Guide to the Human Genome
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Name: VASN Sequence: fasta or formatted (673aa) NCBI GI: 88702793
Description:

slit-like 2

Referenced in:

Leucine-rich Repeat Family

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.9         60           4
 C cysteine            2.8         19           1
 D aspartate           3.3         22           1
 E glutamate           5.2         35           2
 F phenylalanine       2.1         14           1
 G glycine             8.8         59           3
 H histidine           1.9         13           2
 I isoleucine          1.6         11           1
 K lysine              1.2          8           1
 L leucine            16.9        114           5
 M methionine          0.9          6           1
 N asparagine          3.3         22           1
 P proline            11.1         75           2
 Q glutamine           4.3         29           2
 R arginine            7.3         49           2
 S serine              5.9         40           3
 T threonine           6.7         45           4
 V valine              5.8         39           2
 W tryptophan          0.4          3           1
 Y tyrosine            1.5         10           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   slit-like 2 
LRRC4                 0.086   leucine rich repeat containing 4 
LRRC4B                0.083   leucine rich repeat containing 4B 
KIAA0644              0.081   hypothetical protein LOC9865 
LRRC4C                0.080   netrin-G1 ligand 
CHADL                 0.079   chondroadherin-like 
LRFN4                 0.078   leucine rich repeat and fibronectin type III domain ...
LRRC15                0.076   leucine rich repeat containing 15 isoform a 
LRRC15                0.076   leucine rich repeat containing 15 isoform b 
RTN4RL2               0.076   reticulon 4 receptor-like 2 
GP5                   0.075   glycoprotein V (platelet) 
LINGO3                0.074   leucine rich repeat and Ig domain containing 3 [Hom...
FLRT2                 0.071   fibronectin leucine rich transmembrane protein 2 [Hom...
LRRN2                 0.071   leucine rich repeat neuronal 2 
LRRN2                 0.071   leucine rich repeat neuronal 2 
LRRC70                0.070   synleurin 
LINGO4                0.069   leucine rich repeat and Ig domain containing 4 [Homo...
CHAD                  0.067   chondroadherin precursor 
CPN2                  0.065   carboxypeptidase N, polypeptide 2, 83kD 
LRRC24                0.064   leucine rich repeat containing 24 
LRRTM3                0.062   leucine rich repeat transmembrane neuronal 3 
FLRT3                 0.062   fibronectin leucine rich transmembrane protein 3 pre...
FLRT3                 0.062   fibronectin leucine rich transmembrane protein 3 prec...
LRFN3                 0.062   leucine rich repeat and fibronectin type III domain ...
LRIG2                 0.062   leucine-rich repeats and immunoglobulin-like domains ...
LRRTM2                0.061   leucine rich repeat transmembrane neuronal 2 
IGFALS                0.061   insulin-like growth factor binding protein, acid la...
IGFALS                0.061   insulin-like growth factor binding protein, acid labi...
LRRN3                 0.061   leucine rich repeat neuronal 3 
LRRN3                 0.061   leucine rich repeat neuronal 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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