 38/126 (30%), Positives = 51/126 (40%), Gaps = 18/126 (14%)

Query: 531 PRANGERG--GDCAEPRLTGSLYLFRRT-------LTPWHRALGKAEAWFSGWAAASWLQ 581
           PR  GE+G  G+  +P L G   L  R         T    A G+  A  +  AA +   
Sbjct: 861 PRMPGEQGPKGEKGDPGLPGEPGLQGRPGELGPQGPTGPPGAKGQEGAHGAPGAAGNPGA 920

Query: 582 AGYRGPGLPGAAPGQAVELIGLLRAAGGALQEGQQLPVSRGTQGEAGAAGVRGPVGGAGG 641
            G+ G   P   PG     +G     G   ++G+     RG +G AG  G  GPVG  G 
Sbjct: 921 PGHVGAPGPSGPPGS----VGAPGLRGTPGKDGE-----RGEKGAAGEEGSPGPVGPRGD 971

Query: 642 ADGPGV 647
              PG+
Sbjct: 972 PGAPGL 977



 Score = 32.0 bits (71), Expect = 3.6
 Identities = 31/107 (28%), Positives = 47/107 (43%), Gaps = 10/107 (9%)

Query: 583  GYRG-PGLPGAAPGQAVELIGLLRAAGGALQEGQQLPVSRGTQGEAGAAGVRGPVGGAGG 641
            G RG PG+PG+   +    IG+    G +   G +   S G++G  G  G +GP G  G 
Sbjct: 1025 GDRGAPGIPGSPGSRGDPGIGVAGPPGPSGPPGDK--GSPGSRGLPGFPGPQGPAGRDGA 1082

Query: 642  ADGPGVQ--EREQALCTLLGQ-QLHIILTAAPAKCPQ----LPSCPG 681
               PG +    +  L +LL    ++++       CP     LP  PG
Sbjct: 1083 PGNPGERGPPGKPGLSSLLSPGDINLLAKDVCNDCPPGPPGLPGLPG 1129


>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
          Length = 2944

 Score = 39.7 bits (91), Expect = 0.017
 Identities = 24/65 (36%), Positives = 30/65 (46%), Gaps = 9/65 (13%)

Query: 583  GYRGPGLPGAAPGQAVELIGLLRAAGGALQEGQQLPVSRGTQGEAGAAGVRGPVGGAGGA 642
            G RGP  P   PG   ++IG          EG  LP  +G  G +G  G RGP+G  G  
Sbjct: 1338 GERGPRGPKGEPGAPGQVIG---------GEGPGLPGRKGDPGPSGPPGPRGPLGDPGPR 1388

Query: 643  DGPGV 647
              PG+
Sbjct: 1389 GPPGL 1393



 Score = 38.5 bits (88), Expect = 0.038
 Identities = 35/103 (33%), Positives = 42/103 (40%), Gaps = 22/103 (21%)

Query: 583  GYRGPGLPGAAPGQAVELIGLLRAAGGALQEGQQLPVS----RGTQGEAGAAGVRGPVGG 638
            G+RGP  P   PG            G A ++G + P       G  G+ GAAG  GP G 
Sbjct: 1749 GFRGPPGPQGDPG----------VRGPAGEKGDRGPPGLDGRSGLDGKPGAAGPSGPNGA 1798

Query: 639  AGGADGPGVQEREQALCTLLGQQLHIILTAAPAKCPQLPSCPG 681
            AG A  PG       L  L G+Q        P+  P LP  PG
Sbjct: 1799 AGKAGDPG----RDGLPGLRGEQ----GLPGPSGPPGLPGKPG 1833



 Score = 36.2 bits (82), Expect = 0.19
 Identities = 84/296 (28%), Positives = 100/296 (33%), Gaps = 36/296 (12%)

Query: 376  GLEETWLSPISPTPEDMEPSPSPPSSGSP-PLGLESVPSEQSRVSEQSVVSEMQNRGL-G 433
            GL  T   P  P P+     P P  SG   P GL+    E     +Q    +    G+ G
Sbjct: 2079 GLPGTPGPPGPPGPKVSVDEPGPGLSGEQGPPGLKGAKGEPGSNGDQGPKGDRGVPGIKG 2138

Query: 434  SLFSGSLLPTDPKAALPGSSGAALPSSSAGLRLPRASL-PMGVRLLLLALRDCGPLCPTD 492
                      D    LPG  G A P    GL+ PR    P+G         D GP  P  
Sbjct: 2139 DRGEPGPRGQDGNPGLPGERGMAGPEGKPGLQGPRGPPGPVGGH------GDPGP--PGA 2190

Query: 493  SSSIGLKSLRVSWEVSSMPWEPWRLNWASPVTSSCSLIPRANGERG--GDCAEPRLTGSL 550
                G    +    +   P E           +    +P   G  G  G    P L G +
Sbjct: 2191 PGLAGPAGPQGPSGLKGEPGETGPPGRGLTGPTGAVGLPGPPGPSGLVGPQGSPGLPGQV 2250

Query: 551  YLFRRTLTPWHR-ALGKAEAWFSGWAAASWLQAGYRGP-GLPG--AAPGQAVELIGLLRA 606
                +   P    A GK     S     S    G  GP G PG   APGQAV  +GL  A
Sbjct: 2251 GETGKPGAPGRDGASGKDGDRGSPGVPGSPGLPGPVGPKGEPGPTGAPGQAV--VGLPGA 2308

Query: 607  AGGALQEG---------------QQLPVSRGTQGEAGAAGVRGPVG--GAGGADGP 645
             G     G               + LP  RG +GEAG AG  G  G  G  GA GP
Sbjct: 2309 KGEKGAPGGLAGDLVGEPGAKGDRGLPGPRGEKGEAGRAGEPGDPGEDGQKGAPGP 2364



 Score = 35.0 bits (79), Expect = 0.42
 Identities = 27/75 (36%), Positives = 35/75 (46%), Gaps = 14/75 (18%)

Query: 582  AGYRG----PGLPG--AAPGQAVELIGLLRAAGGALQEGQQLPVS----RGTQGEAGAAG 631
            AG++G    PG+PG   APG+     GL+   G    +GQ  P      +G +G  G  G
Sbjct: 2655 AGHKGEMGEPGVPGQSGAPGKE----GLIGPKGDRGFDGQPGPKGDQGEKGERGTPGIGG 2710

Query: 632  VRGPVGGAGGADGPG 646
              GP G  G A  PG
Sbjct: 2711 FPGPSGNDGSAGPPG 2725



 Score = 33.5 bits (75), Expect = 1.2
 Identities = 17/34 (50%), Positives = 18/34 (52%)

Query: 617  LPVSRGTQGEAGAAGVRGPVGGAGGADGPGVQER 650
            LP   G +G  GA GVRGPVG  G    PG   R
Sbjct: 1650 LPGKAGERGLRGAPGVRGPVGEKGDQGDPGEDGR 1683



 Score = 33.1 bits (74), Expect = 1.6
 Identities = 26/70 (37%), Positives = 33/70 (47%), Gaps = 6/70 (8%)

Query: 580  LQAGYRGPGLPGAAPGQAVE--LIGLLRAAGGALQEGQQLPVSRGTQGEAGAAGVRGPVG 637
            L  G RGP  P    G+  +  + GL   AGG  + G+  P  RG +GE G  G +G  G
Sbjct: 2019 LALGERGPPGPSGLAGEPGKPGIPGLPGRAGGVGEAGR--PGERGERGEKGERGEQGRDG 2076

Query: 638  --GAGGADGP 645
              G  G  GP
Sbjct: 2077 PPGLPGTPGP 2086



 Score = 32.7 bits (73), Expect = 2.1
 Identities = 29/68 (42%), Positives = 31/68 (45%), Gaps = 6/68 (8%)

Query: 587  PGLPGAAPGQAVELIGLLRAAGGALQEGQQ-LPVSRGTQGEAGAAGVRGPVGGAGGADGP 645
            PGLPG  PG   E  G     G    +G +  P   G  GEAG  G RGP G AG    P
Sbjct: 1455 PGLPGQ-PGSPGEQ-GPRGPPGAIGPKGDRGFP---GPLGEAGEKGERGPPGPAGSRGLP 1509

Query: 646  GVQEREQA 653
            GV  R  A
Sbjct: 1510 GVAGRPGA 1517



 Score = 32.7 bits (73), Expect = 2.1
 Identities = 25/62 (40%), Positives = 31/62 (50%), Gaps = 8/62 (12%)

Query: 587  PGLPGAAPGQAVELIGLLRAAGGALQEGQQLPVS-RGTQGEAGAAGVRGPVG--GAGGAD 643
            PGLPGA PG    ++G     G   + GQ  P   RG  G  G  G+ GP+G  G  G+ 
Sbjct: 2394 PGLPGA-PG----VVGFPGQTGPRGEMGQPGPSGERGLAGPPGREGIPGPLGPPGPPGSV 2448

Query: 644  GP 645
            GP
Sbjct: 2449 GP 2450


>gi|11386161 alpha 2 type IX collagen [Homo sapiens]
          Length = 689

 Score = 38.5 bits (88), Expect = 0.038
 Identities = 27/71 (38%), Positives = 37/71 (52%), Gaps = 8/71 (11%)

Query: 583 GYRG-PGLPG----AAPGQAVELIGLLRAAGGALQEGQQLPVSR-GTQGEAGAAGVRGPV 636
           G RG PG+ G      P     ++G + A G   +EG + P  R G +G+ G+ G+RGP 
Sbjct: 232 GIRGYPGMAGPKGETGPHGYKGMVGAIGATGPPGEEGPRGPPGRAGEKGDEGSPGIRGPQ 291

Query: 637 G--GAGGADGP 645
           G  G  GA GP
Sbjct: 292 GITGPKGATGP 302



 Score = 32.0 bits (71), Expect = 3.6
 Identities = 24/67 (35%), Positives = 31/67 (46%), Gaps = 2/67 (2%)

Query: 583 GYRGPGLPGAAPGQAVELIGLLRAAGGALQEGQQLPVSR-GTQGEAGAAGVRGPVGGAGG 641
           G+ GP      PG   E IG     G    +G++ PV + G QG  G  G +GP G  G 
Sbjct: 361 GFSGPPGKEGEPGPRGE-IGPQGIMGQKGDQGERGPVGQPGPQGRQGPKGEQGPPGIPGP 419

Query: 642 ADGPGVQ 648
              PGV+
Sbjct: 420 QGLPGVK 426



 Score = 30.8 bits (68), Expect = 8.0
 Identities = 20/41 (48%), Positives = 20/41 (48%), Gaps = 2/41 (4%)

