BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|239753818 PREDICTED: hypothetical protein [Homo sapiens] (148 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|239753818 PREDICTED: hypothetical protein [Homo sapiens] 327 2e-90 gi|239748381 PREDICTED: hypothetical protein XP_002346646 [Homo ... 327 2e-90 gi|239742309 PREDICTED: hypothetical protein XP_002342482 [Homo ... 327 2e-90 gi|239755972 PREDICTED: similar to prostate collagen triple heli... 67 5e-12 gi|239750495 PREDICTED: similar to prostate collagen triple heli... 67 5e-12 gi|239744792 PREDICTED: hypothetical protein XP_002343272 [Homo ... 67 5e-12 gi|209447093 prostate collagen triple helix isoform 2 [Homo sapi... 67 5e-12 gi|62234340 prostate collagen triple helix isoform 1 [Homo sapiens] 67 5e-12 gi|16753207 ubiquilin 2 [Homo sapiens] 50 7e-07 gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 47 8e-06 gi|17402900 far upstream element-binding protein [Homo sapiens] 46 1e-05 gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Ho... 45 3e-05 gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Ho... 45 3e-05 gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Ho... 45 3e-05 gi|34365793 WNK lysine deficient protein kinase 4 [Homo sapiens] 44 6e-05 gi|162138911 IQ motif and Sec7 domain 2 isoform1 [Homo sapiens] 42 1e-04 gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens] 42 2e-04 gi|23592228 extraembryonic, spermatogenesis, homeobox 1-like [Ho... 42 2e-04 gi|56243590 WD repeat domain 33 isoform 1 [Homo sapiens] 42 2e-04 gi|239582763 ral guanine nucleotide dissociation stimulator-like... 41 3e-04 gi|169175458 PREDICTED: similar to hCG2040468 [Homo sapiens] 41 4e-04 gi|48762934 alpha 2 type I collagen [Homo sapiens] 40 5e-04 gi|4505939 DNA-directed RNA polymerase II A [Homo sapiens] 40 5e-04 gi|18105032 type X collagen alpha 1 precursor [Homo sapiens] 40 5e-04 gi|194248060 outer dense fiber of sperm tails 1 [Homo sapiens] 40 5e-04 gi|38570075 collagen, type XXV, alpha 1 isoform 1 [Homo sapiens] 40 5e-04 gi|38570073 collagen, type XXV, alpha 1 isoform 2 [Homo sapiens] 40 5e-04 gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 40 7e-04 gi|169207799 PREDICTED: hypothetical protein [Homo sapiens] 40 7e-04 gi|119829187 alpha 1 type XVII collagen [Homo sapiens] 40 0.001 >gi|239753818 PREDICTED: hypothetical protein [Homo sapiens] Length = 148 Score = 327 bits (838), Expect = 2e-90 Identities = 148/148 (100%), Positives = 148/148 (100%) Query: 1 MPTEKADLSTMLPHLQTPGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSP 60 MPTEKADLSTMLPHLQTPGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSP Sbjct: 1 MPTEKADLSTMLPHLQTPGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSP 60 Query: 61 FSPARPSGPVLPLKPSERFPFHLSLLSCRLYHLFLEGRCDHGAQGNHLLQGALEVQASQE 120 FSPARPSGPVLPLKPSERFPFHLSLLSCRLYHLFLEGRCDHGAQGNHLLQGALEVQASQE Sbjct: 61 FSPARPSGPVLPLKPSERFPFHLSLLSCRLYHLFLEGRCDHGAQGNHLLQGALEVQASQE 120 Query: 121 CCRYTWGSSSLLSTDYPGVVHWHKWQNL 148 CCRYTWGSSSLLSTDYPGVVHWHKWQNL Sbjct: 121 CCRYTWGSSSLLSTDYPGVVHWHKWQNL 148 >gi|239748381 PREDICTED: hypothetical protein XP_002346646 [Homo sapiens] Length = 148 Score = 327 bits (838), Expect = 2e-90 Identities = 148/148 (100%), Positives = 148/148 (100%) Query: 1 MPTEKADLSTMLPHLQTPGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSP 60 MPTEKADLSTMLPHLQTPGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSP Sbjct: 1 MPTEKADLSTMLPHLQTPGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSP 60 Query: 61 FSPARPSGPVLPLKPSERFPFHLSLLSCRLYHLFLEGRCDHGAQGNHLLQGALEVQASQE 120 FSPARPSGPVLPLKPSERFPFHLSLLSCRLYHLFLEGRCDHGAQGNHLLQGALEVQASQE Sbjct: 61 FSPARPSGPVLPLKPSERFPFHLSLLSCRLYHLFLEGRCDHGAQGNHLLQGALEVQASQE 120 Query: 121 CCRYTWGSSSLLSTDYPGVVHWHKWQNL 148 CCRYTWGSSSLLSTDYPGVVHWHKWQNL Sbjct: 121 CCRYTWGSSSLLSTDYPGVVHWHKWQNL 148 >gi|239742309 PREDICTED: hypothetical protein XP_002342482 [Homo sapiens] Length = 148 Score = 327 bits (838), Expect = 2e-90 Identities = 148/148 (100%), Positives = 148/148 (100%) Query: 1 MPTEKADLSTMLPHLQTPGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSP 60 MPTEKADLSTMLPHLQTPGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSP Sbjct: 1 MPTEKADLSTMLPHLQTPGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSP 60 Query: 61 FSPARPSGPVLPLKPSERFPFHLSLLSCRLYHLFLEGRCDHGAQGNHLLQGALEVQASQE 120 FSPARPSGPVLPLKPSERFPFHLSLLSCRLYHLFLEGRCDHGAQGNHLLQGALEVQASQE Sbjct: 61 FSPARPSGPVLPLKPSERFPFHLSLLSCRLYHLFLEGRCDHGAQGNHLLQGALEVQASQE 120 Query: 121 CCRYTWGSSSLLSTDYPGVVHWHKWQNL 148 CCRYTWGSSSLLSTDYPGVVHWHKWQNL Sbjct: 121 CCRYTWGSSSLLSTDYPGVVHWHKWQNL 148 >gi|239755972 PREDICTED: similar to prostate collagen triple helix [Homo sapiens] Length = 116 Score = 67.0 bits (162), Expect = 5e-12 Identities = 29/57 (50%), Positives = 31/57 (54%) Query: 16 QTPGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPVLP 72 +TPGSP P P SP GPG PIGP P P GP GP P+ P P P P P P Sbjct: 60 RTPGSPWGPVGPASPLGPGFPIGPMGPGKPVGPKGPMLPLGPSGPVGPTSPLFPFCP 116 Score = 65.1 bits (157), Expect = 2e-11 Identities = 37/80 (46%), Positives = 42/80 (52%), Gaps = 7/80 (8%) Query: 5 KADLSTMLPHLQTPGSPGSPCSPLSPFGPGGPIGPTSPFSPS---GPMGPFFPVSPWSPF 61 K +S + P +P SP P P +P P GP+GP SP P GPMGP PV P P Sbjct: 39 KTRVSPIFPF--SPRSPFQPLIPRTPGSPWGPVGPASPLGPGFPIGPMGPGKPVGPKGPM 96 Query: 62 SPARPSGPVLPLKPSERFPF 81 P PSGPV P P FPF Sbjct: 97 LPLGPSGPVGPTSP--LFPF 114 >gi|239750495 PREDICTED: similar to prostate collagen triple helix [Homo sapiens] Length = 116 Score = 67.0 bits (162), Expect = 5e-12 Identities = 29/57 (50%), Positives = 31/57 (54%) Query: 16 QTPGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPVLP 72 +TPGSP P P SP GPG PIGP P P GP GP P+ P P P P P P Sbjct: 60 RTPGSPWGPVGPASPLGPGFPIGPMGPGKPVGPKGPMLPLGPSGPVGPTSPLFPFCP 116 Score = 65.1 bits (157), Expect = 2e-11 Identities = 37/80 (46%), Positives = 42/80 (52%), Gaps = 7/80 (8%) Query: 5 KADLSTMLPHLQTPGSPGSPCSPLSPFGPGGPIGPTSPFSPS---GPMGPFFPVSPWSPF 61 K +S + P +P SP P P +P P GP+GP SP P GPMGP PV P P Sbjct: 39 KTRVSPIFPF--SPRSPFQPLIPRTPGSPWGPVGPASPLGPGFPIGPMGPGKPVGPKGPM 96 Query: 62 SPARPSGPVLPLKPSERFPF 81 P PSGPV P P FPF Sbjct: 97 LPLGPSGPVGPTSP--LFPF 114 >gi|239744792 PREDICTED: hypothetical protein XP_002343272 [Homo sapiens] Length = 116 Score = 67.0 bits (162), Expect = 5e-12 Identities = 29/57 (50%), Positives = 31/57 (54%) Query: 16 QTPGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPVLP 72 +TPGSP P P SP GPG PIGP P P GP GP P+ P P P P P P Sbjct: 60 RTPGSPWGPVGPASPLGPGFPIGPMGPGKPVGPKGPMLPLGPSGPVGPTSPLFPFCP 116 Score = 65.1 bits (157), Expect = 2e-11 Identities = 37/80 (46%), Positives = 42/80 (52%), Gaps = 7/80 (8%) Query: 5 KADLSTMLPHLQTPGSPGSPCSPLSPFGPGGPIGPTSPFSPS---GPMGPFFPVSPWSPF 61 K +S + P +P SP P P +P P GP+GP SP P GPMGP PV P P Sbjct: 39 KTRVSPIFPF--SPRSPFQPLIPRTPGSPWGPVGPASPLGPGFPIGPMGPGKPVGPKGPM 96 Query: 62 SPARPSGPVLPLKPSERFPF 81 P PSGPV P P FPF Sbjct: 97 LPLGPSGPVGPTSP--LFPF 114 >gi|209447093 prostate collagen triple helix isoform 2 [Homo sapiens] Length = 116 Score = 67.0 bits (162), Expect = 5e-12 Identities = 29/57 (50%), Positives = 31/57 (54%) Query: 16 QTPGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPVLP 72 +TPGSP P P SP GPG PIGP P P GP GP P+ P P P P P P Sbjct: 60 RTPGSPWGPVGPASPLGPGFPIGPMGPGKPVGPKGPMLPLGPSGPVGPTSPLFPFCP 116 Score = 65.1 bits (157), Expect = 2e-11 Identities = 37/80 (46%), Positives = 42/80 (52%), Gaps = 7/80 (8%) Query: 5 KADLSTMLPHLQTPGSPGSPCSPLSPFGPGGPIGPTSPFSPS---GPMGPFFPVSPWSPF 61 K +S + P +P SP P P +P P GP+GP SP P GPMGP PV P P Sbjct: 39 KTRVSPIFPF--SPRSPFQPLIPRTPGSPWGPVGPASPLGPGFPIGPMGPGKPVGPKGPM 96 Query: 62 SPARPSGPVLPLKPSERFPF 81 P PSGPV P P FPF Sbjct: 97 LPLGPSGPVGPTSP--LFPF 114 >gi|62234340 prostate collagen triple helix isoform 1 [Homo sapiens] Length = 107 Score = 67.0 bits (162), Expect = 5e-12 Identities = 29/57 (50%), Positives = 31/57 (54%) Query: 16 QTPGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPVLP 72 +TPGSP P P SP GPG PIGP P P GP GP P+ P P P P P P Sbjct: 51 RTPGSPWGPVGPASPLGPGFPIGPMGPGKPVGPKGPMLPLGPSGPVGPTSPLFPFCP 107 Score = 65.1 bits (157), Expect = 2e-11 Identities = 37/80 (46%), Positives = 42/80 (52%), Gaps = 7/80 (8%) Query: 5 KADLSTMLPHLQTPGSPGSPCSPLSPFGPGGPIGPTSPFSPS---GPMGPFFPVSPWSPF 61 K +S + P +P SP P P +P P GP+GP SP P GPMGP PV P P Sbjct: 30 KTRVSPIFPF--SPRSPFQPLIPRTPGSPWGPVGPASPLGPGFPIGPMGPGKPVGPKGPM 87 Query: 62 SPARPSGPVLPLKPSERFPF 81 P PSGPV P P FPF Sbjct: 88 LPLGPSGPVGPTSP--LFPF 105 >gi|16753207 ubiquilin 2 [Homo sapiens] Length = 624 Score = 50.1 bits (118), Expect = 7e-07 Identities = 23/54 (42%), Positives = 28/54 (51%) Query: 19 GSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPVLP 72 G G+ P+ P P GPIGP PF+P GP+GP P P +P GP P Sbjct: 483 GVLGTAIGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGP 536 Score = 49.3 bits (116), Expect = 1e-06 Identities = 25/60 (41%), Positives = 32/60 (53%), Gaps = 1/60 (1%) Query: 19 GSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGP-VLPLKPSE 77 G+ P P++P GP GPI P +P P GP+GP P +P P+GP V PSE Sbjct: 486 GTAIGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSE 545 Score = 49.3 bits (116), Expect = 1e-06 Identities = 25/64 (39%), Positives = 33/64 (51%), Gaps = 1/64 (1%) Query: 17 TPGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPW-SPFSPARPSGPVLPLKP 75 TP P P P +P GP GPIGPT P +P G G P P S +P+ + P P Sbjct: 496 TPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSETTSPTSESGP 555 Query: 76 SERF 79 +++F Sbjct: 556 NQQF 559 >gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] Length = 1464 Score = 46.6 bits (109), Expect = 8e-06 Identities = 23/52 (44%), Positives = 28/52 (53%), Gaps = 4/52 (7%) Query: 18 PGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGP 69 PG+PG+P +P GP GP G + +GP GP PV P PA P GP Sbjct: 1045 PGAPGAPGAP----GPVGPAGKSGDRGETGPAGPAGPVGPVGARGPAGPQGP 1092 Score = 43.9 bits (102), Expect = 5e-05 Identities = 21/51 (41%), Positives = 26/51 (50%), Gaps = 1/51 (1%) Query: 18 PGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSG 68 PG+PG+P P+ P G G G T P P+GP+GP P P P G Sbjct: 1048 PGAPGAP-GPVGPAGKSGDRGETGPAGPAGPVGPVGARGPAGPQGPRGDKG 1097 Score = 40.0 bits (92), Expect = 7e-04 Identities = 29/81 (35%), Positives = 29/81 (35%), Gaps = 19/81 (23%) Query: 18 PGSPGSPCS--PLSPFGPGGPIGPTS---------------PFSPSGPMGPFFPVSPWSP 60 PG PGSP P GP GP GP P P GP G P P Sbjct: 1120 PGPPGSPGEQGPSGASGPAGPRGPPGSAGAPGKDGLNGLPGPIGPPGPRGRTGDAGPVGP 1179 Query: 61 FSPARPSGPVLPLKPSERFPF 81 P P GP P PS F F Sbjct: 1180 PGPPGPPGP--PGPPSAGFDF 1198 Score = 37.0 bits (84), Expect = 0.006 Identities = 26/65 (40%), Positives = 32/65 (49%), Gaps = 10/65 (15%) Query: 18 PGSPGSPCSPLSP--------FGPGGPIG-PTSPFSPSGPMGPFFPVSPWSPFSPARPSG 68 PG+ GSP SP GP GP G P +P +P GP+GP PA P+G Sbjct: 1018 PGAEGSPGRDGSPGAKGDRGETGPAGPPGAPGAPGAP-GPVGPAGKSGDRGETGPAGPAG 1076 Query: 69 PVLPL 73 PV P+ Sbjct: 1077 PVGPV 1081 Score = 35.4 bits (80), Expect = 0.018 Identities = 24/60 (40%), Positives = 25/60 (41%), Gaps = 8/60 (13%) Query: 19 GSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPVLPLKPSER 78 G PG P P P G G GP P P GP GP P S FS LP P E+ Sbjct: 1157 GLPG-PIGPPGPRGRTGDAGPVGPPGPPGPPGPPGPPSAGFDFS-------FLPQPPQEK 1208 Score = 32.7 bits (73), Expect = 0.11 Identities = 19/54 (35%), Positives = 20/54 (37%), Gaps = 2/54 (3%) Query: 18 PGSPG--SPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGP 69 PG+ G P P GP GP GP GP G P P P GP Sbjct: 877 PGAAGRVGPPGPSGNAGPPGPPGPAGKEGGKGPRGETGPAGRPGEVGPPGPPGP 930 Score = 32.0 bits (71), Expect = 0.19 Identities = 18/51 (35%), Positives = 19/51 (37%) Query: 18 PGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSG 68 P P P P GP G G P +GP G V P P PA G Sbjct: 885 PPGPSGNAGPPGPPGPAGKEGGKGPRGETGPAGRPGEVGPPGPPGPAGEKG 935 Score = 31.6 bits (70), Expect = 0.25 Identities = 24/72 (33%), Positives = 26/72 (36%), Gaps = 17/72 (23%) Query: 18 PGS--PGSPCSPLSPFGPG-----------GPIGPTSPFSPSGPMGP----FFPVSPWSP 60 PG+ P C P+ P G GP G T P P GP GP P P P Sbjct: 82 PGAEVPEGECCPVCPDGSESPTDQETTGVEGPKGDTGPRGPRGPAGPPGRDGIPGQPGLP 141 Query: 61 FSPARPSGPVLP 72 P P P P Sbjct: 142 GPPGPPGPPGPP 153 Score = 31.6 bits (70), Expect = 0.25 Identities = 20/60 (33%), Positives = 21/60 (35%), Gaps = 5/60 (8%) Query: 18 PGSPGSP-----CSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPVLP 72 PG+ G P P P G GP GP P G GP P P GP P Sbjct: 871 PGATGFPGAAGRVGPPGPSGNAGPPGPPGPAGKEGGKGPRGETGPAGRPGEVGPPGPPGP 930 Score = 31.2 bits (69), Expect = 0.33 Identities = 16/38 (42%), Positives = 17/38 (44%), Gaps = 5/38 (13%) Query: 19 GSPGSP-----CSPLSPFGPGGPIGPTSPFSPSGPMGP 51 GSPG P+ P GP G G PSGP GP Sbjct: 755 GSPGKDGVRGLTGPIGPPGPAGAPGDKGESGPSGPAGP 792 Score = 30.8 bits (68), Expect = 0.43 Identities = 12/30 (40%), Positives = 13/30 (43%) Query: 21 PGSPCSPLSPFGPGGPIGPTSPFSPSGPMG 50 P P P+ P G GP GP P G G Sbjct: 1071 PAGPAGPVGPVGARGPAGPQGPRGDKGETG 1100 Score = 30.4 bits (67), Expect = 0.57 Identities = 14/33 (42%), Positives = 16/33 (48%), Gaps = 1/33 (3%) Query: 18 PGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMG 50 PG+ G P G GP GP P P GP+G Sbjct: 823 PGAKGEP-GDAGAKGDAGPPGPAGPAGPPGPIG 854 Score = 30.4 bits (67), Expect = 0.57 Identities = 22/74 (29%), Positives = 25/74 (33%), Gaps = 17/74 (22%) Query: 18 PGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMG----------------PFFPVSPWSPF 61 P P P P+ GP GP GP +G G P P SP Sbjct: 1071 PAGPAGPVGPVGARGPAGPQGPRGDKGETGEQGDRGIKGHRGFSGLQGPPGPPGSPGEQ- 1129 Query: 62 SPARPSGPVLPLKP 75 P+ SGP P P Sbjct: 1130 GPSGASGPAGPRGP 1143 Score = 30.0 bits (66), Expect = 0.74 Identities = 23/67 (34%), Positives = 25/67 (37%), Gaps = 16/67 (23%) Query: 30 PFGPGGPIGPTSPFSPSGPMG----PFFPVSPWS--PFSPARPSGPV----------LPL 73 P GP GP G P GP G P P P + P P P GP P Sbjct: 180 PMGPSGPRGLPGPPGAPGPQGFQGPPGEPGEPGASGPMGPRGPPGPPGKNGDDGEAGKPG 239 Query: 74 KPSERFP 80 +P ER P Sbjct: 240 RPGERGP 246 Score = 30.0 bits (66), Expect = 0.74 Identities = 23/59 (38%), Positives = 26/59 (44%), Gaps = 8/59 (13%) Query: 18 PGSPGS--PCSPLSPFGPGGPIG----PTSPFS--PSGPMGPFFPVSPWSPFSPARPSG 68 PG PG+ P P P GP GP G P +P S +G G PV P PA G Sbjct: 409 PGFPGARGPSGPQGPGGPPGPKGNSGEPGAPGSKGDTGAKGEPGPVGVQGPPGPAGEEG 467 Score = 30.0 bits (66), Expect = 0.74 Identities = 16/34 (47%), Positives = 17/34 (50%), Gaps = 1/34 (2%) Query: 18 PGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGP 51 PG+ G SP SP GP G GP P G GP Sbjct: 535 PGAKGLTGSPGSP-GPDGKTGPPGPAGQDGRPGP 567 Score = 30.0 bits (66), Expect = 0.74 Identities = 16/33 (48%), Positives = 16/33 (48%), Gaps = 4/33 (12%) Query: 19 GSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGP 51 GSPGSP P G GP GP GP GP Sbjct: 542 GSPGSP----GPDGKTGPPGPAGQDGRPGPPGP 570 Score = 30.0 bits (66), Expect = 0.74 Identities = 20/56 (35%), Positives = 20/56 (35%), Gaps = 2/56 (3%) Query: 15 LQTPGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVS--PWSPFSPARPSG 68 L P P P GP GP GP P P GP F S P P A G Sbjct: 1158 LPGPIGPPGPRGRTGDAGPVGPPGPPGPPGPPGPPSAGFDFSFLPQPPQEKAHDGG 1213 Score = 29.6 bits (65), Expect = 0.96 Identities = 18/52 (34%), Positives = 19/52 (36%), Gaps = 1/52 (1%) Query: 19 GSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPV 70 G PG P P GP G G G G P P PA P GP+ Sbjct: 803 GEPGPP-GPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGPAGPAGPPGPI 853 Score = 29.3 bits (64), Expect = 1.3 Identities = 28/85 (32%), Positives = 30/85 (35%), Gaps = 27/85 (31%) Query: 18 PGSPGSPCSPLSPFGPG------------------GPIGPTSPFSPSGPMG-PFFPVSP- 57 PG PG P P P PG G I P PSGP G P P +P Sbjct: 138 PGLPGPPGPPGPPGPPGLGGNFAPQLSYGYDEKSTGGISVPGPMGPSGPRGLPGPPGAPG 197 Query: 58 -----WSPFSPARP--SGPVLPLKP 75 P P P SGP+ P P Sbjct: 198 PQGFQGPPGEPGEPGASGPMGPRGP 222 Score = 29.3 bits (64), Expect = 1.3 Identities = 23/63 (36%), Positives = 24/63 (38%), Gaps = 10/63 (15%) Query: 19 GSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGP----FFP-----VSPWSPFSPARPSGP 69 G PG P P P GP G +G G GP FP V P P A P GP Sbjct: 839 GPPG-PAGPAGPPGPIGNVGAPGAKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGP 897 Query: 70 VLP 72 P Sbjct: 898 PGP 900 Score = 28.9 bits (63), Expect = 1.6 Identities = 18/54 (33%), Positives = 20/54 (37%), Gaps = 1/54 (1%) Query: 19 GSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPVLP 72 G PG P P P G G +G P GP G P P P+G P Sbjct: 332 GPPG-PTGPAGPPGFPGAVGAKGEAGPQGPRGSEGPQGVRGEPGPPGPAGAAGP 384 Score = 28.9 bits (63), Expect = 1.6 Identities = 19/56 (33%), Positives = 21/56 (37%), Gaps = 1/56 (1%) Query: 18 PGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPVLPL 73 PG G P P P G GP G G G P PA P+GP P+ Sbjct: 799 PGDRGEP-GPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGPAGPAGPPGPI 853 Score = 28.9 bits (63), Expect = 1.6 Identities = 18/51 (35%), Positives = 19/51 (37%), Gaps = 1/51 (1%) Query: 19 GSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGP 69 G PG P P G GP G T P G +GP P P GP Sbjct: 893 GPPGPP-GPAGKEGGKGPRGETGPAGRPGEVGPPGPPGPAGEKGSPGADGP 942 Score = 28.5 bits (62), Expect = 2.1 Identities = 18/50 (36%), Positives = 20/50 (40%), Gaps = 7/50 (14%) Query: 19 GSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSG 68 G+ GSP G G G T P P GP G P PA P+G Sbjct: 752 GADGSP-------GKDGVRGLTGPIGPPGPAGAPGDKGESGPSGPAGPTG 794 Score = 28.5 bits (62), Expect = 2.1 Identities = 19/51 (37%), Positives = 20/51 (39%), Gaps = 1/51 (1%) Query: 18 PGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSG 68 PG G P P GP G G P SG GP P+ P P SG Sbjct: 964 PGQRGERGFPGLP-GPSGEPGKQGPSGASGERGPPGPMGPPGLAGPPGESG 1013 Score = 28.1 bits (61), Expect = 2.8 Identities = 18/54 (33%), Positives = 22/54 (40%), Gaps = 2/54 (3%) Query: 18 PGSPGSPCSP--LSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGP 69 PGSPG +P + P G G G P+G G P P P+GP Sbjct: 289 PGSPGENGAPGQMGPRGLPGERGRPGAPGPAGARGNDGATGAAGPPGPTGPAGP 342 Score = 27.7 bits (60), Expect = 3.7 Identities = 18/54 (33%), Positives = 21/54 (38%), Gaps = 2/54 (3%) Query: 18 PGSPGSPCSPLSP--FGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGP 69 PG+PG + + G GP GPT P P G G P P GP Sbjct: 313 PGAPGPAGARGNDGATGAAGPPGPTGPAGPPGFPGAVGAKGEAGPQGPRGSEGP 366 Score = 27.7 bits (60), Expect = 3.7 Identities = 20/55 (36%), Positives = 22/55 (40%), Gaps = 9/55 (16%) Query: 18 PGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPVLP 72 PGS G P + GP GP G P+GP G SP RP LP Sbjct: 490 PGSRGFPGAD-GVAGPKGPAGERGSPGPAGPKG--------SPGEAGRPGEAGLP 535 Score = 27.3 bits (59), Expect = 4.8 Identities = 16/51 (31%), Positives = 19/51 (37%), Gaps = 4/51 (7%) Query: 18 PGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSG 68 PG G P GP G +GP +G GP P P P+G Sbjct: 592 PGKAGERGVP----GPPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAG 638 Score = 26.6 bits (57), Expect = 8.2 Identities = 18/49 (36%), Positives = 19/49 (38%), Gaps = 6/49 (12%) Query: 21 PGSPCSPLSPFGPGGPIG----PTSPF--SPSGPMGPFFPVSPWSPFSP 63 P P P GP GP G P P P GP GP P F+P Sbjct: 113 PKGDTGPRGPRGPAGPPGRDGIPGQPGLPGPPGPPGPPGPPGLGGNFAP 161 Score = 26.6 bits (57), Expect = 8.2 Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 2/42 (4%) Query: 18 PGSPGSPCSPLSPFGPGGPIGPTSPFS--PSGPMGPFFPVSP 57 PG+ G P + + PG P P + PSGP GP P P Sbjct: 388 PGADGQPGAKGANGAPGIAGAPGFPGARGPSGPQGPGGPPGP 429 Score = 26.6 bits (57), Expect = 8.2 Identities = 20/64 (31%), Positives = 25/64 (39%), Gaps = 7/64 (10%) Query: 17 TPGSPG-----SPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPVL 71 +PGSPG P P G GP GP +G MG FP + P + + Sbjct: 543 SPGSPGPDGKTGPPGPAGQDGRPGPPGPPGARGQAGVMG--FPGPKGAAGEPGKAGERGV 600 Query: 72 PLKP 75 P P Sbjct: 601 PGPP 604 Score = 26.6 bits (57), Expect = 8.2 Identities = 17/54 (31%), Positives = 17/54 (31%) Query: 15 LQTPGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSG 68 L P P P G GP GP P G G P P A P G Sbjct: 765 LTGPIGPPGPAGAPGDKGESGPSGPAGPTGARGAPGDRGEPGPPGPAGFAGPPG 818 >gi|17402900 far upstream element-binding protein [Homo sapiens] Length = 644 Score = 46.2 bits (108), Expect = 1e-05 Identities = 26/61 (42%), Positives = 31/61 (50%), Gaps = 5/61 (8%) Query: 19 GSPGSPCSPLSPFGPGG---PIGPTSPFSPSGPMGPFFPVSPWSPFSPA-RPSGPVLPLK 74 G P +P P P GP G P GP P P PMGP+ P +P++P P P GP P Sbjct: 448 GGPVNPLGPPVPHGPHGVPGPHGPPGPPGPGTPMGPYNP-APYNPGPPGPAPHGPPAPYA 506 Query: 75 P 75 P Sbjct: 507 P 507 Score = 33.1 bits (74), Expect = 0.087 Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 6/49 (12%) Query: 34 GGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPVLPLKPSERFPFH 82 GGP+ P P P GP G P P P P GP P+ P P++ Sbjct: 448 GGPVNPLGPPVPHGPHG--VP----GPHGPPGPPGPGTPMGPYNPAPYN 490 Score = 32.7 bits (73), Expect = 0.11 Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 8/54 (14%) Query: 18 PGSPGSPCSPLSPFGPG----GPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPS 67 PG+P P +P +P+ PG P GP +P++P G G +P W +P P+ Sbjct: 477 PGTPMGPYNP-APYNPGPPGPAPHGPPAPYAPQG-WGNAYP--HWQQQAPPDPA 526 Score = 31.6 bits (70), Expect = 0.25 Identities = 15/43 (34%), Positives = 18/43 (41%) Query: 38 GPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPVLPLKPSERFP 80 GP +P P P GP P P P P P+ P P+ P Sbjct: 449 GPVNPLGPPVPHGPHGVPGPHGPPGPPGPGTPMGPYNPAPYNP 491 >gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Homo sapiens] Length = 1751 Score = 44.7 bits (104), Expect = 3e-05 Identities = 27/63 (42%), Positives = 30/63 (47%), Gaps = 4/63 (6%) Query: 18 PGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPVLPLKPSE 77 PG PG PC P+SP GP GP T P P GP GP P +P P P KP + Sbjct: 778 PGPPGLPC-PVSPLGPAGPALQTVP-GPQGPPGP--PGRDGTPGRDGEPGDPGEDGKPGD 833 Query: 78 RFP 80 P Sbjct: 834 TGP 836 Score = 37.7 bits (86), Expect = 0.004 Identities = 22/50 (44%), Positives = 22/50 (44%), Gaps = 8/50 (16%) Query: 19 GSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSG 68 G PGSPC P GP G P SP GP GP P P P P G Sbjct: 770 GPPGSPCLP-------GPPGLPCPVSPLGPAGPALQTVP-GPQGPPGPPG 811 Score = 36.2 bits (82), Expect = 0.010 Identities = 23/72 (31%), Positives = 29/72 (40%) Query: 19 GSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPVLPLKPSER 78 G PG P P P PG P+ ++ F+ S GP P P G V P P + Sbjct: 1252 GMPGPPGPPGPPGPPGTPVYDSNVFAESSRPGPPGLPGNQGPPGPKGAKGEVGPPGPPGQ 1311 Query: 79 FPFHLSLLSCRL 90 FPF L + Sbjct: 1312 FPFDFLQLEAEM 1323 Score = 32.3 bits (72), Expect = 0.15 Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 1/50 (2%) Query: 19 GSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSG 68 G+PG S +P GP G G + GP GP P P P P P+G Sbjct: 977 GAPGHKGSKGAP-GPAGARGESGLAGAPGPAGPPGPPGPPGPPGPGLPAG 1025 Score = 31.6 bits (70), Expect = 0.25 Identities = 26/59 (44%), Positives = 26/59 (44%), Gaps = 12/59 (20%) Query: 19 GSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPA-----RPSGPVLP 72 G PG P P G GP P SP P GP G PVSP P PA P GP P Sbjct: 758 GEPGVPGPP----GRAGP--PGSPCLP-GPPGLPCPVSPLGPAGPALQTVPGPQGPPGP 809 Score = 31.6 bits (70), Expect = 0.25 Identities = 20/49 (40%), Positives = 21/49 (42%), Gaps = 8/49 (16%) Query: 18 PGSPGSPCSPLSPFGPG-------GPIGPTSPFSPSGPMGPFFPVSPWS 59 PG PG P P P GP GP GP P P G MG V W+ Sbjct: 1399 PGPPGPPGPPSFP-GPHRQTISVPGPPGPPGPPGPPGTMGASSGVRLWA 1446 Score = 29.6 bits (65), Expect = 0.96 Identities = 21/55 (38%), Positives = 24/55 (43%), Gaps = 3/55 (5%) Query: 19 GSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFS-PARPSGPVLP 72 G G P FG G GP P P GP G PV + F+ +RP P LP Sbjct: 1236 GEKGEPGDASLGFGMRGMPGPPGPPGPPGPPGT--PVYDSNVFAESSRPGPPGLP 1288 Score = 29.3 bits (64), Expect = 1.3 Identities = 16/37 (43%), Positives = 17/37 (45%), Gaps = 1/37 (2%) Query: 18 PGSPGSPCSPLSPFGPG-GPIGPTSPFSPSGPMGPFF 53 PG+PG PG G GP P P GP GP F Sbjct: 840 PGTPGDVGPKGDKGDPGVGERGPPGPQGPPGPPGPSF 876 Score = 29.3 bits (64), Expect = 1.3 Identities = 20/54 (37%), Positives = 21/54 (38%), Gaps = 1/54 (1%) Query: 19 GSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPVLP 72 GS G +P G P GP SG G P P P P P GP LP Sbjct: 971 GSLGEAGAPGHKGSKGAP-GPAGARGESGLAGAPGPAGPPGPPGPPGPPGPGLP 1023 Score = 28.5 bits (62), Expect = 2.1 Identities = 22/62 (35%), Positives = 22/62 (35%), Gaps = 12/62 (19%) Query: 18 PGSPGSPCSPLSPFGPG----------GPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPS 67 PG PG P P P PG GP G GP P FP P P P R Sbjct: 905 PGPPGPPGVPGLPGEPGRFGVNSSDVPGPAGLPGVPGREGP--PGFPGLPGPPGPPGREG 962 Query: 68 GP 69 P Sbjct: 963 PP 964 Score = 27.7 bits (60), Expect = 3.7 Identities = 23/59 (38%), Positives = 23/59 (38%), Gaps = 5/59 (8%) Query: 19 GSPGSPCSPLSPFGPG--GPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPVLPLKP 75 G PG P P P G G G GP P P P P FP S P GP P P Sbjct: 1377 GQPGPP-GPQGPPGIGYEGRQGPPGP--PGPPGPPSFPGPHRQTISVPGPPGPPGPPGP 1432 Score = 27.3 bits (59), Expect = 4.8 Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 1/29 (3%) Query: 13 PHLQTPGSPGSPCSPLSPFGPGGPIGPTS 41 PH QT PG P P P GP G +G +S Sbjct: 1413 PHRQTISVPGPP-GPPGPPGPPGTMGASS 1440 Score = 26.9 bits (58), Expect = 6.2 Identities = 21/53 (39%), Positives = 21/53 (39%), Gaps = 7/53 (13%) Query: 18 PGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPA-RPSGP 69 PG P P P P GP GP P G GPF WS A P GP Sbjct: 1003 PG-PAGPPGPPGPPGPPGPGLPAGFDDMEGSGGPF-----WSTARSADGPQGP 1049 Score = 26.6 bits (57), Expect = 8.2 Identities = 20/55 (36%), Positives = 21/55 (38%), Gaps = 6/55 (10%) Query: 18 PGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPVLP 72 P PG P G GGP T+ S GP GP P P P P LP Sbjct: 1017 PPGPGLPAGFDDMEGSGGPFWSTAR-SADGPQGP-----PGLPGLKGDPGVPGLP 1065 Score = 26.6 bits (57), Expect = 8.2 Identities = 20/54 (37%), Positives = 20/54 (37%), Gaps = 14/54 (25%) Query: 18 PGSPGSPCSP-------LSPFGPGGPIGPTS-------PFSPSGPMGPFFPVSP 57 PG PG P P GP GP GP S S GP GP P P Sbjct: 1379 PGPPGPQGPPGIGYEGRQGPPGPPGPPGPPSFPGPHRQTISVPGPPGPPGPPGP 1432 >gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Homo sapiens] Length = 1336 Score = 44.7 bits (104), Expect = 3e-05 Identities = 27/63 (42%), Positives = 30/63 (47%), Gaps = 4/63 (6%) Query: 18 PGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPVLPLKPSE 77 PG PG PC P+SP GP GP T P P GP GP P +P P P KP + Sbjct: 363 PGPPGLPC-PVSPLGPAGPALQTVP-GPQGPPGP--PGRDGTPGRDGEPGDPGEDGKPGD 418 Query: 78 RFP 80 P Sbjct: 419 TGP 421 Score = 37.7 bits (86), Expect = 0.004 Identities = 22/50 (44%), Positives = 22/50 (44%), Gaps = 8/50 (16%) Query: 19 GSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSG 68 G PGSPC P GP G P SP GP GP P P P P G Sbjct: 355 GPPGSPCLP-------GPPGLPCPVSPLGPAGPALQTVP-GPQGPPGPPG 396 Score = 36.2 bits (82), Expect = 0.010 Identities = 23/72 (31%), Positives = 29/72 (40%) Query: 19 GSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPVLPLKPSER 78 G PG P P P PG P+ ++ F+ S GP P P G V P P + Sbjct: 837 GMPGPPGPPGPPGPPGTPVYDSNVFAESSRPGPPGLPGNQGPPGPKGAKGEVGPPGPPGQ 896 Query: 79 FPFHLSLLSCRL 90 FPF L + Sbjct: 897 FPFDFLQLEAEM 908 Score = 32.3 bits (72), Expect = 0.15 Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 1/50 (2%) Query: 19 GSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSG 68 G+PG S +P GP G G + GP GP P P P P P+G Sbjct: 562 GAPGHKGSKGAP-GPAGARGESGLAGAPGPAGPPGPPGPPGPPGPGLPAG 610 Score = 31.6 bits (70), Expect = 0.25 Identities = 26/59 (44%), Positives = 26/59 (44%), Gaps = 12/59 (20%) Query: 19 GSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPA-----RPSGPVLP 