Guide to the Human Genome
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Name: LOC100290935 Sequence: fasta or formatted (270aa) NCBI GI: 239752184
Description:

PREDICTED: hypothetical protein XP_002348161

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.0         19           2
 C cysteine            1.5          4           1
 D aspartate           4.4         12           2
 E glutamate           5.2         14           2
 F phenylalanine       0.4          1           1
 G glycine            14.1         38           2
 H histidine           0.7          2           1
 I isoleucine          2.6          7           2
 K lysine              1.5          4           1
 L leucine            14.1         38           4
 M methionine          0.4          1           1
 N asparagine          1.5          4           1
 P proline            12.6         34           4
 Q glutamine           3.7         10           1
 R arginine           10.7         29           3
 S serine             11.1         30           3
 T threonine           2.2          6           1
 V valine              3.0          8           1
 W tryptophan          3.3          9           2
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002348161 
LOC100293059          1.000   PREDICTED: hypothetical protein 
LOC100287291          1.000   PREDICTED: hypothetical protein XP_002343834 
PRB1                  0.037   proline-rich protein BstNI subfamily 1 isoform 3 pre...
PRB1                  0.037   proline-rich protein BstNI subfamily 1 isoform 2 pre...
PRB2                  0.035   proline-rich protein BstNI subfamily 2 
PRB1                  0.035   proline-rich protein BstNI subfamily 1 isoform 1 pre...
LOC100293055          0.034   PREDICTED: similar to COL22A1 protein 
COL1A1                0.030   alpha 1 type I collagen preproprotein 
LOC100130897          0.030   PREDICTED: hypothetical protein 
LOC100130897          0.030   PREDICTED: hypothetical protein 
COL22A1               0.028   collagen, type XXII, alpha 1 
EWSR1                 0.028   Ewing sarcoma breakpoint region 1 isoform 4 
EWSR1                 0.028   Ewing sarcoma breakpoint region 1 isoform 3 
EWSR1                 0.028   Ewing sarcoma breakpoint region 1 isoform 1 
EWSR1                 0.028   Ewing sarcoma breakpoint region 1 isoform 2 
COL3A1                0.026   collagen type III alpha 1 preproprotein 
COL5A1                0.026   alpha 1 type V collagen preproprotein 
COL7A1                0.026   alpha 1 type VII collagen precursor 
C9orf86               0.024   Rab-like GTP-binding protein 1 isoform 1 
COL11A1               0.024   alpha 1 type XI collagen isoform B preproprotein [Ho...
COL11A1               0.024   alpha 1 type XI collagen isoform C preproprotein [Ho...
COL11A1               0.024   alpha 1 type XI collagen isoform A preproprotein [Ho...
PRR12                 0.024   proline rich 12 
RAB11FIP3             0.022   rab11-family interacting protein 3 isoform 1 
RANBP9                0.022   RAN binding protein 9 
LOC100127891          0.022   PREDICTED: hypothetical protein 
BSN                   0.022   bassoon protein 
ZCCHC2                0.022   zinc finger, CCHC domain containing 2 
C1QTNF2               0.022   C1q and tumor necrosis factor related protein 2 [Hom...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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