Query: 608 GGALQEGQQLPVSRGTQGEAGAAGVRGPVGGAGGADGPGVQ 648
           G A Q GQ  P S G QG AG  G  G  GG G    PG Q
Sbjct: 319 GSAGQAGQ--PGSPGHQGLAGVPGQPGTKGGPGDQGEPGPQ 357


>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
            sapiens]
          Length = 1818

 Score = 38.1 bits (87), Expect = 0.050
 Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 8/69 (11%)

Query: 587  PGLPGAA--PGQAVE-----LIGLLRAAGGALQEGQQ-LPVSRGTQGEAGAAGVRGPVGG 638
            PGLPG    PG   E     LIGL+   G   ++G + LP ++G+ G  G  G+ GP G 
Sbjct: 1449 PGLPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGSPGAKGDGGIPGPAGP 1508

Query: 639  AGGADGPGV 647
             G    PG+
Sbjct: 1509 LGPPGPPGL 1517



 Score = 35.0 bits (79), Expect = 0.42
 Identities = 30/72 (41%), Positives = 34/72 (47%), Gaps = 20/72 (27%)

Query: 582  AGYRG----PGLPGA--APGQAVELIGLLRAAGGALQEGQQLPVSRGTQGEAGAAGVRGP 635
            AG RG     GLPGA  APG            GG   +G   PV  G+ GE G+AG  GP
Sbjct: 1035 AGLRGFPGERGLPGAQGAPG----------LKGGEGPQGPPGPV--GSPGERGSAGTAGP 1082

Query: 636  VG--GAGGADGP 645
            +G  G  G  GP
Sbjct: 1083 IGLPGRPGPQGP 1094



 Score = 34.7 bits (78), Expect = 0.55
 Identities = 29/69 (42%), Positives = 33/69 (47%), Gaps = 14/69 (20%)

Query: 582  AGYRGP-GLPGAAPGQAVELIGLLRAAGGALQEGQQLPVSRGTQGEAGAAGVRGPV---G 637
            AG  GP GLPG    Q           G A ++G   P  +G QG AG  GV+GPV   G
Sbjct: 1077 AGTAGPIGLPGRPGPQG--------PPGPAGEKGA--PGEKGPQGPAGRDGVQGPVGLPG 1126

Query: 638  GAGGADGPG 646
             AG A  PG
Sbjct: 1127 PAGPAGSPG 1135



 Score = 33.5 bits (75), Expect = 1.2
 Identities = 23/61 (37%), Positives = 28/61 (45%), Gaps = 6/61 (9%)

Query: 587 PGLPGAAPGQAVELIGLLRAAGGALQEGQQLPVS-RGTQGEAGAAGVRGPVGGAGGADGP 645
           PG PGA   +     G    AG     GQ+ P   RG++G  G  G  GP G +GG   P
Sbjct: 870 PGFPGANGEK-----GARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTSGGDGPP 924

Query: 646 G 646
           G
Sbjct: 925 G 925



 Score = 32.3 bits (72), Expect = 2.7
 Identities = 27/69 (39%), Positives = 30/69 (43%), Gaps = 9/69 (13%)

Query: 581  QAGYRGPGLPGAAPGQAVELIGLLRAAGGALQEGQQLPVSRGTQGEAGAAGV---RGPVG 637
            Q G  GP      PG      G     G A  EG+Q    +G +GEAGA G     GPVG
Sbjct: 1355 QPGPPGPSGEAGPPGPP----GKRGPPGAAGAEGRQ--GEKGAKGEAGAEGPPGKTGPVG 1408

Query: 638  GAGGADGPG 646
              G A  PG
Sbjct: 1409 PQGPAGKPG 1417



 Score = 32.0 bits (71), Expect = 3.6
 Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 6/64 (9%)

Query: 583  GYRGPGLPGAAPGQAVELIGLLRAAGGALQEGQQLPVSRGTQGEAGAAGVRGPVGGAGGA 642
            G  GP  P  +PG+     G     G   Q+G +    +G  G  G  G++GPVG  G A
Sbjct: 1123 GLPGPAGPAGSPGED----GDKGEIGEPGQKGSK--GDKGENGPPGPPGLQGPVGAPGIA 1176

Query: 643  DGPG 646
             G G
Sbjct: 1177 GGDG 1180



 Score = 31.6 bits (70), Expect = 4.7
 Identities = 28/72 (38%), Positives = 33/72 (45%), Gaps = 10/72 (13%)

Query: 583  GYRGPGLPGAAPGQAVELIGLLRAAGGALQEGQQLPVS-RGTQGEAGAAGVR---GPVG- 637
            G RGP     A G+  E  G    AG     G+  PV  +G  G+ G  G+R   GPVG 
Sbjct: 1372 GKRGPPGAAGAEGRQGEK-GAKGEAGAEGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVGE 1430

Query: 638  ----GAGGADGP 645
                GA G DGP
Sbjct: 1431 QGLPGAAGQDGP 1442



 Score = 31.2 bits (69), Expect = 6.1
 Identities = 23/65 (35%), Positives = 28/65 (43%), Gaps = 12/65 (18%)

Query: 583 GYRGPGLPGAAPGQAVELIGLLRAAGGALQEGQQLPVSRGTQGEAGAAGVRGPVGGAGGA 642
           G RGP  P   PG            G   ++G+  P  RG  GEAG  G+ GP G  G  
Sbjct: 628 GERGPQGPPGPPGDD----------GMRGEDGEIGP--RGLPGEAGPRGLLGPRGTPGAP 675

Query: 643 DGPGV 647
             PG+
Sbjct: 676 GQPGM 680



 Score = 31.2 bits (69), Expect = 6.1
 Identities = 23/65 (35%), Positives = 29/65 (44%), Gaps = 2/65 (3%)

Query: 583  GYRGPGLPGAAPGQAVELIGLLRAAGGALQEGQQLPVSR-GTQGEAGAAGVRGPVGGAGG 641
            G RGP  P  A G      G + + GG  ++G+       G  GEAG  G +G  G  G 
Sbjct: 1237 GPRGPQGPNGADGPQGPP-GSVGSVGGVGEKGEPGEAGNPGPPGEAGVGGPKGERGEKGE 1295

Query: 642  ADGPG 646
            A  PG
Sbjct: 1296 AGPPG 1300



 Score = 30.8 bits (68), Expect = 8.0
 Identities = 26/77 (33%), Positives = 32/77 (41%), Gaps = 17/77 (22%)

Query: 587 PGLPGA--APGQAVELIGLLRAAGGALQEG--------------QQLPVS-RGTQGEAGA 629
           PGLPGA   PG    ++ L    GG   +G              QQ  ++ RG  G  G 
Sbjct: 489 PGLPGADGLPGPPGTMLMLPFRYGGDGSKGPTISAQEAQAQAILQQARIALRGPPGPMGL 548

Query: 630 AGVRGPVGGAGGADGPG 646
            G  GPVGG G +   G
Sbjct: 549 TGRPGPVGGPGSSGAKG 565


>gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Homo
            sapiens]
          Length = 1767

 Score = 38.1 bits (87), Expect = 0.050
 Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 8/69 (11%)

Query: 587  PGLPGAA--PGQAVE-----LIGLLRAAGGALQEGQQ-LPVSRGTQGEAGAAGVRGPVGG 638
            PGLPG    PG   E     LIGL+   G   ++G + LP ++G+ G  G  G+ GP G 
Sbjct: 1398 PGLPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGSPGAKGDGGIPGPAGP 1457

Query: 639  AGGADGPGV 647
             G    PG+
Sbjct: 1458 LGPPGPPGL 1466



 Score = 35.0 bits (79), Expect = 0.42
 Identities = 30/72 (41%), Positives = 34/72 (47%), Gaps = 20/72 (27%)

Query: 582  AGYRG----PGLPGA--APGQAVELIGLLRAAGGALQEGQQLPVSRGTQGEAGAAGVRGP 635
            AG RG     GLPGA  APG            GG   +G   PV  G+ GE G+AG  GP
Sbjct: 984  AGLRGFPGERGLPGAQGAPG----------LKGGEGPQGPPGPV--GSPGERGSAGTAGP 1031

Query: 636  VG--GAGGADGP 645
            +G  G  G  GP
Sbjct: 1032 IGLPGRPGPQGP 1043



 Score = 34.7 bits (78), Expect = 0.55
 Identities = 29/69 (42%), Positives = 33/69 (47%), Gaps = 14/69 (20%)

Query: 582  AGYRGP-GLPGAAPGQAVELIGLLRAAGGALQEGQQLPVSRGTQGEAGAAGVRGPV---G 637
            AG  GP GLPG    Q           G A ++G   P  +G QG AG  GV+GPV   G
Sbjct: 1026 AGTAGPIGLPGRPGPQG--------PPGPAGEKGA--PGEKGPQGPAGRDGVQGPVGLPG 1075

Query: 638  GAGGADGPG 646
             AG A  PG
Sbjct: 1076 PAGPAGSPG 1084



 Score = 33.5 bits (75), Expect = 1.2
 Identities = 23/61 (37%), Positives = 28/61 (45%), Gaps = 6/61 (9%)

Query: 587 PGLPGAAPGQAVELIGLLRAAGGALQEGQQLPVS-RGTQGEAGAAGVRGPVGGAGGADGP 645
           PG PGA   +     G    AG     GQ+ P   RG++G  G  G  GP G +GG   P
Sbjct: 819 PGFPGANGEK-----GARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTSGGDGPP 873

Query: 646 G 646
           G
Sbjct: 874 G 874



 Score = 32.3 bits (72), Expect = 2.7
 Identities = 27/69 (39%), Positives = 30/69 (43%), Gaps = 9/69 (13%)

Query: 581  QAGYRGPGLPGAAPGQAVELIGLLRAAGGALQEGQQLPVSRGTQGEAGAAGV---RGPVG 637
            Q G  GP      PG      G     G A  EG+Q    +G +GEAGA G     GPVG
Sbjct: 1304 QPGPPGPSGEAGPPGPP----GKRGPPGAAGAEGRQ--GEKGAKGEAGAEGPPGKTGPVG 1357

Query: 638  GAGGADGPG 646
              G A  PG
Sbjct: 1358 PQGPAGKPG 1366



 Score = 32.0 bits (71), Expect = 3.6
 Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 6/64 (9%)

Query: 583  GYRGPGLPGAAPGQAVELIGLLRAAGGALQEGQQLPVSRGTQGEAGAAGVRGPVGGAGGA 642
            G  GP  P  +PG+     G     G   Q+G +    +G  G  G  G++GPVG  G A
Sbjct: 1072 GLPGPAGPAGSPGED----GDKGEIGEPGQKGSK--GDKGENGPPGPPGLQGPVGAPGIA 1125

Query: 643  DGPG 646
             G G
Sbjct: 1126 GGDG 1129



 Score = 31.6 bits (70), Expect = 4.7
 Identities = 28/72 (38%), Positives = 33/72 (45%), Gaps = 10/72 (13%)