72 G PG P P G GP P SP P GP G PVSP P PA P GP P Sbjct: 343 GEPGVPGPP----GRAGP--PGSPCLP-GPPGLPCPVSPLGPAGPALQTVPGPQGPPGP 394 Score = 31.6 bits (70), Expect = 0.25 Identities = 20/49 (40%), Positives = 21/49 (42%), Gaps = 8/49 (16%) Query: 18 PGSPGSPCSPLSPFGPG-------GPIGPTSPFSPSGPMGPFFPVSPWS 59 PG PG P P P GP GP GP P P G MG V W+ Sbjct: 984 PGPPGPPGPPSFP-GPHRQTISVPGPPGPPGPPGPPGTMGASSGVRLWA 1031 Score = 29.6 bits (65), Expect = 0.96 Identities = 21/55 (38%), Positives = 24/55 (43%), Gaps = 3/55 (5%) Query: 19 GSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFS-PARPSGPVLP 72 G G P FG G GP P P GP G PV + F+ +RP P LP Sbjct: 821 GEKGEPGDASLGFGMRGMPGPPGPPGPPGPPGT--PVYDSNVFAESSRPGPPGLP 873 Score = 29.3 bits (64), Expect = 1.3 Identities = 16/37 (43%), Positives = 17/37 (45%), Gaps = 1/37 (2%) Query: 18 PGSPGSPCSPLSPFGPG-GPIGPTSPFSPSGPMGPFF 53 PG+PG PG G GP P P GP GP F Sbjct: 425 PGTPGDVGPKGDKGDPGVGERGPPGPQGPPGPPGPSF 461 Score = 29.3 bits (64), Expect = 1.3 Identities = 20/54 (37%), Positives = 21/54 (38%), Gaps = 1/54 (1%) Query: 19 GSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPVLP 72 GS G +P G P GP SG G P P P P P GP LP Sbjct: 556 GSLGEAGAPGHKGSKGAP-GPAGARGESGLAGAPGPAGPPGPPGPPGPPGPGLP 608 Score = 28.5 bits (62), Expect = 2.1 Identities = 22/62 (35%), Positives = 22/62 (35%), Gaps = 12/62 (19%) Query: 18 PGSPGSPCSPLSPFGPG----------GPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPS 67 PG PG P P P PG GP G GP P FP P P P R Sbjct: 490 PGPPGPPGVPGLPGEPGRFGVNSSDVPGPAGLPGVPGREGP--PGFPGLPGPPGPPGREG 547 Query: 68 GP 69 P Sbjct: 548 PP 549 Score = 27.7 bits (60), Expect = 3.7 Identities = 23/59 (38%), Positives = 23/59 (38%), Gaps = 5/59 (8%) Query: 19 GSPGSPCSPLSPFGPG--GPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPVLPLKP 75 G PG P P P G G G GP P P P P FP S P GP P P Sbjct: 962 GQPGPP-GPQGPPGIGYEGRQGPPGP--PGPPGPPSFPGPHRQTISVPGPPGPPGPPGP 1017 Score = 27.3 bits (59), Expect = 4.8 Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 1/29 (3%) Query: 13 PHLQTPGSPGSPCSPLSPFGPGGPIGPTS 41 PH QT PG P P P GP G +G +S Sbjct: 998 PHRQTISVPGPP-GPPGPPGPPGTMGASS 1025 Score = 26.9 bits (58), Expect = 6.2 Identities = 21/53 (39%), Positives = 21/53 (39%), Gaps = 7/53 (13%) Query: 18 PGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPA-RPSGP 69 PG P P P P GP GP P G GPF WS A P GP Sbjct: 588 PG-PAGPPGPPGPPGPPGPGLPAGFDDMEGSGGPF-----WSTARSADGPQGP 634 Score = 26.6 bits (57), Expect = 8.2 Identities = 20/55 (36%), Positives = 21/55 (38%), Gaps = 6/55 (10%) Query: 18 PGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPVLP 72 P PG P G GGP T+ S GP GP P P P P LP Sbjct: 602 PPGPGLPAGFDDMEGSGGPFWSTAR-SADGPQGP-----PGLPGLKGDPGVPGLP 650 Score = 26.6 bits (57), Expect = 8.2 Identities = 20/54 (37%), Positives = 20/54 (37%), Gaps = 14/54 (25%) Query: 18 PGSPGSPCSP-------LSPFGPGGPIGPTS-------PFSPSGPMGPFFPVSP 57 PG PG P P GP GP GP S S GP GP P P Sbjct: 964 PGPPGPQGPPGIGYEGRQGPPGPPGPPGPPSFPGPHRQTISVPGPPGPPGPPGP 1017 >gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Homo sapiens] Length = 1516 Score = 44.7 bits (104), Expect = 3e-05 Identities = 27/63 (42%), Positives = 30/63 (47%), Gaps = 4/63 (6%) Query: 18 PGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPVLPLKPSE 77 PG PG PC P+SP GP GP T P P GP GP P +P P P KP + Sbjct: 543 PGPPGLPC-PVSPLGPAGPALQTVP-GPQGPPGP--PGRDGTPGRDGEPGDPGEDGKPGD 598 Query: 78 RFP 80 P Sbjct: 599 TGP 601 Score = 37.7 bits (86), Expect = 0.004 Identities = 22/50 (44%), Positives = 22/50 (44%), Gaps = 8/50 (16%) Query: 19 GSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSG 68 G PGSPC P GP G P SP GP GP P P P P G Sbjct: 535 GPPGSPCLP-------GPPGLPCPVSPLGPAGPALQTVP-GPQGPPGPPG 576 Score = 36.2 bits (82), Expect = 0.010 Identities = 23/72 (31%), Positives = 29/72 (40%) Query: 19 GSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPVLPLKPSER 78 G PG P P P PG P+ ++ F+ S GP P P G V P P + Sbjct: 1017 GMPGPPGPPGPPGPPGTPVYDSNVFAESSRPGPPGLPGNQGPPGPKGAKGEVGPPGPPGQ 1076 Query: 79 FPFHLSLLSCRL 90 FPF L + Sbjct: 1077 FPFDFLQLEAEM 1088 Score = 32.3 bits (72), Expect = 0.15 Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 1/50 (2%) Query: 19 GSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSG 68 G+PG S +P GP G G + GP GP P P P P P+G Sbjct: 742 GAPGHKGSKGAP-GPAGARGESGLAGAPGPAGPPGPPGPPGPPGPGLPAG 790 Score = 31.6 bits (70), Expect = 0.25 Identities = 26/59 (44%), Positives = 26/59 (44%), Gaps = 12/59 (20%) Query: 19 GSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPA-----RPSGPVLP 72 G PG P P G GP P SP P GP G PVSP P PA P GP P Sbjct: 523 GEPGVPGPP----GRAGP--PGSPCLP-GPPGLPCPVSPLGPAGPALQTVPGPQGPPGP 574 Score = 31.6 bits (70), Expect = 0.25 Identities = 20/49 (40%), Positives = 21/49 (42%), Gaps = 8/49 (16%) Query: 18 PGSPGSPCSPLSPFGPG-------GPIGPTSPFSPSGPMGPFFPVSPWS 59 PG PG P P P GP GP GP P P G MG V W+ Sbjct: 1164 PGPPGPPGPPSFP-GPHRQTISVPGPPGPPGPPGPPGTMGASSGVRLWA 1211 Score = 29.6 bits (65), Expect = 0.96 Identities = 21/55 (38%), Positives = 24/55 (43%), Gaps = 3/55 (5%) Query: 19 GSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFS-PARPSGPVLP 72 G G P FG G GP P P GP G PV + F+ +RP P LP Sbjct: 1001 GEKGEPGDASLGFGMRGMPGPPGPPGPPGPPGT--PVYDSNVFAESSRPGPPGLP 1053 Score = 29.3 bits (64), Expect = 1.3 Identities = 16/37 (43%), Positives = 17/37 (45%), Gaps = 1/37 (2%) Query: 18 PGSPGSPCSPLSPFGPG-GPIGPTSPFSPSGPMGPFF 53 PG+PG PG G GP P P GP GP F Sbjct: 605 PGTPGDVGPKGDKGDPGVGERGPPGPQGPPGPPGPSF 641 Score = 29.3 bits (64), Expect = 1.3 Identities = 20/54 (37%), Positives = 21/54 (38%), Gaps = 1/54 (1%) Query: 19 GSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPVLP 72 GS G +P G P GP SG G P P P P P GP LP Sbjct: 736 GSLGEAGAPGHKGSKGAP-GPAGARGESGLAGAPGPAGPPGPPGPPGPPGPGLP 788 Score = 28.5 bits (62), Expect = 2.1 Identities = 22/62 (35%), Positives = 22/62 (35%), Gaps = 12/62 (19%) Query: 18 PGSPGSPCSPLSPFGPG----------GPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPS 67 PG PG P P P PG GP G GP P FP P P P R Sbjct: 670 PGPPGPPGVPGLPGEPGRFGVNSSDVPGPAGLPGVPGREGP--PGFPGLPGPPGPPGREG 727 Query: 68 GP 69 P Sbjct: 728 PP 729 Score = 27.7 bits (60), Expect = 3.7 Identities = 23/59 (38%), Positives = 23/59 (38%), Gaps = 5/59 (8%) Query: 19 GSPGSPCSPLSPFGPG--GPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPVLPLKP 75 G PG P P P G G G GP P P P P FP S P GP P P Sbjct: 1142 GQPGPP-GPQGPPGIGYEGRQGPPGP--PGPPGPPSFPGPHRQTISVPGPPGPPGPPGP 1197 Score = 27.3 bits (59), Expect = 4.8 Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 1/29 (3%) Query: 13 PHLQTPGSPGSPCSPLSPFGPGGPIGPTS 41 PH QT PG P P P GP G +G +S Sbjct: 1178 PHRQTISVPGPP-GPPGPPGPPGTMGASS 1205 Score = 26.9 bits (58), Expect = 6.2 Identities = 21/53 (39%), Positives = 21/53 (39%), Gaps = 7/53 (13%) Query: 18 PGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPA-RPSGP 69 PG P P P P GP GP P G GPF WS A P GP Sbjct: 768 PG-PAGPPGPPGPPGPPGPGLPAGFDDMEGSGGPF-----WSTARSADGPQGP 814 Score = 26.6 bits (57), Expect = 8.2 Identities = 20/55 (36%), Positives = 21/55 (38%), Gaps = 6/55 (10%) Query: 18 PGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPVLP 72 P PG P G GGP T+ S GP GP P P P P LP Sbjct: 782 PPGPGLPAGFDDMEGSGGPFWSTAR-SADGPQGP-----PGLPGLKGDPGVPGLP 830 Score = 26.6 bits (57), Expect = 8.2 Identities = 20/54 (37%), Positives = 20/54 (37%), Gaps = 14/54 (25%) Query: 18 PGSPGSPCSP-------LSPFGPGGPIGPTS-------PFSPSGPMGPFFPVSP 57 PG PG P P GP GP GP S S GP GP P P Sbjct: 1144 PGPPGPQGPPGIGYEGRQGPPGPPGPPGPPSFPGPHRQTISVPGPPGPPGPPGP 1197 >gi|34365793 WNK lysine deficient protein kinase 4 [Homo sapiens] Length = 1243 Score = 43.5 bits (101), Expect = 6e-05 Identities = 34/88 (38%), Positives = 40/88 (45%), Gaps = 10/88 (11%) Query: 4 EKADLSTMLPHLQ------TPGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFP-VS 56 E+ ST L H + SPG+P SP +PF PG PI P F + P P P S Sbjct: 784 EELQSSTSLEHRSWTAFSTSSSSPGTPLSPGNPFSPGTPISPGPIFPITSP--PCHPSPS 841 Query: 57 PWSPFSPARPSGPVLPLKPSERFPFHLS 84 P+SP S S P P S PF S Sbjct: 842 PFSPISSQVSSNP-SPHPTSSPLPFSSS 868 >gi|162138911 IQ motif and Sec7 domain 2 isoform1 [Homo sapiens] Length = 1488 Score = 42.4 bits (98), Expect = 1e-04 Identities = 27/69 (39%), Positives = 31/69 (44%), Gaps = 3/69 (4%) Query: 11 MLPHLQTPGSPGS--PCSPLS-PFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPS 67 M+P G PGS P S P P P+ P SP P P P SP +P SP P+ Sbjct: 1396 MMPAAGAAGGPGSRPPGGSYSHPHHPQSPLSPHSPIPPHPSYPPLPPPSPHTPHSPLPPT 1455 Query: 68 GPVLPLKPS 76 P PL S Sbjct: 1456 SPHGPLHAS 1464 Score = 40.8 bits (94), Expect = 4e-04 Identities = 22/55 (40%), Positives = 23/55 (41%) Query: 18 PGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPVLP 72 P P SP SP SP P P P SP P P P SP P + P G P Sbjct: 1418 PHHPQSPLSPHSPIPPHPSYPPLPPPSPHTPHSPLPPTSPHGPLHASGPPGTANP 1472 Score = 39.3 bits (90), Expect = 0.001 Identities = 23/63 (36%), Positives = 27/63 (42%) Query: 14 HLQTPGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPVLPL 73 H Q+P SP SP P + P P P +P SP P P P+ P A P Sbjct: 1420 HPQSPLSPHSPIPPHPSYPPLPPPSPHTPHSPLPPTSPHGPLHASGPPGTANPPSANPKA 