Guide to the Human Genome
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Name: LOC100287377 Sequence: fasta or formatted (889aa) NCBI GI: 239742434
Description:

PREDICTED: hypothetical protein XP_002342514

Not currently referenced in the text

Other entries for this name:
alt mRNA {889aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.1         72           3
 C cysteine            1.9         17           1
 D aspartate           2.5         22           2
 E glutamate           5.6         50           3
 F phenylalanine       3.7         33           2
 G glycine            11.6        103           2
 H histidine           1.9         17           2
 I isoleucine          1.6         14           2
 K lysine              3.0         27           2
 L leucine            15.1        134           7
 M methionine          1.5         13           1
 N asparagine          1.7         15           2
 P proline             8.0         71           2
 Q glutamine           4.3         38           2
 R arginine            7.3         65           3
 S serine              9.8         87           3
 T threonine           4.6         41           2
 V valine              5.2         46           3
 W tryptophan          1.8         16           1
 Y tyrosine            0.9          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002342514 
LOC100287377          1.000   PREDICTED: hypothetical protein 
LOC100292392          0.860   PREDICTED: hypothetical protein 
COL1A2                0.010   alpha 2 type I collagen 
COL4A2                0.010   alpha 2 type IV collagen preproprotein 
TRNP1                 0.008   TMF regulated nuclear protein 
COL22A1               0.008   collagen, type XXII, alpha 1 
COL7A1                0.008   alpha 1 type VII collagen precursor 
COL9A2                0.008   alpha 2 type IX collagen 
COL11A1               0.007   alpha 1 type XI collagen isoform B preproprotein [Ho...
COL11A1               0.007   alpha 1 type XI collagen isoform C preproprotein [Ho...
COL11A1               0.007   alpha 1 type XI collagen isoform A preproprotein [Ho...
COL3A1                0.007   collagen type III alpha 1 preproprotein 
LOC100293059          0.007   PREDICTED: hypothetical protein 
LOC100290935          0.007   PREDICTED: hypothetical protein XP_002348161 
LOC100287291          0.007   PREDICTED: hypothetical protein XP_002343834 
COL8A2                0.007   collagen, type VIII, alpha 2 
COL5A3                0.007   collagen, type V, alpha 3 preproprotein 
MYLK3                 0.007   myosin light chain kinase 3 
COL28A1               0.007   collagen, type XXVIII precursor 
VASN                  0.007   slit-like 2 
COL1A1                0.007   alpha 1 type I collagen preproprotein 
COL17A1               0.007   alpha 1 type XVII collagen 
COL23A1               0.007   collagen, type XXIII, alpha 1 
KIAA0195              0.007   hypothetical protein LOC9772 
WTIP                  0.007   Wilms tumor 1 interacting protein 
TTC31                 0.007   tetratricopeptide repeat domain 31 
LOC100133915          0.007   PREDICTED: hypothetical protein 
COL11A2               0.006   collagen, type XI, alpha 2 isoform 2 preproprotein ...
COL11A2               0.006   collagen, type XI, alpha 2 isoform 3 preproprotein ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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