Query: 583  GYRGPGLPGAAPGQAVELIGLLRAAGGALQEGQQLPVS-RGTQGEAGAAGVR---GPVG- 637
            G RGP     A G+  E  G    AG     G+  PV  +G  G+ G  G+R   GPVG 
Sbjct: 1321 GKRGPPGAAGAEGRQGEK-GAKGEAGAEGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVGE 1379

Query: 638  ----GAGGADGP 645
                GA G DGP
Sbjct: 1380 QGLPGAAGQDGP 1391



 Score = 31.2 bits (69), Expect = 6.1
 Identities = 23/65 (35%), Positives = 28/65 (43%), Gaps = 12/65 (18%)

Query: 583 GYRGPGLPGAAPGQAVELIGLLRAAGGALQEGQQLPVSRGTQGEAGAAGVRGPVGGAGGA 642
           G RGP  P   PG            G   ++G+  P  RG  GEAG  G+ GP G  G  
Sbjct: 577 GERGPQGPPGPPGDD----------GMRGEDGEIGP--RGLPGEAGPRGLLGPRGTPGAP 624

Query: 643 DGPGV 647
             PG+
Sbjct: 625 GQPGM 629



 Score = 31.2 bits (69), Expect = 6.1
 Identities = 23/65 (35%), Positives = 29/65 (44%), Gaps = 2/65 (3%)

Query: 583  GYRGPGLPGAAPGQAVELIGLLRAAGGALQEGQQLPVSR-GTQGEAGAAGVRGPVGGAGG 641
            G RGP  P  A G      G + + GG  ++G+       G  GEAG  G +G  G  G 
Sbjct: 1186 GPRGPQGPNGADGPQGPP-GSVGSVGGVGEKGEPGEAGNPGPPGEAGVGGPKGERGEKGE 1244

Query: 642  ADGPG 646
            A  PG
Sbjct: 1245 AGPPG 1249



 Score = 30.8 bits (68), Expect = 8.0
 Identities = 26/77 (33%), Positives = 32/77 (41%), Gaps = 17/77 (22%)

Query: 587 PGLPGA--APGQAVELIGLLRAAGGALQEG--------------QQLPVS-RGTQGEAGA 629
           PGLPGA   PG    ++ L    GG   +G              QQ  ++ RG  G  G 
Sbjct: 438 PGLPGADGLPGPPGTMLMLPFRYGGDGSKGPTISAQEAQAQAILQQARIALRGPPGPMGL 497

Query: 630 AGVRGPVGGAGGADGPG 646
            G  GPVGG G +   G
Sbjct: 498 TGRPGPVGGPGSSGAKG 514


>gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Homo
            sapiens]
          Length = 1806

 Score = 38.1 bits (87), Expect = 0.050
 Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 8/69 (11%)

Query: 587  PGLPGAA--PGQAVE-----LIGLLRAAGGALQEGQQ-LPVSRGTQGEAGAAGVRGPVGG 638
            PGLPG    PG   E     LIGL+   G   ++G + LP ++G+ G  G  G+ GP G 
Sbjct: 1437 PGLPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGSPGAKGDGGIPGPAGP 1496

Query: 639  AGGADGPGV 647
             G    PG+
Sbjct: 1497 LGPPGPPGL 1505



 Score = 35.0 bits (79), Expect = 0.42
 Identities = 30/72 (41%), Positives = 34/72 (47%), Gaps = 20/72 (27%)

Query: 582  AGYRG----PGLPGA--APGQAVELIGLLRAAGGALQEGQQLPVSRGTQGEAGAAGVRGP 635
            AG RG     GLPGA  APG            GG   +G   PV  G+ GE G+AG  GP
Sbjct: 1023 AGLRGFPGERGLPGAQGAPG----------LKGGEGPQGPPGPV--GSPGERGSAGTAGP 1070

Query: 636  VG--GAGGADGP 645
            +G  G  G  GP
Sbjct: 1071 IGLPGRPGPQGP 1082



 Score = 34.7 bits (78), Expect = 0.55
 Identities = 29/69 (42%), Positives = 33/69 (47%), Gaps = 14/69 (20%)

Query: 582  AGYRGP-GLPGAAPGQAVELIGLLRAAGGALQEGQQLPVSRGTQGEAGAAGVRGPV---G 637
            AG  GP GLPG    Q           G A ++G   P  +G QG AG  GV+GPV   G
Sbjct: 1065 AGTAGPIGLPGRPGPQG--------PPGPAGEKGA--PGEKGPQGPAGRDGVQGPVGLPG 1114

Query: 638  GAGGADGPG 646
             AG A  PG
Sbjct: 1115 PAGPAGSPG 1123



 Score = 33.5 bits (75), Expect = 1.2
 Identities = 23/61 (37%), Positives = 28/61 (45%), Gaps = 6/61 (9%)

Query: 587 PGLPGAAPGQAVELIGLLRAAGGALQEGQQLPVS-RGTQGEAGAAGVRGPVGGAGGADGP 645
           PG PGA   +     G    AG     GQ+ P   RG++G  G  G  GP G +GG   P
Sbjct: 858 PGFPGANGEK-----GARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTSGGDGPP 912

Query: 646 G 646
           G
Sbjct: 913 G 913



 Score = 32.3 bits (72), Expect = 2.7
 Identities = 27/69 (39%), Positives = 30/69 (43%), Gaps = 9/69 (13%)

Query: 581  QAGYRGPGLPGAAPGQAVELIGLLRAAGGALQEGQQLPVSRGTQGEAGAAGV---RGPVG 637
            Q G  GP      PG      G     G A  EG+Q    +G +GEAGA G     GPVG
Sbjct: 1343 QPGPPGPSGEAGPPGPP----GKRGPPGAAGAEGRQ--GEKGAKGEAGAEGPPGKTGPVG 1396

Query: 638  GAGGADGPG 646
              G A  PG
Sbjct: 1397 PQGPAGKPG 1405



 Score = 32.0 bits (71), Expect = 3.6
 Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 6/64 (9%)

Query: 583  GYRGPGLPGAAPGQAVELIGLLRAAGGALQEGQQLPVSRGTQGEAGAAGVRGPVGGAGGA 642
            G  GP  P  +PG+     G     G   Q+G +    +G  G  G  G++GPVG  G A
Sbjct: 1111 GLPGPAGPAGSPGED----GDKGEIGEPGQKGSK--GDKGENGPPGPPGLQGPVGAPGIA 1164

Query: 643  DGPG 646
             G G
Sbjct: 1165 GGDG 1168



 Score = 31.6 bits (70), Expect = 4.7
 Identities = 28/72 (38%), Positives = 33/72 (45%), Gaps = 10/72 (13%)

Query: 583  GYRGPGLPGAAPGQAVELIGLLRAAGGALQEGQQLPVS-RGTQGEAGAAGVR---GPVG- 637
            G RGP     A G+  E  G    AG     G+  PV  +G  G+ G  G+R   GPVG 
Sbjct: 1360 GKRGPPGAAGAEGRQGEK-GAKGEAGAEGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVGE 1418

Query: 638  ----GAGGADGP 645
                GA G DGP
Sbjct: 1419 QGLPGAAGQDGP 1430



 Score = 31.2 bits (69), Expect = 6.1
 Identities = 23/65 (35%), Positives = 28/65 (43%), Gaps = 12/65 (18%)

Query: 583 GYRGPGLPGAAPGQAVELIGLLRAAGGALQEGQQLPVSRGTQGEAGAAGVRGPVGGAGGA 642
           G RGP  P   PG            G   ++G+  P  RG  GEAG  G+ GP G  G  
Sbjct: 616 GERGPQGPPGPPGDD----------GMRGEDGEIGP--RGLPGEAGPRGLLGPRGTPGAP 663

Query: 643 DGPGV 647
             PG+
Sbjct: 664 GQPGM 668



 Score = 31.2 bits (69), Expect = 6.1
 Identities = 23/65 (35%), Positives = 29/65 (44%), Gaps = 2/65 (3%)

Query: 583  GYRGPGLPGAAPGQAVELIGLLRAAGGALQEGQQLPVSR-GTQGEAGAAGVRGPVGGAGG 641
            G RGP  P  A G      G + + GG  ++G+       G  GEAG  G +G  G  G 
Sbjct: 1225 GPRGPQGPNGADGPQGPP-GSVGSVGGVGEKGEPGEAGNPGPPGEAGVGGPKGERGEKGE 1283

Query: 642  ADGPG 646
            A  PG
Sbjct: 1284 AGPPG 1288



 Score = 30.8 bits (68), Expect = 8.0
 Identities = 26/77 (33%), Positives = 32/77 (41%), Gaps = 17/77 (22%)

Query: 587 PGLPGA--APGQAVELIGLLRAAGGALQEG--------------QQLPVS-RGTQGEAGA 629
           PGLPGA   PG    ++ L    GG   +G              QQ  ++ RG  G  G 
Sbjct: 477 PGLPGADGLPGPPGTMLMLPFRYGGDGSKGPTISAQEAQAQAILQQARIALRGPPGPMGL 536

Query: 630 AGVRGPVGGAGGADGPG 646
            G  GPVGG G +   G
Sbjct: 537 TGRPGPVGGPGSSGAKG 553


>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
          Length = 1466

 Score = 38.1 bits (87), Expect = 0.050
 Identities = 29/69 (42%), Positives = 34/69 (49%), Gaps = 14/69 (20%)

Query: 581 QAGYRGP-GLPGAAPGQAVELIGLLRAAGGALQEGQQLPVSRGTQGEAGAAGVRGPVGGA 639
           + G  GP G PGA PGQ  E        GG  + G     + G +GE G  GV GP GG+
Sbjct: 802 ETGPPGPAGFPGA-PGQNGE-------PGGKGERG-----APGEKGEGGPPGVAGPPGGS 848

Query: 640 GGADGPGVQ 648
           G A  PG Q
Sbjct: 849 GPAGPPGPQ 857



 Score = 35.4 bits (80), Expect = 0.32
 Identities = 32/83 (38%), Positives = 36/83 (43%), Gaps = 6/83 (7%)

Query: 565 GKAEAWFSGWAAASWLQAGYRGPGLPGAAPGQAVELIGLLRAAGGALQEGQQ-LPVSRGT 623
           GK E   +G   A  L  G RGP  P  A G      GL   AG   + G +  P  RG 
Sbjct: 394 GKGEMGPAGIPGAPGLM-GARGPPGPAGANGAP----GLRGGAGEPGKNGAKGEPGPRGE 448

Query: 624 QGEAGAAGVRGPVGGAGGADGPG 646
           +GEAG  GV G  G  G    PG
Sbjct: 449 RGEAGIPGVPGAKGEDGKDGSPG 471



 Score = 34.7 bits (78), Expect = 0.55
 Identities = 27/73 (36%), Positives = 32/73 (43%), Gaps = 16/73 (21%)