1479 Query: 74 KPS 76 KPS Sbjct: 1480 KPS 1482 Score = 28.1 bits (61), Expect = 2.8 Identities = 15/39 (38%), Positives = 17/39 (43%) Query: 13 PHLQTPGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGP 51 P TP SP P SP P GP G +P S + P Sbjct: 1443 PSPHTPHSPLPPTSPHGPLHASGPPGTANPPSANPKAKP 1481 >gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens] Length = 1499 Score = 42.0 bits (97), Expect = 2e-04 Identities = 21/51 (41%), Positives = 24/51 (47%), Gaps = 1/51 (1%) Query: 19 GSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGP 69 GS G P P P GP GP+GP+ GP+GP P A P GP Sbjct: 1164 GSAGIP-GPFGPRGPPGPVGPSGKEGNPGPLGPIGPPGVRGSVGEAGPEGP 1213 Score = 35.8 bits (81), Expect = 0.013 Identities = 25/67 (37%), Positives = 26/67 (38%), Gaps = 5/67 (7%) Query: 18 PGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPVLPLKPSE 77 PG P P P P GP G G P P GP G V P P GP P P Sbjct: 1169 PG-PFGPRGPPGPVGPSGKEGNPGPLGPIGPPGVRGSVGEAGPEGPPGEPGPPGPPGP-- 1225 Query: 78 RFPFHLS 84 P HL+ Sbjct: 1226 --PGHLT 1230 Score = 35.4 bits (80), Expect = 0.018 Identities = 19/51 (37%), Positives = 20/51 (39%), Gaps = 4/51 (7%) Query: 19 GSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGP 69 G PG P P G G +GPT GP GP P P P GP Sbjct: 1005 GMPGLP----GPAGTPGKVGPTGATGDKGPPGPVGPPGSNGPVGEPGPEGP 1051 Score = 35.0 bits (79), Expect = 0.023 Identities = 23/60 (38%), Positives = 25/60 (41%), Gaps = 6/60 (10%) Query: 18 PGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPVLPLKPSE 77 PGS G P+ P GP G G P+GP G P P P GP P KP E Sbjct: 212 PGSVG----PVGPRGPQGLQGQQGGAGPTGPPGEPGDPGPMGPIGSRGPEGP--PGKPGE 265 Score = 34.3 bits (77), Expect = 0.039 Identities = 20/51 (39%), Positives = 20/51 (39%), Gaps = 4/51 (7%) Query: 19 GSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGP 69 G PG P P G G G PF P GP GP P P P GP Sbjct: 1152 GLPGPP----GPNGEQGSAGIPGPFGPRGPPGPVGPSGKEGNPGPLGPIGP 1198 Score = 33.1 bits (74), Expect = 0.087 Identities = 20/53 (37%), Positives = 20/53 (37%), Gaps = 1/53 (1%) Query: 18 PGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPV 70 PG PG P G GP GP P P GP G P P P G V Sbjct: 1154 PGPPG-PNGEQGSAGIPGPFGPRGPPGPVGPSGKEGNPGPLGPIGPPGVRGSV 1205 Score = 32.7 bits (73), Expect = 0.11 Identities = 20/51 (39%), Positives = 21/51 (41%), Gaps = 1/51 (1%) Query: 18 PGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSG 68 PG PG +P GP G G P P GP G PV P PA G Sbjct: 1007 PGLPGPAGTP-GKVGPTGATGDKGPPGPVGPPGSNGPVGEPGPEGPAGNDG 1056 Score = 31.2 bits (69), Expect = 0.33 Identities = 21/58 (36%), Positives = 22/58 (37%), Gaps = 11/58 (18%) Query: 19 GSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMG-------PFFPVSPWSPFSPARPSGP 69 G PG P P G GP G P GP G P P P +P P PS P Sbjct: 129 GRPG----PAGPPGSQGPRGERGPKGRPGPRGPQGIDGEPGVPGQPGAPGPPGHPSHP 182 Score = 31.2 bits (69), Expect = 0.33 Identities = 19/65 (29%), Positives = 24/65 (36%) Query: 4 EKADLSTMLPHLQTPGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSP 63 EK+ L + + + P P P G G GPT P G GP P+ P P Sbjct: 200 EKSGLGSQVGLMPGSVGPVGPRGPQGLQGQQGGAGPTGPPGEPGDPGPMGPIGSRGPEGP 259 Query: 64 ARPSG 68 G Sbjct: 260 PGKPG 264 Score = 31.2 bits (69), Expect = 0.33 Identities = 22/55 (40%), Positives = 23/55 (41%), Gaps = 9/55 (16%) Query: 18 PGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPVLP 72 PG+ G P S P GP G G P SGP G S P RP P LP Sbjct: 524 PGNRGFPGSDGLP-GPKGAQGERGPVGSSGPKG--------SQGDPGRPGEPGLP 569 Score = 31.2 bits (69), Expect = 0.33 Identities = 20/55 (36%), Positives = 21/55 (38%), Gaps = 1/55 (1%) Query: 18 PGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPVLP 72 PG G P P GP G G P +G GP PV P P GP P Sbjct: 998 PGQRGERGMPGLP-GPAGTPGKVGPTGATGDKGPPGPVGPPGSNGPVGEPGPEGP 1051 Score = 31.2 bits (69), Expect = 0.33 Identities = 17/44 (38%), Positives = 19/44 (43%) Query: 32 GPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPVLPLKP 75 G GP GP +G GPF P P P P+ G PL P Sbjct: 1152 GLPGPPGPNGEQGSAGIPGPFGPRGPPGPVGPSGKEGNPGPLGP 1195 Score = 31.2 bits (69), Expect = 0.33 Identities = 16/44 (36%), Positives = 18/44 (40%) Query: 32 GPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPVLPLKP 75 GP GP G GP GP P P P GP+ P+ P Sbjct: 1155 GPPGPNGEQGSAGIPGPFGPRGPPGPVGPSGKEGNPGPLGPIGP 1198 Score = 30.4 bits (67), Expect = 0.57 Identities = 21/59 (35%), Positives = 23/59 (38%), Gaps = 5/59 (8%) Query: 18 PGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMG----PFFPVSPWSPFSPARPSGPVLP 72 PG PG P P+ P G GP GP G G P SP + P P LP Sbjct: 239 PGEPGDP-GPMGPIGSRGPEGPPGKPGEDGEPGRNGNPGEVGFAGSPGARGFPGAPGLP 296 Score = 30.4 bits (67), Expect = 0.57 Identities = 22/54 (40%), Positives = 26/54 (48%), Gaps = 5/54 (9%) Query: 19 GSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPAR--PSGPV 70 G+ G P PL P GP GP G P G +GP P S +P S P+G V Sbjct: 795 GARGLP-GPLGPPGPAGPTGEKGEPGPRGLVGP--PGSRGNPGSRGENGPTGAV 845 Score = 30.0 bits (66), Expect = 0.74 Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 4/58 (6%) Query: 19 GSPGSP--CSPLSPFGPGGPIGPTSPFSPSGPMGP-FFPVSPWSPFSPARPSGPVLPL 73 G+PGS P P G GP+GP G +GP P + P +P GP+ PL Sbjct: 315 GAPGSKGEAGPTGPMGAMGPLGPRGMPGERGRLGPQGAPGQRGAHGMPGKP-GPMGPL 371 Score = 30.0 bits (66), Expect = 0.74 Identities = 17/42 (40%), Positives = 19/42 (45%), Gaps = 5/42 (11%) Query: 15 LQTPGSPGSPCSP-----LSPFGPGGPIGPTSPFSPSGPMGP 51 L PGS G P +P P G GP GP +GP GP Sbjct: 371 LGIPGSSGFPGNPGMKGEAGPTGARGPEGPQGQRGETGPPGP 412 Score = 29.6 bits (65), Expect = 0.96 Identities = 22/59 (37%), Positives = 25/59 (42%), Gaps = 9/59 (15%) Query: 18 PGSPGSPCSP--LSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPAR-----PSGP 69 PG+ G P S + P GP G GP P G GP P P S R P+GP Sbjct: 905 PGATGFPGSAGRVGPPGPAGAPGPAGPLGEPGKEGP--PGLRGDPGSHGRVGDRGPAGP 961 Score = 28.9 bits (63), Expect = 1.6 Identities = 19/53 (35%), Positives = 20/53 (37%), Gaps = 1/53 (1%) Query: 18 PGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPV 70 PG PG P PL G G G +GP G P P P GPV Sbjct: 362 PGKPG-PMGPLGIPGSSGFPGNPGMKGEAGPTGARGPEGPQGQRGETGPPGPV 413 Score = 28.9 bits (63), Expect = 1.6 Identities = 14/35 (40%), Positives = 16/35 (45%), Gaps = 2/35 (5%) Query: 18 PGSPG--SPCSPLSPFGPGGPIGPTSPFSPSGPMG 50 PG+PG P GP GP G P GP+G Sbjct: 380 PGNPGMKGEAGPTGARGPEGPQGQRGETGPPGPVG 414 Score = 28.5 bits (62), Expect = 2.1 Identities = 17/51 (33%), Positives = 19/51 (37%), Gaps = 1/51 (1%) Query: 18 PGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSG 68 PG G+P GP GP+GP G GP P P P G Sbjct: 638 PGQRGAPGKD-GEVGPSGPVGPPGLAGERGEQGPPGPTGFQGLPGPPGPPG 687 Score = 28.1 bits (61), Expect = 2.8 Identities = 22/54 (40%), Positives = 24/54 (44%), Gaps = 5/54 (9%) Query: 18 PGSPGSPCSP--LSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGP 69 PG GSP P + G G GPT SGP G P P SP P +GP Sbjct: 410 PGPVGSPGLPGAIGTDGTPGAKGPTGSPGTSGPPGSAGP--PGSP-GPQGSTGP 460 Score = 28.1 bits (61), Expect = 2.8 Identities = 18/48 (37%), Positives = 18/48 (37%), Gaps = 5/48 (10%) Query: 18 PGSPG-----SPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSP 60 PG PG P P G GPIGP GP G V P P Sbjct: 470 PGVPGFKGEAGPKGEPGPHGIQGPIGPPGEEGKRGPRGDPGTVGPPGP 517 Score = 27.7 bits (60), Expect = 3.7 Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 2/36 (5%) Query: 17 TPGSPGSPCSP--LSPFGPGGPIGPTSPFSPSGPMG 50 TPG+ G SP P G GP G P +GP G Sbjct: 427 TPGAKGPTGSPGTSGPPGSAGPPGSPGPQGSTGPQG 462 Score = 27.3 bits (59), Expect = 4.8 Identities = 15/45 (33%), Positives = 17/45 (37%), Gaps = 11/45 (24%) Query: 18 PGSPG-----------SPCSPLSPFGPGGPIGPTSPFSPSGPMGP 51 PG PG P + G G GPT P GP+GP Sbjct: 293 PGLPGLKGHRGHKGLEGPKGEVGAPGSKGEAGPTGPMGAMGPLGP 337 Score = 27.3 bits (59), Expect = 4.8 Identities = 18/53 (33%), Positives = 18/53 (33%), Gaps = 2/53 (3%) Query: 18 PGSPGSPC--SPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSG 68 PG PG P P G GP G P P G G P P P G Sbjct: 467 PGDPGVPGFKGEAGPKGEPGPHGIQGPIGPPGEEGKRGPRGDPGTVGPPGPVG 519 Score = 26.9 bits (58), Expect = 6.2 Identities = 16/55 (29%), Positives = 22/55 (40%), Gaps = 11/55 (20%) Query: 17 TPGSPGSPCSPLSPF-----------GPGGPIGPTSPFSPSGPMGPFFPVSPWSP 60 +PG+ G P +P P GP G +G +GP GP + P P Sbjct: 283 SPGARGFPGAPGLPGLKGHRGHKGLEGPKGEVGAPGSKGEAGPTGPMGAMGPLGP 337 Score = 26.9 bits (58), Expect = 6.2 Identities = 19/54 (35%), Positives = 19/54 (35%), Gaps = 2/54 (3%) Query: 19 GSPGSPCSP--LSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPV 70 G PG P P GP G GP P GP G P P GPV Sbjct: 465 GQPGDPGVPGFKGEAGPKGEPGPHGIQGPIGPPGEEGKRGPRGDPGTVGPPGPV 518 >gi|23592228 extraembryonic, spermatogenesis, homeobox 1-like [Homo sapiens] Length = 406 Score = 42.0 bits (97), Expect = 2e-04 Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 6/62 (9%) Query: 18 PGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGP------FFPVSPWSPFSPARPSGPVL 71 P P P P+ P P P+ P +P P M P PV PW P +P P P+ Sbjct: 251 PMPPRPPMVPMPPRPPIAPMPPMAPVPPGSRMAPVPPGPRMAPVPPWPPMAPVPPWPPMA 310 Query: 72 PL 73 P+ Sbjct: 311 PV 312 Score = 41.2 bits (95), Expect = 3e-04 Identities = 23/69 (33%), Positives = 29/69 (42%), Gaps = 6/69 (8%) Query: 18 