Guide to the Human Genome
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Name: TTC31 Sequence: fasta or formatted (519aa) NCBI GI: 238859655
Description:

tetratricopeptide repeat domain 31

Referenced in:

Tetratricopeptide Domains

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.9         41           3
 C cysteine            2.3         12           1
 D aspartate           4.0         21           2
 E glutamate           7.9         41           3
 F phenylalanine       2.5         13           1
 G glycine             8.5         44           2
 H histidine           2.9         15           2
 I isoleucine          1.2          6           1
 K lysine              5.2         27           3
 L leucine            13.5         70           2
 M methionine          1.0          5           1
 N asparagine          1.3          7           1
 P proline             9.2         48           2
 Q glutamine           7.7         40           2
 R arginine            7.7         40           2
 S serine              8.7         45           2
 T threonine           2.9         15           2
 V valine              3.3         17           2
 W tryptophan          1.0          5           1
 Y tyrosine            1.3          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   tetratricopeptide repeat domain 31 
TTC28                 0.038   tetratricopeptide repeat domain 28 
STIP1                 0.034   stress-induced-phosphoprotein 1 (Hsp70/Hsp90-organizi...
PPP5C                 0.030   protein phosphatase 5, catalytic subunit 
TTC3                  0.025   tetratricopeptide repeat domain 3 
TTC3                  0.025   tetratricopeptide repeat domain 3 
SGTA                  0.024   small glutamine-rich tetratricopeptide 
SGTB                  0.024   small glutamine-rich tetratricopeptide repeat (TPR)-...
LONRF3                0.023   LON peptidase N-terminal domain and ring finger 3 is...
PEX5                  0.022   peroxisomal biogenesis factor 5 isoform d 
PEX5                  0.022   peroxisomal biogenesis factor 5 isoform d 
PEX5                  0.022   peroxisomal biogenesis factor 5 isoform c 
PEX5                  0.022   peroxisomal biogenesis factor 5 isoform a 
PEX5                  0.022   peroxisomal biogenesis factor 5 isoform b 
TAF3                  0.021   RNA polymerase II transcription factor TAFII140 [Ho...
DNAJC7                0.020   DnaJ (Hsp40) homolog, subfamily C, member 7 isoform...
RPAP3                 0.019   RNA polymerase II associated protein 3 isoform 2 [H...
RPAP3                 0.019   RNA polymerase II associated protein 3 isoform 1 [H...
TOMM70A               0.018   translocase of outer mitochondrial membrane 70 homol...
PEX5L                 0.018   peroxisomal biogenesis factor 5-like 
TCHH                  0.017   trichohyalin 
TTC33                 0.017   tetratricopeptide repeat domain 33 
UNC45A                0.017   smooth muscle cell associated protein-1 isoform 2 [H...
PLEC1                 0.016   plectin 1 isoform 11 
PLEC1                 0.016   plectin 1 isoform 10 
PLEC1                 0.016   plectin 1 isoform 8 
PLEC1                 0.016   plectin 1 isoform 7 
PLEC1                 0.016   plectin 1 isoform 6 
PLEC1                 0.016   plectin 1 isoform 3 
PLEC1                 0.016   plectin 1 isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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