Query: 583  GYRGPGLPGAAPGQAVELIGLLRAAGGALQEGQQLPVS-RGTQGEAGAAGVRGPVG---- 637
            G  GP  P  APG A          G     G Q P   +G  GE GAAG++G  G    
Sbjct: 1065 GESGPAGPAGAPGPA----------GSRGAPGPQGPRGDKGETGERGAAGIKGHRGFPGN 1114

Query: 638  -GAGGADGPGVQE 649
             GA G+ GP  Q+
Sbjct: 1115 PGAPGSPGPAGQQ 1127



 Score = 32.3 bits (72), Expect = 2.7
 Identities = 28/74 (37%), Positives = 31/74 (41%), Gaps = 13/74 (17%)

Query: 583 GYRG-PGLPGAAPGQAVELIGLLRAAGGALQEGQQ-------LPVSRGTQGEAGAAGVRG 634
           G RG PGLPGAA  +  +      A G   Q G          P S G +GE G AG  G
Sbjct: 306 GERGRPGLPGAAGARGND-----GARGSDGQPGPPGPPGTAGFPGSPGAKGEVGPAGSPG 360

Query: 635 PVGGAGGADGPGVQ 648
             G  G    PG Q
Sbjct: 361 SNGAPGQRGEPGPQ 374



 Score = 32.3 bits (72), Expect = 2.7
 Identities = 23/65 (35%), Positives = 26/65 (40%), Gaps = 11/65 (16%)

Query: 583 GYRGPGLPGAAPGQAVELIGLLRAAGGALQEGQQLPVS-RGTQGEAGAAGVRGPVGGAGG 641
           G+RGP  P   PG+           G A + G   P   RG  GE G  GV G  G  G 
Sbjct: 489 GFRGPAGPNGIPGEK----------GPAGERGAPGPAGPRGAAGEPGRDGVPGGPGMRGM 538

Query: 642 ADGPG 646
              PG
Sbjct: 539 PGSPG 543



 Score = 32.0 bits (71), Expect = 3.6
 Identities = 73/263 (27%), Positives = 90/263 (34%), Gaps = 28/263 (10%)

Query: 398 PPSSGSP-PLGLESVPSEQSRVSEQSVVSEMQNRGL-GSLFSGSLLPTDPK--AALPGSS 453
           P  +G+P P+G    P E+ R           N G  GS   G   P  P   A  PGS 
Sbjct: 290 PGENGAPGPMGPRGAPGERGRPGLPGAAGARGNDGARGS--DGQPGPPGPPGTAGFPGSP 347

Query: 454 GAALPSSSAGLRLPRASLPMGVRLLLLALRDCGPLCPTDSSSI-GLKSLRVSWEVSSMPW 512
           GA      AG   P ++   G R         G   P     I G    +     + +P 
Sbjct: 348 GAKGEVGPAGS--PGSNGAPGQRGEPGPQGHAGAQGPPGPPGINGSPGGKGEMGPAGIPG 405

Query: 513 EPWRLNWASPVTSSCSLIPRANGERG--GDCAEPRLTGSLYLFRRTLTPWHRALGKAEAW 570
            P  +    P   +      ANG  G  G   EP   G+         P  R   + EA 
Sbjct: 406 APGLMGARGPPGPA-----GANGAPGLRGGAGEPGKNGAKG------EPGPRG-ERGEAG 453

Query: 571 FSGWAAASWLQAGYRGPGLPGA--APGQAVE--LIGLLRAAGGALQEGQQLPVS-RGTQG 625
             G   A         PG PGA   PG A E    G    AG     G++ P   RG  G
Sbjct: 454 IPGVPGAKGEDGKDGSPGEPGANGLPGAAGERGAPGFRGPAGPNGIPGEKGPAGERGAPG 513

Query: 626 EAGAAGVRGPVGGAGGADGPGVQ 648
            AG  G  G  G  G   GPG++
Sbjct: 514 PAGPRGAAGEPGRDGVPGGPGMR 536



 Score = 32.0 bits (71), Expect = 3.6
 Identities = 28/66 (42%), Positives = 29/66 (43%), Gaps = 13/66 (19%)

Query: 587 PGLPGAAPGQAVELIGLLRAAGGALQEGQQLPVSRGTQGEAGAAGVR------GPVGGAG 640
           PG PG   G A    G   A GG    G   P  RG  G AGA G+R      GP GG G
Sbjct: 656 PGEPGPK-GDA----GAPGAPGGKGDAGA--PGERGPPGLAGAPGLRGGAGPPGPEGGKG 708

Query: 641 GADGPG 646
            A  PG
Sbjct: 709 AAGPPG 714



 Score = 31.6 bits (70), Expect = 4.7
 Identities = 26/70 (37%), Positives = 30/70 (42%), Gaps = 7/70 (10%)

Query: 582 AGYRGPGLPGAAPGQAVELIGLLRAAGGALQEGQQLPVSRGTQGEAGAAGVRGPVGGAGG 641
           AGY GP  P   PG      G     G     G Q P   G  G+AG +G  GP  GA G
Sbjct: 170 AGYPGPAGPPGPPGPP----GTSGHPGSPGSPGYQGPP--GEPGQAGPSGPPGP-PGAIG 222

Query: 642 ADGPGVQERE 651
             GP  ++ E
Sbjct: 223 PSGPAGKDGE 232



 Score = 31.6 bits (70), Expect = 4.7
 Identities = 26/61 (42%), Positives = 27/61 (44%), Gaps = 12/61 (19%)

Query: 587  PGLPGAAPGQAVELIGLLRAAGGALQEGQQLPVSRGTQGEAGAAGVRGPVG--GAGGADG 644
            PG PGA PG      G     G A + G      RG  G AG AG  GP G  GA G  G
Sbjct: 1040 PGAPGA-PGHP----GPPGPVGPAGKSGD-----RGESGPAGPAGAPGPAGSRGAPGPQG 1089

Query: 645  P 645
            P
Sbjct: 1090 P 1090



 Score = 31.2 bits (69), Expect = 6.1
 Identities = 28/89 (31%), Positives = 40/89 (44%), Gaps = 11/89 (12%)

Query: 583 GYRGP-GLPG-AAPGQAVELIGLLRAAGGALQEGQQ-LPVSRGTQGEAGAAGVRGPVG-- 637
           GY+GP G PG A P       G +  +G A ++G+   P   G +G  G  G++GP G  
Sbjct: 198 GYQGPPGEPGQAGPSGPPGPPGAIGPSGPAGKDGESGRPGRPGERGLPGPPGIKGPAGIP 257

Query: 638 ------GAGGADGPGVQEREQALCTLLGQ 660
                 G  G DG   ++ E     L G+
Sbjct: 258 GFPGMKGHRGFDGRNGEKGETGAPGLKGE 286


>gi|239757699 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 270

 Score = 37.4 bits (85), Expect = 0.085
 Identities = 71/234 (30%), Positives = 86/234 (36%), Gaps = 54/234 (23%)

Query: 347 GLSLGRPPLQLGSLSTETG---AGASPGGLDVGL---EETWLSP---ISPTPEDMEPSPS 397
           GLS G P L       E G   AG + G   VGL   E  W SP     P P+     P 
Sbjct: 34  GLSFGGPQLSTPGQDREAGADTAGGAAGERQVGLQKIEAEWWSPWPICLPHPQ----GPR 89

Query: 398 PPSSGSP--PLGL--------------ESVPSEQSRVSEQSVVSEMQNRG-LGSLFSGSL 440
           PPSS SP  P GL              +  P   S VS +   +  + RG  G    G  
Sbjct: 90  PPSS-SPRWPWGLGDRLLGARASRSGPQEPPPPGSTVSRRKAGNRPRLRGTAGGKAQGPG 148

Query: 441 LPTDPKAALPGSSGAALPSSSA---------GLRL-PRASLPMGVRLL--LLALRDCGPL 488
            P  P + LP      L S +          GLRL PR S   G R     LA       
Sbjct: 149 NPEGPSSLLPRLLPLLLLSGATRDRRRLWGEGLRLAPRRSRDEGRRASPGNLASPGLRLR 208

Query: 489 CPTDSSSIGLKSL--RVSWEVSSMPWEPWRLNWASPVTSSCSLIPRANGERGGD 540
           C  D   +GL+ L  R S  +SS P         S +    S++  AN E G +
Sbjct: 209 CRLDLPGLGLRDLGARSSSVLSSSP---------SELVPELSVLLLANSEEGSE 253


>gi|239752184 PREDICTED: hypothetical protein XP_002348161 [Homo
           sapiens]
          Length = 270

 Score = 37.4 bits (85), Expect = 0.085
 Identities = 71/234 (30%), Positives = 86/234 (36%), Gaps = 54/234 (23%)

Query: 347 GLSLGRPPLQLGSLSTETG---AGASPGGLDVGL---EETWLSP---ISPTPEDMEPSPS 397
           GLS G P L       E G   AG + G   VGL   E  W SP     P P+     P 
Sbjct: 34  GLSFGGPQLSTPGQDREAGADTAGGAAGERQVGLQKIEAEWWSPWPICLPHPQ----GPR 89

Query: 398 PPSSGSP--PLGL--------------ESVPSEQSRVSEQSVVSEMQNRG-LGSLFSGSL 440
           PPSS SP  P GL              +  P   S VS +   +  + RG  G    G  
Sbjct: 90  PPSS-SPRWPWGLGDRLLGARASRSGPQEPPPPGSTVSRRKAGNRPRLRGTAGGKAQGPG 148

Query: 441 LPTDPKAALPGSSGAALPSSSA---------GLRL-PRASLPMGVRLL--LLALRDCGPL 488
            P  P + LP      L S +          GLRL PR S   G R     LA       
Sbjct: 149 NPEGPSSLLPRLLPLLLLSGATRDRRRLWGEGLRLAPRRSRDEGRRASPGNLASPGLRLR 208

Query: 489 CPTDSSSIGLKSL--RVSWEVSSMPWEPWRLNWASPVTSSCSLIPRANGERGGD 540
           C  D   +GL+ L  R S  +SS P         S +    S++  AN E G +
Sbjct: 209 CRLDLPGLGLRDLGARSSSVLSSSP---------SELVPELSVLLLANSEEGSE 253


>gi|239746707 PREDICTED: hypothetical protein XP_002343834 [Homo
           sapiens]
          Length = 270

 Score = 37.4 bits (85), Expect = 0.085
 Identities = 71/234 (30%), Positives = 86/234 (36%), Gaps = 54/234 (23%)

Query: 347 GLSLGRPPLQLGSLSTETG---AGASPGGLDVGL---EETWLSP---ISPTPEDMEPSPS 397
           GLS G P L       E G   AG + G   VGL   E  W SP     P P+     P 
Sbjct: 34  GLSFGGPQLSTPGQDREAGADTAGGAAGERQVGLQKIEAEWWSPWPICLPHPQ----GPR 89

Query: 398 PPSSGSP--PLGL--------------ESVPSEQSRVSEQSVVSEMQNRG-LGSLFSGSL 440
           PPSS SP  P GL              +  P   S VS +   +  + RG  G    G  
Sbjct: 90  PPSS-SPRWPWGLGDRLLGARASRSGPQEPPPPGSTVSRRKAGNRPRLRGTAGGKAQGPG 148

Query: 441 LPTDPKAALPGSSGAALPSSSA---------GLRL-PRASLPMGVRLL--LLALRDCGPL 488
            P  P + LP      L S +          GLRL PR S   G R     LA       
Sbjct: 149 NPEGPSSLLPRLLPLLLLSGATRDRRRLWGEGLRLAPRRSRDEGRRASPGNLASPGLRLR 208

Query: 489 CPTDSSSIGLKSL--RVSWEVSSMPWEPWRLNWASPVTSSCSLIPRANGERGGD 540
           C  D   +GL+ L  R S  +SS P         S +    S++  AN E G +
Sbjct: 209 CRLDLPGLGLRDLGARSSSVLSSSP---------SELVPELSVLLLANSEEGSE 253


>gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens]
          Length = 703

 Score = 37.4 bits (85), Expect = 0.085
 Identities = 31/67 (46%), Positives = 34/67 (50%), Gaps = 5/67 (7%)

Query: 583 GYRGPGLPGAAPGQ--AVELIGLLRAAGGALQEGQQLPVSRGTQGEAGAAGVRGPVG--G 638
           G   PGLPGA PGQ  A    GL   AG        LP + G +GE+G  GV GP G  G
Sbjct: 209 GVGQPGLPGA-PGQGGAPGPPGLPGPAGLGKPGLDGLPGAPGDKGESGPPGVPGPRGEPG 267

Query: 639 AGGADGP 645
           A G  GP
Sbjct: 268 AVGPKGP 274



 Score = 31.6 bits (70), Expect = 4.7
 Identities = 28/76 (36%), Positives = 31/76 (40%), Gaps = 11/76 (14%)

Query: 583 GYRGPGLPGA----APGQAVELIGLLRAAGGALQEGQQLPVSRG----TQGEAGAAGVRG 634
           GY  PGLPG      P     L+G     G   + G+Q P   G      G AG  G RG
Sbjct: 314 GYGMPGLPGPKGDRGPAGVPGLLGDRGEPGEDGEPGEQGPQGLGGPPGLPGSAGLPGRRG 373

Query: 635 P---VGGAGGADGPGV 647
           P    G AG    PGV
Sbjct: 374 PPGPKGEAGPGGPPGV 389



 Score = 31.2 bits (69), Expect = 6.1
 Identities = 31/97 (31%), Positives = 41/97 (42%), Gaps = 11/97 (11%)

Query: 587 PGLPGAAPGQAVELIGLLRAAGGALQEGQQ-LPVSRGTQGEAGAAGVRGPVGGAGGADGP 645
           PG  G   G  V        AG   Q+G   LP   G +G +G  G++GP G  G    P
Sbjct: 429 PGFTGRPGGPGV--------AGALGQKGDLGLPGQPGLRGPSGIPGLQGPAGPIGPQGLP 480

Query: 646 GVQEREQALCTLLGQ-QLHIILTAAPAKCPQLPSCPG 681
           G+ + E  L    G+ +     TA P   P +P  PG
Sbjct: 481 GL-KGEPGLPGPPGEGRAGEPGTAGPTGPPGVPGSPG 516



 Score = 30.8 bits (68), Expect = 8.0
 Identities = 29/84 (34%), Positives = 34/84 (40%), Gaps = 16/84 (19%)

Query: 581 QAGYRGP-GLPGAAPGQAVELIGLLRAAGGALQEGQQ-LPVSRGTQGEAG---------- 628
           Q G  GP GLPG A      L GL  A G   + G   +P  RG  G  G          
Sbjct: 221 QGGAPGPPGLPGPAGLGKPGLDGLPGAPGDKGESGPPGVPGPRGEPGAVGPKGPPGVDGV 280

Query: 629 ----AAGVRGPVGGAGGADGPGVQ 648
               AAG+ GP G +G    PG +
Sbjct: 281 GVPGAAGLPGPQGPSGAKGEPGTR 304


>gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens]
          Length = 1745

 Score = 37.4 bits (85), Expect = 0.085
 Identities = 28/79 (35%), Positives = 34/79 (43%), Gaps = 12/79 (15%)

Query: 581  QAGYRGPGLPGAAPGQA-----------VELIGLLRAAGGALQEGQQ-LPVSRGTQGEAG 628
            Q G  GP  P   PG             + LIGL+   G A ++G Q LP  +G  G  G
Sbjct: 1377 QMGPPGPLGPSGLPGLKGDTGPKGEKGHIGLIGLIGPPGEAGEKGDQGLPGVQGPPGPKG 1436

Query: 629  AAGVRGPVGGAGGADGPGV 647
              G  GP+G  G    PGV
Sbjct: 1437 DPGPPGPIGSLGHPGPPGV 1455



 Score = 33.5 bits (75), Expect = 1.2
 Identities = 28/84 (33%), Positives = 37/84 (44%), Gaps = 18/84 (21%)

Query: 582 AGYRG----PGLPG--AAPGQAVEL-----IGLLRAAGGALQEGQQ-------LPVSRGT 623
           AG +G    PGLPG    PG    +     +G +   G + + GQ         P SRG 
Sbjct: 781 AGEKGKLGVPGLPGYPGRPGPKGSIGFPGPLGPIGEKGKSGKTGQPGLEGERGPPGSRGE 840

Query: 624 QGEAGAAGVRGPVGGAGGADGPGV 647
           +G+ GA G  GP G  G    PG+
Sbjct: 841 RGQPGATGQPGPKGDVGQDGAPGI 864



 Score = 32.3 bits (72), Expect = 2.7
 Identities = 24/66 (36%), Positives = 30/66 (45%), Gaps = 3/66 (4%)

Query: 583 GYRGPGLPGAAPGQAVELIGLLRAAGGALQEGQQLPVSRGTQGEAGAAGVRGPVGGAGGA 642
           G RGP  P   PG+   L GL    G   + G   P+  G +G AG  G  GP GG G  
Sbjct: 932 GERGPPGPPGPPGEQ-GLPGLEGREGAKGELGPPGPL--GKEGPAGLRGFPGPKGGPGDP 988

Query: 643 DGPGVQ 648
              G++
Sbjct: 989 GPTGLK 994



 Score = 32.0 bits (71), Expect = 3.6
 Identities = 29/84 (34%), Positives = 36/84 (42%), Gaps = 14/84 (16%)

Query: 583  GYRGPGLPGAAPGQAVELIGLLRAAGGAL--QEGQQLPVS----------RGTQGEAGAA 630
            G +GP  P  A G   E   L  A G  L  Q G + PV           RG  G  G  
Sbjct: 995  GDKGPPGPVGANGSPGERGPLGPAGGIGLPGQSGSEGPVGPAGKKGSRGERGPPGPTGKD 1054

Query: 631  GVRGPVG--GAGGADGPGVQEREQ 652
            G+ GP+G  G  GA GP  +E ++
Sbjct: 1055 GIPGPLGPLGPPGAAGPSGEEGDK 1078



 Score = 32.0 bits (71), Expect = 3.6
 Identities = 29/76 (38%), Positives = 37/76 (48%), Gaps = 14/76 (18%)

Query: 583  GYRGPGLPGAAPGQAVEL--IGLLRAAGGALQEGQQLPV-------SRGTQGEAGAAG-- 631
            G RGP  P    G    L  +G   AAG + +EG +  V       S+G +G+AG  G  
Sbjct: 1043 GERGPPGPTGKDGIPGPLGPLGPPGAAGPSGEEGDKGDVGAPGHKGSKGDKGDAGPPGQP 1102

Query: 632  -VRGPVG--GAGGADG 644
             +RGP G  G  GADG
Sbjct: 1103 GIRGPAGHPGPPGADG 1118


>gi|146219832 myosin light chain kinase 3 [Homo sapiens]
          Length = 819

 Score = 37.4 bits (85), Expect = 0.085
 Identities = 51/172 (29%), Positives = 62/172 (36%), Gaps = 35/172 (20%)

Query: 315 PWLRRALPG-LEAPGDASFREPLFGATTSFLLVGLSLGRPP--LQLGSLSTETGAGASPG 371
           P   +A PG L  P     + P     +  L  GL L   P  + + S S E   GA  G
Sbjct: 230 PGPAQAFPGHLPLPTKVEAKAP--ETPSENLRTGLELAPAPGRVNVVSPSLEVAPGAGQG 287

Query: 372 GLDVGLEETWLSPISPTPEDME------PSPSPPSSGSPPL---------GLESVPSEQS 416
                      S   P PE +E      P P P   G P L         G E+ P    
Sbjct: 288 A----------SSSRPDPEPLEEGTRLTPGPGPQCPGPPGLPAQARATHSGGETPPRISI 337

Query: 417 RVSEQSVVSEMQNRGLGSLFSGSLLPTD-PKAALPGSSGAALPSSSAGLRLP 467
            + E     EM   G GSL  G  L T+ P AA PG  G   P +   L+ P
Sbjct: 338 HIQEMDTPGEMLMTGRGSL--GPTLTTEAPAAAQPGKQGP--PGTGRCLQAP 385


>gi|154759255 collagen, type XXVIII precursor [Homo sapiens]
          Length = 1125

 Score = 37.4 bits (85), Expect = 0.085
 Identities = 27/67 (40%), Positives = 33/67 (49%), Gaps = 3/67 (4%)

Query: 583 GYRGP-GLPGAAPGQAVELIGLLRAAGGALQEGQQLPVSRGTQGEAGAAGVRGPVG-GAG 640
           G +GP G+PG        + G +   G     GQ LP S+G  G+ G  G RGPVG G  
Sbjct: 441 GPQGPMGIPGIGSQGEQGIQGPIGPPGPQGPAGQGLPGSKGEVGQMGPTGPRGPVGIGVQ 500

Query: 641 GADG-PG 646
           G  G PG
Sbjct: 501 GPKGEPG 507


>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
          Length = 1464

 Score = 37.0 bits (84), Expect = 0.11
 Identities = 79/287 (27%), Positives = 99/287 (34%), Gaps = 53/287 (18%)

Query: 363 ETGAGASPGGLDVGLEETWLSPISPTPEDMEPSP--SPPSSGSPPLGLESVPSEQSRVSE 420
           E GA   PG            P  P  E  E  P  SP   G P  G    P E  +  E
Sbjct: 615 EAGAQGPPG------------PAGPAGERGEQGPAGSPGFQGLP--GPAGPPGEAGKPGE 660

Query: 421 QSVVSEMQNRGLGSLFSGSLLPTDPKAALPGSSGAALPSSSAGLRLPRASLPMGVRLLLL 480
           Q V  ++   G              +   PG  G   P   AG   PR +   G      
Sbjct: 661 QGVPGDLGAPGPSGARG--------ERGFPGERGVQGPPGPAG---PRGA--NGAPGNDG 707

Query: 481 ALRDCG-PLCPTDSSSIGLKSLRVSWEVSSMPWEPWRLNWASPVTSSCSLIPRANGERGG 539
           A  D G P  P    + GL+ +      + +P        A P  +  S  P  +G RG 
Sbjct: 708 AKGDAGAPGAPGSQGAPGLQGMPGERGAAGLPGPKGDRGDAGPKGADGS--PGKDGVRG- 764

Query: 540 DCAEPRLTGSLYLFRRTLTPWHRALGKAEAWFSGWAAASWLQAGYRGPGLPGAAPGQAVE 599
                 LTG +        P      K E+  SG A  +  +      G PG  PG A  
Sbjct: 765 ------LTGPI----GPPGPAGAPGDKGESGPSGPAGPTGARGAPGDRGEPGP-PGPA-- 811

Query: 600 LIGLLRAAGGALQEGQQLPVSRGTQGEAGAAGVRGPVGGAGGADGPG 646
                  AG    +GQ  P ++G  G+AGA G  GP G AG A  PG
Sbjct: 812 -----GFAGPPGADGQ--PGAKGEPGDAGAKGDAGPPGPAGPAGPPG 851



 Score = 35.8 bits (81), Expect = 0.25
 Identities = 26/65 (40%), Positives = 29/65 (44%), Gaps = 6/65 (9%)

Query: 582 AGYRGPGLPGAAPGQAVELIGLLRAAGGALQEGQQLPVSRGTQGEAGAAGVRGPVGGAGG 641
           AG  GP  P   PG      G + A G A  +G +   S G QG  G  G  GP G AG 
Sbjct: 331 AGPPGPTGPAGPPG----FPGAVGAKGEAGPQGPR--GSEGPQGVRGEPGPPGPAGAAGP 384

Query: 642 ADGPG 646
           A  PG
Sbjct: 385 AGNPG 389



 Score = 35.0 bits (79), Expect = 0.42
 Identities = 72/259 (27%), Positives = 82/259 (31%), Gaps = 75/259 (28%)

Query: 396 PSPPSSGSPP-LGLESVPSEQSRVSEQSVVSEMQNRGLGSLFSGSLLPTDPKAALPGSSG 454
           P PP    PP LG    P       E+S          G    G + P+ P+  LPG  G
Sbjct: 144 PGPPGPPGPPGLGGNFAPQLSYGYDEKSTG--------GISVPGPMGPSGPRG-LPGPPG 194

Query: 455 AALPSSSAGLR----LPRASLPMGVRLLLLALRDCGPLCPTDSSSIGLKSLRVSWEVSSM 510
           A  P    G       P AS PMG R         GP  P   +    ++          
Sbjct: 195 APGPQGFQGPPGEPGEPGASGPMGPR---------GPPGPPGKNGDDGEA---------- 235

Query: 511 PWEPWRLNWASPVTSSCSLIPRANGERG--GDCAEPRLTGSLYLFRRTLTPWHRALGKAE 568
             +P R     P        P   G RG  G    P + G            HR      
Sbjct: 236 -GKPGRPGERGP--------PGPQGARGLPGTAGLPGMKG------------HRG----- 269

Query: 569 AWFSGWAAASWLQAGYRGPGLPGAAPGQAVELIGLLRAAGGALQEGQQ-LPVSRGTQGEA 627
             FSG   A     G  GP  P   PG   E        G   Q G + LP  RG  G  
Sbjct: 270 --FSGLDGAK----GDAGPAGPKGEPGSPGE-------NGAPGQMGPRGLPGERGRPGAP 316

Query: 628 GAAGVRGPVGGAGGADGPG 646
           G AG RG  G  G A  PG
Sbjct: 317 GPAGARGNDGATGAAGPPG 335



 Score = 35.0 bits (79), Expect = 0.42
 Identities = 29/69 (42%), Positives = 33/69 (47%), Gaps = 8/69 (11%)

Query: 582 AGYRG-PGLPG--AAPGQAVELIGLLRAAGGALQEGQQLPV-SRGTQGEAGAAGVRGPVG 637
           AG +G PG PG   APGQ    +G     G   + G   P  +RG  G  GAAG  GP G
Sbjct: 283 AGPKGEPGSPGENGAPGQ----MGPRGLPGERGRPGAPGPAGARGNDGATGAAGPPGPTG 338

Query: 638 GAGGADGPG 646
            AG    PG
Sbjct: 339 PAGPPGFPG 347



 Score = 35.0 bits (79), Expect = 0.42
 Identities = 42/154 (27%), Positives = 55/154 (35%), Gaps = 22/154 (14%)

Query: 322  PGLEAPGDASFREPLFGATTSFLLVGLSLGRPPLQLGSLST-----ETGAGASPGGLDVG 376
            PGL  P   S RE   GA  S           P + GS        ETG    PG     
Sbjct: 1003 PGLAGPPGESGREGAPGAEGS-----------PGRDGSPGAKGDRGETGPAGPPGAPGAP 1051

Query: 377  LEETWLSPISPTPEDMEPSPSPPSSGSPPLGLESVPSEQSRVSEQSVVSEMQNRGLGSL- 435
                 + P   + +  E  P+ P+    P+G       Q    ++    E  +RG+    
Sbjct: 1052 GAPGPVGPAGKSGDRGETGPAGPAGPVGPVGARGPAGPQGPRGDKGETGEQGDRGIKGHR 1111

Query: 436  -FSGSLLPTDPKAALPGSSGAALPSSSAGLRLPR 468
             FSG   P  P    PGS G   PS ++G   PR
Sbjct: 1112 GFSGLQGPPGP----PGSPGEQGPSGASGPAGPR 1141



 Score = 34.7 bits (78), Expect = 0.55
 Identities = 31/73 (42%), Positives = 36/73 (49%), Gaps = 10/73 (13%)

Query: 581 QAGYRG-PGLPGAA--PGQAVE--LIGLLRAAGGALQEGQQLPVSRGTQGEAGAAGVRGP 635
           QAG  G PG  GAA  PG+A E  + G   A G A ++G+      G QG  G AG  G 
Sbjct: 576 QAGVMGFPGPKGAAGEPGKAGERGVPGPPGAVGPAGKDGEA-----GAQGPPGPAGPAGE 630

Query: 636 VGGAGGADGPGVQ 648
            G  G A  PG Q
Sbjct: 631 RGEQGPAGSPGFQ 643



 Score = 33.5 bits (75), Expect = 1.2
 Identities = 26/71 (36%), Positives = 29/71 (40%), Gaps = 5/71 (7%)

Query: 582 AGYRGPGLPGAAPGQAVELIGLLRAAGGALQEGQQLPV-SRGTQGEAGAAGVRGPVGGAG 640
           AG  GP  P   PG     IG + A G     G   P  + G  G AG  G  GP G AG
Sbjct: 838 AGPPGPAGPAGPPGP----IGNVGAPGAKGARGSAGPPGATGFPGAAGRVGPPGPSGNAG 893

Query: 641 GADGPGVQERE 651
               PG   +E
Sbjct: 894 PPGPPGPAGKE 904



 Score = 33.1 bits (74), Expect = 1.6
 Identities = 89/297 (29%), Positives = 103/297 (34%), Gaps = 54/297 (18%)

Query: 373 LDVGLEETWLSPISPTPEDMEPS-----PSPPSSGSP-PLGLESVPSEQSRVSEQSVVSE 426
           L  G +E     IS  P  M PS     P PP  G+P P G +  P E     E      
Sbjct: 163 LSYGYDEKSTGGIS-VPGPMGPSGPRGLPGPP--GAPGPQGFQGPPGEPG---EPGASGP 216

Query: 427 MQNRGLGSLFSGSLLPTDPKAALPGSSGAALPSSSAGLR-LP-RASLP-----MGVRLLL 479
           M  RG       +    D +A  PG  G   P    G R LP  A LP      G   L 
Sbjct: 217 MGPRGPPGPPGKN--GDDGEAGKPGRPGERGPPGPQGARGLPGTAGLPGMKGHRGFSGLD 274

Query: 480 LALRDCGPLCPT-DSSSIGLKSLRVSWEVSSMPWEPWRLNWASPVTSSCSLIPRANGERG 538
            A  D GP  P  +  S G            +P E  R     P  +      R N    
Sbjct: 275 GAKGDAGPAGPKGEPGSPGENGAPGQMGPRGLPGERGRPGAPGPAGA------RGNDGAT 328

Query: 539 GDCAEPRLTGSLYLFRRTLTPWHRALG-KAEAWFSGWAAASWLQAGYRG-PGLPGAAPGQ 596
           G    P  TG           +  A+G K EA   G   +   Q G RG PG PG A   
Sbjct: 329 GAAGPPGPTGPA-----GPPGFPGAVGAKGEAGPQGPRGSEGPQ-GVRGEPGPPGPA--- 379

Query: 597 AVELIGLLRAAGGALQEGQQLPVSRGTQGEAGAA------GVRGPVG--GAGGADGP 645
                G    AG    +GQ  P ++G  G  G A      G RGP G  G GG  GP
Sbjct: 380 -----GAAGPAGNPGADGQ--PGAKGANGAPGIAGAPGFPGARGPSGPQGPGGPPGP 429



 Score = 32.3 bits (72), Expect = 2.7
 Identities = 26/65 (40%), Positives = 27/65 (41%), Gaps = 11/65 (16%)

Query: 583  GYRGPGLPGAAPGQAVELIGLLRAAGGALQEGQQLPVSRGTQGEAGAAGVRGPVG--GAG 640
            G  GP  P  APG      G     G A + G      RG  G AG AG  GPVG  G  
Sbjct: 1037 GETGPAGPPGAPGAP----GAPGPVGPAGKSGD-----RGETGPAGPAGPVGPVGARGPA 1087

Query: 641  GADGP 645
            G  GP
Sbjct: 1088 GPQGP 1092



 Score = 32.3 bits (72), Expect = 2.7
 Identities = 26/70 (37%), Positives = 29/70 (41%), Gaps = 6/70 (8%)

Query: 583  GYRGPGLPGAAPGQAVEL-----IGLLRAAG-GALQEGQQLPVSRGTQGEAGAAGVRGPV 636
            G RGP  P    G   E       G+    G   LQ     P S G QG +GA+G  GP 
Sbjct: 1082 GARGPAGPQGPRGDKGETGEQGDRGIKGHRGFSGLQGPPGPPGSPGEQGPSGASGPAGPR 1141

Query: 637  GGAGGADGPG 646
            G  G A  PG
Sbjct: 1142 GPPGSAGAPG 1151



 Score = 31.6 bits (70), Expect = 4.7
 Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 9/64 (14%)

Query: 587 PGLPGAAPGQAVE----LIGLLRAAGGALQEGQQLPVSRGTQGEAGAAGVRGPVGGAGGA 642
           PG PG+      +     +G+    G A +EG+     RG +GE G  G+ GP G  GG 
Sbjct: 436 PGAPGSKGDTGAKGEPGPVGVQGPPGPAGEEGK-----RGARGEPGPTGLPGPPGERGGP 490

Query: 643 DGPG 646
              G
Sbjct: 491 GSRG 494



 Score = 30.8 bits (68), Expect = 8.0
 Identities = 25/71 (35%), Positives = 31/71 (43%), Gaps = 18/71 (25%)

Query: 581  QAGYRG-PGLPGAA--PGQAVELIGLLRAAGGALQEGQQLPVSRGTQGEAGAAGVRGPVG 637
            Q G RG PGLPG +  PG+        +   GA  E       RG  G  G  G+ GP G
Sbjct: 966  QRGERGFPGLPGPSGEPGK--------QGPSGASGE-------RGPPGPMGPPGLAGPPG 1010

Query: 638  GAGGADGPGVQ 648
             +G    PG +
Sbjct: 1011 ESGREGAPGAE 1021


>gi|119829187 alpha 1 type XVII collagen [Homo sapiens]
          Length = 1497

 Score = 37.0 bits (84), Expect = 0.11
 Identities = 26/60 (43%), Positives = 31/60 (51%), Gaps = 7/60 (11%)

Query: 588 GLPGAAPGQAVELIGLLRAAGGALQEGQQLPVSRGTQGEAGAAGVRGPVGGAGGADGPGV 647
           GLPGA  G+     G   A G A  +G Q P  RG QG  G  G+RGP G +G    PG+
Sbjct: 728 GLPGAV-GEP----GAKGAMGPAGPDGHQGP--RGEQGLTGMPGIRGPPGPSGDPGKPGL 780



 Score = 31.6 bits (70), Expect = 4.7
 Identities = 26/80 (32%), Positives = 36/80 (45%), Gaps = 6/80 (7%)

Query: 582 AGYRGPGLPGAAPGQAVELIGLLRAAGGALQEGQQLPVS-RGTQGEAGAAGVRGPVGGAG 640
           AG  GP  P   PG     +G   ++G    +G   PV  +G +GE G  GV+G  G   
Sbjct: 649 AGEPGPHGPPGVPGS----VGPKGSSGSPGPQGPPGPVGLQGLRGEVGLPGVKGDKGPM- 703

Query: 641 GADGPGVQEREQALCTLLGQ 660
           G  GP   + E+    L G+
Sbjct: 704 GPPGPKGDQGEKGPRGLTGE 723


>gi|29725624 collagen, type XXIII, alpha 1 [Homo sapiens]
          Length = 540

 Score = 37.0 bits (84), Expect = 0.11
 Identities = 35/106 (33%), Positives = 48/106 (45%), Gaps = 11/106 (10%)

Query: 583 GYRGPGLPGAAPGQAVELIGLLRAAGGALQEGQQLPVSRGTQGEAGAAGVRGPVG----- 637
           G +GP  P   PG   EL GL  A G   ++G +    +G  GE G AG++G  G     
Sbjct: 324 GPQGPPGPPGIPGAKGEL-GLPGAPGIDGEKGPK--GQKGDPGEPGPAGLKGEAGEMGLS 380

Query: 638 GAGGADGPGVQEREQALCTLLGQQLHIILTAAPAKCPQLPSCPGAL 683
           G  GADG   ++ E A  +L      +I+   P   P  P  PG +
Sbjct: 381 GLPGADGLKGEKGESASDSLQESLAQLIVEPGP---PGPPGPPGPM 423


>gi|88702793 slit-like 2 [Homo sapiens]
          Length = 673

 Score = 37.0 bits (84), Expect = 0.11
 Identities = 51/202 (25%), Positives = 75/202 (37%), Gaps = 13/202 (6%)

Query: 315 PWLRRALPGLEAPGDASFREPLFGATTSFLLVGLS-LGRPPLQL-GSLSTETGAGASPGG 372
           PW+R +   L +P +     P   A    L +  +  G P      ++ T       P  
Sbjct: 311 PWVRESHVTLASPEETRCHFPPKNAGRLLLELDYADFGCPATTTTATVPTTRPVVREPTA 370

Query: 373 LDVGLEETWLSPISPTPEDMEPSPSPPSSGSPPLGLESVPSEQSRVSEQSVVSEMQNRGL 432
           L   L  TWLSP  P  E    +PSPPS+  P +G    P  Q +    S         L
Sbjct: 371 LSSSLAPTWLSPTEPATE----APSPPSTAPPTVG----PVPQPQDCPPSTCLNGGTCHL 422

Query: 433 GSLFSGSLLPTDPKAALPGSS---GAALPSSSAGLRLPRASLPMGVRLLLLALRDCGPLC 489
           G+    + L  +    L   S       PS +     P  SL +G+  +       G   
Sbjct: 423 GTRHHLACLCPEGFTGLYCESQMGQGTRPSPTPVTPRPPRSLTLGIEPVSPTSLRVGLQR 482

Query: 490 PTDSSSIGLKSLRVSWEVSSMP 511
               SS+ L+SLR+++   S P
Sbjct: 483 YLQGSSVQLRSLRLTYRNLSGP 504


>gi|157502197 hypothetical protein LOC9772 [Homo sapiens]
          Length = 1356

 Score = 37.0 bits (84), Expect = 0.11
 Identities = 37/114 (32%), Positives = 49/114 (42%), Gaps = 3/114 (2%)

Query: 375 VGLEETWLSPISPTPE-DMEPSPSPPSSGSPPLGLESVPSEQSRVSEQSVVSEMQNRGLG 433
           +GLE  W   IS TP  DM  S  PPSS S    L    ++ SR   + ++  M+  G  
Sbjct: 869 MGLETGWNCHISLTPNGDMPGSEIPPSSPSHAGSLHDDLNQVSRDDAEGLLL-MEEEGHS 927

Query: 434 SLFSGSLLPTDPKAALPGSSGAALPSSSAGLRLPRASLPMGVRLLLLALRDCGP 487
            L S     +D  + L  S+ A LP     +R P       V LL+    DC P
Sbjct: 928 DLISFQPTDSDIPSFLEDSNRAKLPRGIHQVR-PHLQNIDNVPLLVPLFTDCTP 980


>gi|122937269 Wilms tumor 1 interacting protein [Homo sapiens]
          Length = 430

 Score = 37.0 bits (84), Expect = 0.11
 Identities = 36/125 (28%), Positives = 48/125 (38%), Gaps = 22/125 (17%)

Query: 351 GRPPLQL-GSLSTETGAGASPGGLDVGLEETWLSPISPTPEDMEPSPSPPSSGSPPLGLE 409
           G P   L GS     G  A   G+ +G ++   SP S    D  P P PPS G       
Sbjct: 87  GSPRASLAGSDGGGGGGSARSSGISLGYDQRHGSPRSGR-SDPRPGPGPPSVG------- 138

Query: 410 SVPSEQSRVSEQSVVSEMQNRGLGSLFSGSLLPTDPKAALPGSSGAALPSSSAGLRLPRA 469
                    S +S VS + +RG    ++  L    P  A P  + +  P+  A   LP  
Sbjct: 139 ---------SARSSVSSLGSRGSAGAYADFL----PPGACPAPARSPEPAGPAPFPLPAL 185

Query: 470 SLPMG 474
            LP G
Sbjct: 186 PLPPG 190


>gi|238859655 tetratricopeptide repeat domain 31 [Homo sapiens]
          Length = 519

 Score = 36.6 bits (83), Expect = 0.14
 Identities = 59/232 (25%), Positives = 85/232 (36%), Gaps = 12/232 (5%)

Query: 322 PGLEAPGDASFREPLFGATTSFLLVGL-SLGRPPLQLGSLSTETGAGASPGGLDVGLEET 380
           PG    G     E     +++F+ + L  +G  PL   S   E G    P G  + L++ 
Sbjct: 216 PGNPVQGQCGEEEDSLDLSSTFVSLALRKVGDWPL---SARREKGLNQEPQGRGLALQKM 272

Query: 381 WLSPISPTPEDMEPSPSPPSSGSPPLGLESVPSEQSRVSEQSVVSEMQNRGLGSLFSGSL 440
                SP P +  P  SP    SP  GL +   +QS+   +   S  QN   G      +
Sbjct: 273 GQEEESP-PREERPQQSPKVQASP--GLLAAALQQSQELAKLGTSFAQN---GFYHEAVV 326

Query: 441 LPTDPKAALPGSSGAALPSSSAGLRLPRASLPMGVRLLLLALRDCGP--LCPTDSSSIGL 498
           L T      P         S    RL + +  +    + L LR   P  L     + +GL
Sbjct: 327 LFTQALKLNPQDHRLFGNRSFCHERLGQPAWALADAQVALTLRPGWPRGLFRLGKALMGL 386

Query: 499 KSLRVSWEVSSMPWEPWRLNWASPVTSSCSLIPRANGERGGDCAEPRLTGSL 550
           +  R +  V            A+    SC L     G+RGG CA P   G+L
Sbjct: 387 QRFREAAAVFQETLRGGSQPDAARELRSCLLHLTLQGQRGGICAPPLSPGAL 438


>gi|169173184 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 1230

 Score = 36.6 bits (83), Expect = 0.14
 Identities = 53/185 (28%), Positives = 71/185 (38%), Gaps = 43/185 (23%)

Query: 419 SEQSVVSEMQNRGLGS-LFSGSLLPTDPKAALPGSSGAALPSSS--AGLRLPRASLPMGV 475
           S  S  S   N G  S   SG+ +P+D   A P +SGA+ PS+S  A      AS+P   
Sbjct: 23  SSASGASTPSNSGWASPSASGASIPSDSGWASPSASGASTPSNSGWASFSASWASIP--- 79

Query: 476 RLLLLALRDCGPLCPTDSSSIGLKSLRVSWEVSSMPWEPWRLNWASPVTSSCSLIPRANG 535
                             S  G  S   SW  +     P    WASP  S  S IP  +G
Sbjct: 80  ------------------SDSGWASPSASWAST-----PSDSGWASPSASGAS-IPSDSG 115

Query: 536 ERGGDCAEPRLTGSLYLFRRTLTPWHRALGKAEAWFSGWA--AASWL----QAGYRGPGL 589
                 A P ++G+        +P   A G +    SGWA  +ASW      +G+  P  
Sbjct: 116 -----WASPSVSGASIPSAFWASP--SASGASTPSDSGWASPSASWASTSSDSGWASPSA 168

Query: 590 PGAAP 594
              +P
Sbjct: 169 SWTSP 173


>gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein [Homo
            sapiens]
          Length = 1650

 Score = 36.2 bits (82), Expect = 0.19
 Identities = 43/122 (35%), Positives = 51/122 (41%), Gaps = 15/122 (12%)

Query: 533  ANGERGGDCAEPRLTGSLYLFRRTLTPWHRALGKAEAWFSGWAAASWLQAGYRGPGLPGA 592
            A G+RG D  EP   GS         P    LGK     +G   +   Q G    G PGA
Sbjct: 1203 AKGDRGED-GEPGQPGSPGPTGENGPPG--PLGKRGP--AGSPGSEGRQGGKGAKGDPGA 1257

Query: 593  --APGQAVELIGLLRAAGGALQEGQQ----LPVSRGTQGEAGAAGVRGPVGGAGGADGPG 646
              APG+     G +  AG A + G      LP S G QG  GA G  GP G  G    PG
Sbjct: 1258 IGAPGKT----GPVGPAGPAGKPGPDGLRGLPGSVGQQGRPGATGQAGPPGPVGPPGLPG 1313

Query: 647  VQ 648
            ++
Sbjct: 1314 LR 1315



 Score = 35.0 bits (79), Expect = 0.42
 Identities = 46/151 (30%), Positives = 63/151 (41%), Gaps = 48/151 (31%)

Query: 581  QAGYRGP----GLPG-----AAPGQAVE--LIGLLRAAGGALQEGQQ-LPVSRGT---QG 625
            QAG  GP    GLPG      A G+     LIGL+   G   ++G + LP  +G+   +G
Sbjct: 1299 QAGPPGPVGPPGLPGLRGDAGAKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSPGQKG 1358

Query: 626  EAGAAGVRGPVG--------------GAGGADGPGVQEREQALCTLLGQQLHIILTAAPA 671
            E G  G  GP+G              GA GA GPG  + E+ +               P 
Sbjct: 1359 EMGIPGASGPIGPGGPPGLPGPAGPKGAKGATGPGGPKGEKGV-------------QGP- 1404

Query: 672  KCPQLPSCPGALLLLLLLQPLQLPQLLRLPV 702
              P  P  PG ++  L   P+Q+P+  R  V
Sbjct: 1405 --PGHPGPPGEVIQPL---PIQMPKKTRRSV 1430



 Score = 34.7 bits (78), Expect = 0.55
 Identities = 25/67 (37%), Positives = 32/67 (47%), Gaps = 6/67 (8%)

Query: 581 QAGYRGPGLPGAAPGQAVELIGLLRAAGGALQEGQQLPVSRGTQGEAGAAGVRGPVGGAG 640
           + G  G G P   PG+     G     G A ++G  +P  +G  G  G  GV+GPVG  G
Sbjct: 933 ERGAAGSGGPIGPPGRP----GPQGPPGAAGEKG--VPGEKGPIGPTGRDGVQGPVGLPG 986

Query: 641 GADGPGV 647
            A  PGV
Sbjct: 987 PAGPPGV 993



 Score = 32.7 bits (73), Expect = 2.1
 Identities = 27/73 (36%), Positives = 32/73 (43%), Gaps = 18/73 (24%)

Query: 587 PGLPG--------AAPGQAVELIGLLRAAGGALQEGQQLPVS----RGTQGEAGAAGVRG 634
           PG PG          PG+     GL   AGG   +G + P       G+ GE GAAG  G
Sbjct: 886 PGAPGKDGPAGLRGFPGER----GLPGTAGGPGLKGNEGPSGPPGPAGSPGERGAAGSGG 941

Query: 635 PVG--GAGGADGP 645
           P+G  G  G  GP
Sbjct: 942 PIGPPGRPGPQGP 954



 Score = 31.6 bits (70), Expect = 4.7
 Identities = 31/78 (39%), Positives = 36/78 (46%), Gaps = 21/78 (26%)

Query: 583  GYRGP-GLPGAA--PGQAVELIGLLRAAGGALQEGQQLPVSRGTQGEAGAAGVRGPVG-- 637
            G +GP GLPG A  PG A E        G   + G   P  +GT+G  G  G  GP G  
Sbjct: 977  GVQGPVGLPGPAGPPGVAGE-------DGDKGEVGD--PGQKGTKGNKGEHGPPGPPGPI 1027

Query: 638  ------GAGGADG-PGVQ 648
                  GA GADG PG +
Sbjct: 1028 GPVGQPGAAGADGEPGAR 1045



 Score = 31.2 bits (69), Expect = 6.1
 Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 3/61 (4%)

Query: 587 PGLPGAAPGQAVELIGLLRAAGGALQEGQQLPVS-RGTQGEAGAAGVRGPVGGAGGADGP 645
           PG PGA+  +     GL   +G   + G   P   RG +G  G +G +G  GG G    P
Sbjct: 730 PGFPGASGEKGAR--GLSGKSGPRGERGPTGPRGQRGPRGATGKSGAKGTSGGDGPHGPP 787

Query: 646 G 646
           G
Sbjct: 788 G 788


>gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein [Homo
            sapiens]
          Length = 1629

 Score = 36.2 bits (82), Expect = 0.19
 Identities = 43/122 (35%), Positives = 51/122 (41%), Gaps = 15/122 (12%)

Query: 533  ANGERGGDCAEPRLTGSLYLFRRTLTPWHRALGKAEAWFSGWAAASWLQAGYRGPGLPGA 592
            A G+RG D  EP   GS         P    LGK     +G   +   Q G    G PGA
Sbjct: 1182 AKGDRGED-GEPGQPGSPGPTGENGPPG--PLGKRGP--AGSPGSEGRQGGKGAKGDPGA 1236

Query: 593  --APGQAVELIGLLRAAGGALQEGQQ----LPVSRGTQGEAGAAGVRGPVGGAGGADGPG 646
              APG+     G +  AG A + G      LP S G QG  GA G  GP G  G    PG
Sbjct: 1237 IGAPGKT----GPVGPAGPAGKPGPDGLRGLPGSVGQQGRPGATGQAGPPGPVGPPGLPG 1292

Query: 647  VQ 648
            ++
Sbjct: 1293 LR 1294



 Score = 35.0 bits (79), Expect = 0.42
 Identities = 46/151 (30%), Positives = 63/151 (41%), Gaps = 48/151 (31%)

Query: 581  QAGYRGP----GLPG-----AAPGQAVE--LIGLLRAAGGALQEGQQ-LPVSRGT---QG 625
            QAG  GP    GLPG      A G+     LIGL+   G   ++G + LP  +G+   +G
Sbjct: 1278 QAGPPGPVGPPGLPGLRGDAGAKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSPGQKG 1337

Query: 626  EAGAAGVRGPVG--------------GAGGADGPGVQEREQALCTLLGQQLHIILTAAPA 671
            E G  G  GP+G              GA GA GPG  + E+ +               P 
Sbjct: 1338 EMGIPGASGPIGPGGPPGLPGPAGPKGAKGATGPGGPKGEKGV-------------QGP- 1383

Query: 672  KCPQLPSCPGALLLLLLLQPLQLPQLLRLPV 702
              P  P  PG ++  L   P+Q+P+  R  V
Sbjct: 1384 --PGHPGPPGEVIQPL---PIQMPKKTRRSV 1409



 Score = 34.7 bits (78), Expect = 0.55
 Identities = 25/67 (37%), Positives = 32/67 (47%), Gaps = 6/67 (8%)

Query: 581 QAGYRGPGLPGAAPGQAVELIGLLRAAGGALQEGQQLPVSRGTQGEAGAAGVRGPVGGAG 640
           + G  G G P   PG+     G     G A ++G  +P  +G  G  G  GV+GPVG  G
Sbjct: 912 ERGAAGSGGPIGPPGRP----GPQGPPGAAGEKG--VPGEKGPIGPTGRDGVQGPVGLPG 965

Query: 641 GADGPGV 647
            A  PGV
Sbjct: 966 PAGPPGV 972



 Score = 32.7 bits (73), Expect = 2.1
 Identities = 27/73 (36%), Positives = 32/73 (43%), Gaps = 18/73 (24%)

Query: 587 PGLPG--------AAPGQAVELIGLLRAAGGALQEGQQLPVS----RGTQGEAGAAGVRG 634
           PG PG          PG+     GL   AGG   +G + P       G+ GE GAAG  G
Sbjct: 865 PGAPGKDGPAGLRGFPGER----GLPGTAGGPGLKGNEGPSGPPGPAGSPGERGAAGSGG 920

Query: 635 PVG--GAGGADGP 645
           P+G  G  G  GP
Sbjct: 921 PIGPPGRPGPQGP 933



 Score = 31.6 bits (70), Expect = 4.7
 Identities = 31/78 (39%), Positives = 36/78 (46%), Gaps = 21/78 (26%)

Query: 583  GYRGP-GLPGAA--PGQAVELIGLLRAAGGALQEGQQLPVSRGTQGEAGAAGVRGPVG-- 637
            G +GP GLPG A  PG A E        G   + G   P  +GT+G  G  G  GP G  
Sbjct: 956  GVQGPVGLPGPAGPPGVAGE-------DGDKGEVGD--PGQKGTKGNKGEHGPPGPPGPI 1006

Query: 638  ------GAGGADG-PGVQ 648
                  GA GADG PG +
Sbjct: 1007 GPVGQPGAAGADGEPGAR 1024



 Score = 31.2 bits (69), Expect = 6.1
 Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 3/61 (4%)

Query: 587 PGLPGAAPGQAVELIGLLRAAGGALQEGQQLPVS-RGTQGEAGAAGVRGPVGGAGGADGP 645
           PG PGA+  +     GL   +G   + G   P   RG +G  G +G +G  GG G    P
Sbjct: 709 PGFPGASGEKGAR--GLSGKSGPRGERGPTGPRGQRGPRGATGKSGAKGTSGGDGPHGPP 766

Query: 646 G 646
           G
Sbjct: 767 G 767


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.319    0.137    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,114,667
Number of Sequences: 37866
Number of extensions: 2676377
Number of successful extensions: 15508
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 261
Number of HSP's that attempted gapping in prelim test: 11938
Number of HSP's gapped (non-prelim): 3415
length of query: 1179
length of database: 18,247,518
effective HSP length: 113
effective length of query: 1066
effective length of database: 13,968,660
effective search space: 14890591560
effective search space used: 14890591560
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 68 (30.8 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press