PGSPGSPCSPLSPFGPGGPIGPT------SPFSPSGPMGPFFPVSPWSPFSPARPSGPVL 71 P P +P P++P PG + P +P P PM P P P +P P PV Sbjct: 263 PRPPIAPMPPMAPVPPGSRMAPVPPGPRMAPVPPWPPMAPVPPWPPMAPVPTGPPMAPVP 322 Query: 72 PLKPSERFP 80 P P R P Sbjct: 323 PGPPMARVP 331 Score = 39.7 bits (91), Expect = 0.001 Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 9/69 (13%) Query: 18 PGSPGSPCSPLSPFGPGGPIG------PTSPFSPSGPMGPFFPVSPWSPFSPARPSGPVL 71 P +P P P++ PG P+ P +P P PM P+ P P +P P P+ Sbjct: 317 PMAPVPPGPPMARVPPGPPMARVPPGPPMAPLPPGPPMA---PLPPGPPMAPLPPGPPMA 373 Query: 72 PLKPSERFP 80 PL P P Sbjct: 374 PLPPRSHVP 382 Score = 38.5 bits (88), Expect = 0.002 Identities = 21/66 (31%), Positives = 27/66 (40%), Gaps = 3/66 (4%) Query: 18 PGSPGSPCSPLSPFGPGGPIGPTSPFS---PSGPMGPFFPVSPWSPFSPARPSGPVLPLK 74 P G P +P+ P P + P P + P PM P P P +P P P P+ P Sbjct: 311 PVPTGPPMAPVPPGPPMARVPPGPPMARVPPGPPMAPLPPGPPMAPLPPGPPMAPLPPGP 370 Query: 75 PSERFP 80 P P Sbjct: 371 PMAPLP 376 Score = 37.4 bits (85), Expect = 0.005 Identities = 22/63 (34%), Positives = 25/63 (39%) Query: 18 PGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPVLPLKPSE 77 PGS +P P P P P +P P PM P P +P P P V P P Sbjct: 278 PGSRMAPVPPGPRMAPVPPWPPMAPVPPWPPMAPVPTGPPMAPVPPGPPMARVPPGPPMA 337 Query: 78 RFP 80 R P Sbjct: 338 RVP 340 Score = 35.8 bits (81), Expect = 0.013 Identities = 21/64 (32%), Positives = 25/64 (39%), Gaps = 6/64 (9%) Query: 18 PGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFP------VSPWSPFSPARPSGPVL 71 PG +P P P P P P +P PM P P V P P + P P+ Sbjct: 287 PGPRMAPVPPWPPMAPVPPWPPMAPVPTGPPMAPVPPGPPMARVPPGPPMARVPPGPPMA 346 Query: 72 PLKP 75 PL P Sbjct: 347 PLPP 350 >gi|56243590 WD repeat domain 33 isoform 1 [Homo sapiens] Length = 1336 Score = 41.6 bits (96), Expect = 2e-04 Identities = 21/49 (42%), Positives = 21/49 (42%) Query: 27 PLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPVLPLKP 75 P P GP GP GP P G MGP P P P P GP L P Sbjct: 683 PHGPLGPQGPPGPQGSSGPQGHMGPQGPPGPQGHIGPQGPPGPQGHLGP 731 Score = 40.4 bits (93), Expect = 5e-04 Identities = 21/58 (36%), Positives = 23/58 (39%) Query: 15 LQTPGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPVLP 72 +Q P P P P GP G GP P GP GP + P P P GP P Sbjct: 677 MQRHPGPHGPLGPQGPPGPQGSSGPQGHMGPQGPPGPQGHIGPQGPPGPQGHLGPQGP 734 Score = 40.4 bits (93), Expect = 5e-04 Identities = 23/55 (41%), Positives = 25/55 (45%), Gaps = 1/55 (1%) Query: 21 PGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPVLPLKP 75 PG P PL P GP GP G + P GP GP P P P P G + P P Sbjct: 681 PG-PHGPLGPQGPPGPQGSSGPQGHMGPQGPPGPQGHIGPQGPPGPQGHLGPQGP 734 Score = 38.5 bits (88), Expect = 0.002 Identities = 19/51 (37%), Positives = 21/51 (41%) Query: 18 PGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSG 68 P P P P GP G +GP P P G +GP P P P P G Sbjct: 686 PLGPQGPPGPQGSSGPQGHMGPQGPPGPQGHIGPQGPPGPQGHLGPQGPPG 736 Score = 37.4 bits (85), Expect = 0.005 Identities = 20/57 (35%), Positives = 21/57 (36%) Query: 16 QTPGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPVLP 72 Q P P P GP GP GP P GP GP + P P GP P Sbjct: 690 QGPPGPQGSSGPQGHMGPQGPPGPQGHIGPQGPPGPQGHLGPQGPPGTQGMQGPPGP 746 Score = 36.6 bits (83), Expect = 0.008 Identities = 22/63 (34%), Positives = 23/63 (36%) Query: 13 PHLQTPGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPVLP 72 P Q P P P GP G IGP P P G +GP P P P G P Sbjct: 693 PGPQGSSGPQGHMGPQGPPGPQGHIGPQGPPGPQGHLGPQGPPGTQGMQGPPGPRGMQGP 752 Query: 73 LKP 75 P Sbjct: 753 PHP 755 Score = 35.0 bits (79), Expect = 0.023 Identities = 20/55 (36%), Positives = 22/55 (40%), Gaps = 1/55 (1%) Query: 14 HLQTPGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSG 68 H+ G PG P + P GP GP G P P G G P P P P G Sbjct: 704 HMGPQGPPG-PQGHIGPQGPPGPQGHLGPQGPPGTQGMQGPPGPRGMQGPPHPHG 757 Score = 32.3 bits (72), Expect = 0.15 Identities = 20/58 (34%), Positives = 20/58 (34%) Query: 18 PGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPVLPLKP 75 P P P P G GP GP P GP GP P P P G P P Sbjct: 689 PQGPPGPQGSSGPQGHMGPQGPPGPQGHIGPQGPPGPQGHLGPQGPPGTQGMQGPPGP 746 Score = 30.8 bits (68), Expect = 0.43 Identities = 18/53 (33%), Positives = 21/53 (39%) Query: 28 LSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPVLPLKPSERFP 80 ++ GP GP G P P G MGP P P GP P P + P Sbjct: 614 MAQMGPPGPQGQFRPPGPQGQMGPQGPPLHQGGGGPQGFMGPQGPQGPPQGLP 666 Score = 29.6 bits (65), Expect = 0.96 Identities = 23/73 (31%), Positives = 24/73 (32%), Gaps = 10/73 (13%) Query: 13 PHLQTPGSPGSPCSPLSPFGPG----------GPIGPTSPFSPSGPMGPFFPVSPWSPFS 62 P Q G P P P GP GP G P GP+GP P P Sbjct: 641 PLHQGGGGPQGFMGPQGPQGPPQGLPRPQDMHGPQGMQRHPGPHGPLGPQGPPGPQGSSG 700 Query: 63 PARPSGPVLPLKP 75 P GP P P Sbjct: 701 PQGHMGPQGPPGP 713 Score = 29.3 bits (64), Expect = 1.3 Identities = 25/83 (30%), Positives = 27/83 (32%), Gaps = 16/83 (19%) Query: 9 STMLPHLQTPGSPGSPCSPLSPFGPGGPIGPTSP------FSPSGPMGPFFPVSP----- 57 S +P P P P GP G +GP P P G MGP P P Sbjct: 607 SQQMPMNMAQMGPPGPQGQFRPPGPQGQMGPQGPPLHQGGGGPQGFMGPQGPQGPPQGLP 666 Query: 58 -----WSPFSPARPSGPVLPLKP 75 P R GP PL P Sbjct: 667 RPQDMHGPQGMQRHPGPHGPLGP 689 >gi|239582763 ral guanine nucleotide dissociation stimulator-like 3 isoform 2 [Homo sapiens] Length = 710 Score = 41.2 bits (95), Expect = 3e-04 Identities = 37/77 (48%), Positives = 39/77 (50%), Gaps = 16/77 (20%) Query: 19 GSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGP--VLPLK-- 74 GSPG P SP S PG P P+SP S P G SP P SP P GP LPL Sbjct: 539 GSPGDPSSPTSSVSPGSP--PSSPRSRDAPAG-----SP--PASPG-PQGPSTKLPLSLD 588 Query: 75 -PSERFPFHLSLLSCRL 90 PS R PF L L S R+ Sbjct: 589 LPSPR-PFALPLGSPRI 604 >gi|169175458 PREDICTED: similar to hCG2040468 [Homo sapiens] Length = 376 Score = 40.8 bits (94), Expect = 4e-04 Identities = 28/85 (32%), Positives = 41/85 (48%), Gaps = 12/85 (14%) Query: 18 PGSPGSPCSPLSPFGPGGPI---GPTSPFSPSGPM------GPFFPVSPWSPFSPARPSG 68 P + P PL+ GP P+ GP P + +GP+ GP P++ P P +G Sbjct: 84 PLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTG 143 Query: 69 PVLPLKPSERFPFHLSLLSCRLYHL 93 P+ PL ++ P H LL C+ HL Sbjct: 144 PLHPL--TDTGPLH-PLLLCQDPHL 165 Score = 40.0 bits (92), Expect = 7e-04 Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 2/65 (3%) Query: 18 PGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPVLPLKPSE 77 P + P PL+ GP P+ T P P GP P++ P P +GP+ PL ++ Sbjct: 30 PLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPL--TD 87 Query: 78 RFPFH 82 P H Sbjct: 88 TGPLH 92 Score = 40.0 bits (92), Expect = 7e-04 Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 2/65 (3%) Query: 18 PGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPVLPLKPSE 77 P + P PL+ GP P+ T P P GP P++ P P +GP+ PL ++ Sbjct: 39 PLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPL--TD 96 Query: 78 RFPFH 82 P H Sbjct: 97 TGPLH 101 Score = 40.0 bits (92), Expect = 7e-04 Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 2/65 (3%) Query: 18 PGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPVLPLKPSE 77 P + P PL+ GP P+ T P P GP P++ P P +GP+ PL ++ Sbjct: 48 PLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPL--TD 105 Query: 78 RFPFH 82 P H Sbjct: 106 TGPLH 110 Score = 40.0 bits (92), Expect = 7e-04 Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 2/65 (3%) Query: 18 PGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPVLPLKPSE 77 P + P PL+ GP P+ T P P GP P++ P P +GP+ PL ++ Sbjct: 57 PLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPL--TD 114 Query: 78 RFPFH 82 P H Sbjct: 115 TGPLH 119 Score = 40.0 bits (92), Expect = 7e-04 Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 2/65 (3%) Query: 18 PGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPVLPLKPSE 77 P + P PL+ GP P+ T P P GP P++ P P +GP+ PL ++ Sbjct: 66 PLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPL--TD 123 Query: 78 RFPFH 82 P H Sbjct: 124 TGPLH 128 Score = 40.0 bits (92), Expect = 7e-04 Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 2/65 (3%) Query: 18 PGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPVLPLKPSE 77 P + P PL+ GP P+ T P P GP P++ P P +GP+ PL ++ Sbjct: 75 PLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPL--TD 132 Query: 78 RFPFH 82 P H Sbjct: 133 TGPLH 137 Score = 39.7 bits (91), Expect = 0.001 Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 2/59 (3%) Query: 24 PCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPVLPLKPSERFPFH 82 P PL+ GP P+ T P P GP P++ P P +GP+ PL ++ P H Sbjct: 27 PLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPL--TDTGPLH 83 Score = 27.3 bits (59), Expect = 4.8 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 4/54 (7%) Query: 18 PGSPGSPCSPLSPFGPGGPI---GPTSPFSPSGPMGPFFPV-SPWSPFSPARPS 67 P + P PL+ GP P+ GP P + +GP+ P P P + AR S Sbjct: 120 PLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLLLCQDPHLPAAAARGS 173 >gi|48762934 alpha 2 type I collagen [Homo sapiens] Length = 1366 Score = 40.4 bits (93), Expect = 5e-04 Identities = 22/58 (37%), Positives = 24/58 (41%), Gaps = 2/58 (3%) Query: 14 HLQTPGSPGS--PCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGP 69 H G PG+ P GP GP+GP G GP PV P P PSGP Sbjct: 944 HKGERGYPGNIGPVGAAGAPGPHGPVGPAGKHGNRGETGPSGPVGPAGAVGPRGPSGP 1001 Score = 39.3 bits (90), Expect = 0.001 Identities = 24/64 (37%), Positives = 26/64 (40%), Gaps = 2/64 (3%) Query: 14 HLQTPGSPGS--PCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPVL 71 H G+PGS P P P GP GP G G +GP P PA P GP Sbjct: 1037 HHGDQGAPGSVGPAGPRGPAGPSGPAGKDGRTGHPGTVGPAGIRGPQGHQGPAGPPGPPG 1096 Query: 72 PLKP 75 P P Sbjct: 1097 PPGP 1100 Score = 34.7 bits (78), Expect = 0.030 Identities = 20/51 (39%), Positives = 23/51 (45%), Gaps = 4/51 (7%) Query: 19 GSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGP 69 GS GS + P GP GPIG P G GP + PA P+GP Sbjct: 235 GSDGS----VGPVGPAGPIGSAGPPGFPGAPGPKGEIGAVGNAGPAGPAGP 281 Score = 34.7 bits (78), Expect = 0.030 Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 4/50 (8%) Query: 19 GSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSG 68 G+ G+P P GP GP G +GP GP P P P+ P G Sbjct: 958 GAAGAP----GPHGPVGPAGKHGNRGETGPSGPVGPAGAVGPRGPSGPQG 1003 Score = 33.5 bits (75), Expect = 0.067 Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 1/51 (1%) Query: 18 PGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSG 68 PG+ G + P G G +GPT P +GP GP P P P G Sbjct: 735 PGAKGERGAK-GPKGENGVVGPTGPVGAAGPAGPNGPPGPAGSRGDGGPPG 784 Score = 32.7 bits (73), Expect = 0.11 Identities = 15/37 (40%), Positives = 16/37 (43%) Query: 32 GPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSG 68 GP GP G P SG GP P+ P P P G Sbjct: 583 GPAGPRGERGPPGESGAAGPTGPIGSRGPSGPPGPDG 619 Score = 32.3 bits (72), Expect = 0.15 Identities = 21/65 (32%), Positives = 21/65 (32%), Gaps = 12/65 (18%) Query: 18 PGSPGSPCSPLSPFGPGGP------------IGPTSPFSPSGPMGPFFPVSPWSPFSPAR 65 P P P P G GGP GP P SGP GP P P Sbjct: 764 PAGPNGPPGPAGSRGDGGPPGMTGFPGAAGRTGPPGPSGISGPPGPPGPAGKEGLRGPRG 823 Query: 66 PSGPV 70 GPV Sbjct: 824 DQGPV 828 Score = 32.0 bits (71), Expect = 0.19 Identities = 20/50 (40%), Positives = 22/50 (44%), Gaps = 1/50 (2%) Query: 19 GSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSG 68 GS G P P +P GP G IG P+GP GP V P P G Sbjct: 250 GSAGPPGFPGAP-GPKGEIGAVGNAGPAGPAGPRGEVGLPGLSGPVGPPG 298 Score = 31.6 bits (70), Expect = 0.25 Identities = 22/70 (31%), Positives = 23/70 (32%), Gaps = 16/70 (22%) Query: 18 PGSPGSPCSPLSPFGPGGPIG---------------PTSPFSPSGPMGPFFPVSPWSPFS 62 PG PG P P GP G +G P P GP G P P Sbjct: 549 PGPPGFQGLP-GPSGPAGEVGKPGERGLHGEFGLPGPAGPRGERGPPGESGAAGPTGPIG 607 Query: 63 PARPSGPVLP 72 PSGP P Sbjct: 608 SRGPSGPPGP 617 Score = 31.6 bits (70), Expect = 0.25 Identities = 15/37 (40%), Positives = 15/37 (40%) Query: 15 LQTPGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGP 51 L P P P G GP GP PSGP GP Sbjct: 581 LPGPAGPRGERGPPGESGAAGPTGPIGSRGPSGPPGP 617 Score = 31.2 bits (69), Expect = 0.33 Identities = 20/58 (34%), Positives = 20/58 (34%) Query: 12 LPHLQTPGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGP 69 LP P P GP GPIG P P GP G A PSGP Sbjct: 581 LPGPAGPRGERGPPGESGAAGPTGPIGSRGPSGPPGPDGNKGEPGVVGAVGTAGPSGP 638 Score = 30.4 bits (67), Expect = 0.57 Identities = 18/50 (36%), Positives = 20/50 (40%), Gaps = 1/50 (2%) Query: 19 GSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSG 68 G+PG P G G GP P P G G V P P A P+G Sbjct: 682 GAPG-PAGATGDRGEAGAAGPAGPAGPRGSPGERGEVGPAGPNGFAGPAG 730 Score = 30.4 bits (67), Expect = 0.57 Identities = 17/55 (30%), Positives = 18/55 (32%) Query: 18 PGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPVLP 72 P P P G G G P G G P P PA P+GP P Sbjct: 719 PAGPNGFAGPAGAAGQPGAKGERGAKGPKGENGVVGPTGPVGAAGPAGPNGPPGP 773 Score = 30.0 bits (66), Expect = 0.74 Identities = 21/66 (31%), Positives = 24/66 (36%), Gaps = 16/66 (24%) Query: 19 GSPGSPCSPLSPFGPGGPIGPT---------------SPFSPSGPMGPFFPVSPWSPFSP 63 GSPG + P GP G GP P +G +GP PV P P Sbjct: 709 GSPGER-GEVGPAGPNGFAGPAGAAGQPGAKGERGAKGPKGENGVVGPTGPVGAAGPAGP 767 Query: 64 ARPSGP 69 P GP Sbjct: 768 NGPPGP 773 Score = 30.0 bits (66), Expect = 0.74 Identities = 18/56 (32%), Positives = 20/56 (35%) Query: 21 PGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPVLPLKPS 76 P P P G G G GP G V P P A P+GP P P+ Sbjct: 719 PAGPNGFAGPAGAAGQPGAKGERGAKGPKGENGVVGPTGPVGAAGPAGPNGPPGPA 774 Score = 29.6 bits (65), Expect = 0.96 Identities = 15/38 (39%), Positives = 15/38 (39%) Query: 32 GPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGP 69 GP G GP P GP G P P P P GP Sbjct: 33 GPAGDRGPRGERGPPGPPGRDGEDGPTGPPGPPGPPGP 70 Score = 29.3 bits (64), Expect = 1.3 Identities = 14/31 (45%), Positives = 14/31 (45%) Query: 21 PGSPCSPLSPFGPGGPIGPTSPFSPSGPMGP 51 P P P G G GPT P P GP GP Sbjct: 40 PRGERGPPGPPGRDGEDGPTGPPGPPGPPGP 70 Score = 29.3 bits (64), Expect = 1.3 Identities = 18/52 (34%), Positives = 20/52 (38%), Gaps = 4/52 (7%) Query: 17 TPGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSG 68 TPG G+ P G G +G P G G PV P P A P G Sbjct: 209 TPGQTGARGLP----GERGRVGAPGPAGARGSDGSVGPVGPAGPIGSAGPPG 256 Score = 29.3 bits (64), Expect = 1.3 Identities = 11/24 (45%), Positives = 12/24 (50%) Query: 27 PLSPFGPGGPIGPTSPFSPSGPMG 50 P P GP G +GP P P G G Sbjct: 983 PSGPVGPAGAVGPRGPSGPQGIRG 1006 Score = 28.9 bits (63), Expect = 1.6 Identities = 20/61 (32%), Positives = 24/61 (39%), Gaps = 6/61 (9%) Query: 18 PGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPVLPLKPSE 77 PG+ G+P P G GP G +GP G P P P P P +P E Sbjct: 102 PGAAGAP----GPQGFQGPAGEPGEPGQTGPAGARGPAGP--PGKAGEDGHPGKPGRPGE 155 Query: 78 R 78 R Sbjct: 156 R 156 Score = 28.9 bits (63), Expect = 1.6 Identities = 16/47 (34%), Positives = 18/47 (38%), Gaps = 1/47 (2%) Query: 18 PGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPA 64 PG G+ P P G GP GP P G G V P P+ Sbjct: 594 PGESGA-AGPTGPIGSRGPSGPPGPDGNKGEPGVVGAVGTAGPSGPS 639 Score = 28.5 bits (62), Expect = 2.1 Identities = 15/35 (42%), Positives = 16/35 (45%), Gaps = 2/35 (5%) Query: 19 GSPGS--PCSPLSPFGPGGPIGPTSPFSPSGPMGP 51 G PGS P P P G G GP +GP GP Sbjct: 361 GEPGSAGPQGPPGPSGEEGKRGPNGEAGSAGPPGP 395 Score = 28.5 bits (62), Expect = 2.1 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 4/34 (11%) Query: 18 PGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGP 51 PGSPG+ + P G GP+G GP+GP Sbjct: 453 PGSPGN----IGPAGKEGPVGLPGIDGRPGPIGP 482 Score = 28.5 bits (62), Expect = 2.1 Identities = 18/50 (36%), Positives = 20/50 (40%), Gaps = 1/50 (2%) Query: 19 GSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSG 68 G PG P GP G GP+ P P G G V P+ PSG Sbjct: 592 GPPGES-GAAGPTGPIGSRGPSGPPGPDGNKGEPGVVGAVGTAGPSGPSG 640 Score = 28.1 bits (61), Expect = 2.8 Identities = 14/37 (37%), Positives = 15/37 (40%) Query: 21 PGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSP 57 P P GP GP G P+GP GP P P Sbjct: 34 PAGDRGPRGERGPPGPPGRDGEDGPTGPPGPPGPPGP 70 Score = 27.7 bits (60), Expect = 3.7 Identities = 15/39 (38%), Positives = 15/39 (38%) Query: 30 PFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSG 68 P G GP G P P G G P P P P P G Sbjct: 34 PAGDRGPRGERGPPGPPGRDGEDGPTGPPGPPGPPGPPG 72 Score = 27.7 bits (60), Expect = 3.7 Identities = 14/37 (37%), Positives = 14/37 (37%) Query: 24 PCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSP 60 P P G GP GP GP GP P P P Sbjct: 34 PAGDRGPRGERGPPGPPGRDGEDGPTGPPGPPGPPGP 70 Score = 27.7 bits (60), Expect = 3.7 Identities = 16/51 (31%), Positives = 21/51 (41%), Gaps = 4/51 (7%) Query: 19 GSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGP 69 G+PG+ +P GP G G +GP GP P P+GP Sbjct: 676 GAPGAVGAP----GPAGATGDRGEAGAAGPAGPAGPRGSPGERGEVGPAGP 722 Score = 27.7 bits (60), Expect = 3.7 Identities = 17/52 (32%), Positives = 18/52 (34%) Query: 18 PGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGP 69 P P P P GP G G P GP+G V P A GP Sbjct: 797 PPGPSGISGPPGPPGPAGKEGLRGPRGDQGPVGRTGEVGAVGPPGFAGEKGP 848 Score = 27.3 bits (59), Expect = 4.8 Identities = 13/34 (38%), Positives = 13/34 (38%) Query: 18 PGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGP 51 P P P GP G G P P GP GP Sbjct: 34 PAGDRGPRGERGPPGPPGRDGEDGPTGPPGPPGP 67 Score = 27.3 bits (59), Expect = 4.8 Identities = 14/33 (42%), Positives = 14/33 (42%), Gaps = 7/33 (21%) Query: 18 PGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMG 50 PG PG G GP GP P P GP G Sbjct: 47 PGPPGRD-------GEDGPTGPPGPPGPPGPPG 72 Score = 27.3 bits (59), Expect = 4.8 Identities = 17/56 (30%), Positives = 20/56 (35%), Gaps = 5/56 (8%) Query: 18 PGSPGSP-----CSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSG 68 PG+ G+P G GP GP P G G P P PA +G Sbjct: 678 PGAVGAPGPAGATGDRGEAGAAGPAGPAGPRGSPGERGEVGPAGPNGFAGPAGAAG 733 Score = 26.9 bits (58), Expect = 6.2 Identities = 19/58 (32%), Positives = 22/58 (37%), Gaps = 1/58 (1%) Query: 18 PGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPVLPLKP 75 PG G P GP GP G + P P GP G P P +G V + P Sbjct: 783 PGMTGFP-GAAGRTGPPGPSGISGPPGPPGPAGKEGLRGPRGDQGPVGRTGEVGAVGP 839 Score = 26.9 bits (58), Expect = 6.2 Identities = 12/34 (35%), Positives = 13/34 (38%) Query: 18 PGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGP 51 P P P + P GP GP G G GP Sbjct: 983 PSGPVGPAGAVGPRGPSGPQGIRGDKGEPGEKGP 1016 Score = 26.6 bits (57), Expect = 8.2 Identities = 22/65 (33%), Positives = 26/65 (40%), Gaps = 3/65 (4%) Query: 14 HLQTPGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPVLPL 73 H G+ G+P P G GP GP G GP P P+ P+G V Sbjct: 512 HAGLAGARGAP-GPDGNNGAQGPPGPQGVQGGKGEQGPPGPPGFQGLPGPSGPAGEV--G 568 Query: 74 KPSER 78 KP ER Sbjct: 569 KPGER 573 Score = 26.6 bits (57), Expect = 8.2 Identities = 20/57 (35%), Positives = 24/57 (42%), Gaps = 7/57 (12%) Query: 18 PGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSP-WSP-----FSPARPSG 68 PG G+ +P G GP G T +G GP P P SP PA P+G Sbjct: 669 PGRDGARGAP-GAVGAPGPAGATGDRGEAGAAGPAGPAGPRGSPGERGEVGPAGPNG 724 >gi|4505939 DNA-directed RNA polymerase II A [Homo sapiens] Length = 1970 Score = 40.4 bits (93), Expect = 5e-04 Identities = 30/62 (48%), Positives = 37/62 (59%), Gaps = 11/62 (17%) Query: 17 TPGSPGSPCSPLSPF--GPGGPI----GPTSP-FSPSGPMGPFFPVSP-WSPFSPA-RPS 67 TPGSPGSP P SP+ PGG + PTSP + P P G + P SP +SP SP+ P+ Sbjct: 1568 TPGSPGSP-GPSSPYIPSPGGAMSPSYSPTSPAYEPRSP-GGYTPQSPSYSPTSPSYSPT 1625 Query: 68 GP 69 P Sbjct: 1626 SP 1627 >gi|18105032 type X collagen alpha 1 precursor [Homo sapiens] Length = 680 Score = 40.4 bits (93), Expect = 5e-04 Identities = 25/65 (38%), Positives = 31/65 (47%), Gaps = 11/65 (16%) Query: 18 PGSPGSPCSP--LSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPVLPLKP 75 PG PG P P P+GP G +GP P GP GP P P P+G +P KP Sbjct: 108 PGVPGLPGKPGERGPYGPKGDVGPAGLPGPRGPPGP--------PGIPG-PAGISVPGKP 158 Query: 76 SERFP 80 ++ P Sbjct: 159 GQQGP 163 Score = 38.1 bits (87), Expect = 0.003 Identities = 27/75 (36%), Positives = 31/75 (41%), Gaps = 20/75 (26%) Query: 19 GSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMG------------PFFPVSPWSPFSPARP 66 G G+P GP GP GP PSGP G P P P P + +P Sbjct: 57 GEQGTP-------GPPGPAGPRGHPGPSGPPGKPGYGSPGLQGEPGLP-GPPGPSAVGKP 108 Query: 67 SGPVLPLKPSERFPF 81 P LP KP ER P+ Sbjct: 109 GVPGLPGKPGERGPY 123 Score = 35.4 bits (80), Expect = 0.018 Identities = 25/66 (37%), Positives = 26/66 (39%), Gaps = 11/66 (16%) Query: 18 PGSPGSPCSPLSPFGPGGP----------IGPTSPFSPSGPMG-PFFPVSPWSPFSPARP 66 PG PG P S P PG P GPT P P GP G P P P P P Sbjct: 457 PGIPGFPGSKGDPGSPGPPGPAGIATKGLNGPTGPPGPPGPRGHSGEPGLPGPPGPPGPP 516 Query: 67 SGPVLP 72 V+P Sbjct: 517 GQAVMP 522 Score = 33.1 bits (74), Expect = 0.087 Identities = 20/52 (38%), Positives = 23/52 (44%), Gaps = 1/52 (1%) Query: 18 PGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGP 69 PG PG P G GPIGP P P G GP P + +P +P P Sbjct: 228 PGQPGIKGDRGFP-GEMGPIGPPGPQGPPGERGPEGIGKPGAAGAPGQPGIP 278 Score = 28.5 bits (62), Expect = 2.1 Identities = 22/66 (33%), Positives = 26/66 (39%), Gaps = 10/66 (15%) Query: 18 PGSPG--SPCSPLSPFGPGGPIG------PTSPFSPSGPMGPFFPVSPWSPFSPARPSGP 69 PG PG P + P GP G G P P+GP G +P + SP P Sbjct: 331 PGKPGLTGPPGNMGPQGPKGIPGSHGLPGPKGETGPAGPAG--YPGAKGERGSPGSDGKP 388 Query: 70 VLPLKP 75 P KP Sbjct: 389 GYPGKP 394 Score = 28.1 bits (61), Expect = 2.8 Identities = 17/39 (43%), Positives = 19/39 (48%), Gaps = 2/39 (5%) Query: 13 PHLQTP-GSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMG 50 P L P G+PG P P G GGP G P P+G G Sbjct: 394 PGLDGPKGNPGLP-GPKGDPGVGGPPGLPGPVGPAGAKG 431 Score = 26.9 bits (58), Expect = 6.2 Identities = 23/68 (33%), Positives = 24/68 (35%), Gaps = 18/68 (26%) Query: 18 PGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMG----------------PFFPVSPWSPF 61 PG G P P P GP G G +GP G P FP S P Sbjct: 412 PGVGGPPGLP-GPVGPAGAKGMPGHNGEAGPRGAPGIPGTRGPIGPPGIPGFPGSKGDPG 470 Query: 62 SPARPSGP 69 SP P GP Sbjct: 471 SPG-PPGP 477 Score = 26.6 bits (57), Expect = 8.2 Identities = 25/79 (31%), Positives = 26/79 (32%), Gaps = 29/79 (36%) Query: 19 GSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMG---------PFFP--------VSPWSPF 61 G+PG P G G GP P PSGP G P P P Sbjct: 194 GAPGRP-------GERGLPGPQGPTGPSGPPGVGKRGENGVPGQPGIKGDRGFPGEMGPI 246 Query: 62 SPARPSGPVLPLKPSERFP 80 P P GP P ER P Sbjct: 247 GPPGPQGP-----PGERGP 260 >gi|194248060 outer dense fiber of sperm tails 1 [Homo sapiens] Length = 250 Score = 40.4 bits (93), Expect = 5e-04 Identities = 17/32 (53%), Positives = 18/32 (56%) Query: 20 SPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGP 51 SP SPCSP SP P P P SP+ P P P Sbjct: 207 SPCSPCSPCSPCNPCSPCNPCSPYDPCNPCYP 238 Score = 39.3 bits (90), Expect = 0.001 Identities = 19/46 (41%), Positives = 22/46 (47%), Gaps = 5/46 (10%) Query: 23 SPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSG 68 SPC P + P P SP SP P P P SP+ P +P P G Sbjct: 200 SPCYPCT-----SPCSPCSPCSPCNPCSPCNPCSPYDPCNPCYPCG 240 Score = 38.1 bits (87), Expect = 0.003 Identities = 17/37 (45%), Positives = 20/37 (54%) Query: 17 TPGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFF 53 +P SP SPCSP +P P P P P +P P G F Sbjct: 207 SPCSPCSPCSPCNPCSPCNPCSPYDPCNPCYPCGSRF 243 >gi|38570075 collagen, type XXV, alpha 1 isoform 1 [Homo sapiens] Length = 654 Score = 40.4 bits (93), Expect = 5e-04 Identities = 23/52 (44%), Positives = 24/52 (46%), Gaps = 3/52 (5%) Query: 19 GSPGSPCSP--LSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSG 68 G PG P P + P GP GP GP P P G GP P P PA P G Sbjct: 518 GMPG-PQGPSIIGPPGPPGPHGPPGPMGPHGLPGPKGTDGPMGPHGPAGPKG 568 Score = 38.9 bits (89), Expect = 0.002 Identities = 25/60 (41%), Positives = 27/60 (45%), Gaps = 6/60 (10%) Query: 1 MPTEKADLSTMLPHLQTPGSPGSPCSPLSPFGPGGPIGP---TSPFSPSGPMGPFFPVSP 57 M EK D +P Q P G P P P GP GP+GP P GPMGP P P Sbjct: 510 MKGEKGDSG--MPGPQGPSIIGPP-GPPGPHGPPGPMGPHGLPGPKGTDGPMGPHGPAGP 566 Score = 38.5 bits (88), Expect = 0.002 Identities = 23/56 (41%), Positives = 23/56 (41%), Gaps = 6/56 (10%) Query: 19 GSPGSPCSPLSPFGPG--GPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPVLP 72 G G P P GP GP GP P P GPMGP P P P GP P Sbjct: 515 GDSGMP----GPQGPSIIGPPGPPGPHGPPGPMGPHGLPGPKGTDGPMGPHGPAGP 566 Score = 38.1 bits (87), Expect = 0.003 Identities = 25/68 (36%), Positives = 29/68 (42%), Gaps = 2/68 (2%) Query: 18 PGSPG-SPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPVLPL-KP 75 PG G S P P GP GP GP P GP G P+ P P P G + +P Sbjct: 520 PGPQGPSIIGPPGPPGPHGPPGPMGPHGLPGPKGTDGPMGPHGPAGPKGERGEKGAMGEP 579 Query: 76 SERFPFHL 83 R P+ L Sbjct: 580 GPRGPYGL 587 Score = 29.6 bits (65), Expect = 0.96 Identities = 16/43 (37%), Positives = 17/43 (39%), Gaps = 1/43 (2%) Query: 11 MLPH-LQTPGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPF 52 M PH L P P P P GP G G GP GP+ Sbjct: 543 MGPHGLPGPKGTDGPMGPHGPAGPKGERGEKGAMGEPGPRGPY 585 Score = 28.9 bits (63), Expect = 1.6 Identities = 19/49 (38%), Positives = 20/49 (40%), Gaps = 3/49 (6%) Query: 27 PLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPVLPLKP 75 P P GP GP GP GP G P P P P G + PL P Sbjct: 196 PPGPPGPPGPRGPPGDTGKDGPRG--MPGVPGEPGKPGE-QGLMGPLGP 241 Score = 27.3 bits (59), Expect = 4.8 Identities = 17/47 (36%), Positives = 18/47 (38%), Gaps = 2/47 (4%) Query: 32 GPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPVLPLKPSER 78 G G GP P P GP GP P P P P KP E+ Sbjct: 189 GDQGQAGPPGPPGPPGPRGP--PGDTGKDGPRGMPGVPGEPGKPGEQ 233 >gi|38570073 collagen, type XXV, alpha 1 isoform 2 [Homo sapiens] Length = 642 Score = 40.4 bits (93), Expect = 5e-04 Identities = 23/52 (44%), Positives = 24/52 (46%), Gaps = 3/52 (5%) Query: 19 GSPGSPCSP--LSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSG 68 G PG P P + P GP GP GP P P G GP P P PA P G Sbjct: 518 GMPG-PQGPSIIGPPGPPGPHGPPGPMGPHGLPGPKGTDGPMGPHGPAGPKG 568 Score = 38.9 bits (89), Expect = 0.002 Identities = 25/60 (41%), Positives = 27/60 (45%), Gaps = 6/60 (10%) Query: 1 MPTEKADLSTMLPHLQTPGSPGSPCSPLSPFGPGGPIGP---TSPFSPSGPMGPFFPVSP 57 M EK D +P Q P G P P P GP GP+GP P GPMGP P P Sbjct: 510 MKGEKGDSG--MPGPQGPSIIGPP-GPPGPHGPPGPMGPHGLPGPKGTDGPMGPHGPAGP 566 Score = 38.5 bits (88), Expect = 0.002 Identities = 23/56 (41%), Positives = 23/56 (41%), Gaps = 6/56 (10%) Query: 19 GSPGSPCSPLSPFGPG--GPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPVLP 72 G G P P GP GP GP P P GPMGP P P P GP P Sbjct: 515 GDSGMP----GPQGPSIIGPPGPPGPHGPPGPMGPHGLPGPKGTDGPMGPHGPAGP 566 Score = 38.1 bits (87), Expect = 0.003 Identities = 25/68 (36%), Positives = 29/68 (42%), Gaps = 2/68 (2%) Query: 18 PGSPG-SPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPVLPL-KP 75 PG G S P P GP GP GP P GP G P+ P P P G + +P Sbjct: 520 PGPQGPSIIGPPGPPGPHGPPGPMGPHGLPGPKGTDGPMGPHGPAGPKGERGEKGAMGEP 579 Query: 76 SERFPFHL 83 R P+ L Sbjct: 580 GPRGPYGL 587 Score = 29.6 bits (65), Expect = 0.96 Identities = 16/43 (37%), Positives = 17/43 (39%), Gaps = 1/43 (2%) Query: 11 MLPH-LQTPGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPF 52 M PH L P P P P GP G G GP GP+ Sbjct: 543 MGPHGLPGPKGTDGPMGPHGPAGPKGERGEKGAMGEPGPRGPY 585 Score = 28.9 bits (63), Expect = 1.6 Identities = 19/49 (38%), Positives = 20/49 (40%), Gaps = 3/49 (6%) Query: 27 PLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPVLPLKP 75 P P GP GP GP GP G P P P P G + PL P Sbjct: 196 PPGPPGPPGPRGPPGDTGKDGPRG--MPGVPGEPGKPGE-QGLMGPLGP 241 Score = 27.3 bits (59), Expect = 4.8 Identities = 17/47 (36%), Positives = 18/47 (38%), Gaps = 2/47 (4%) Query: 32 GPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPVLPLKPSER 78 G G GP P P GP GP P P P P KP E+ Sbjct: 189 GDQGQAGPPGPPGPPGPRGP--PGDTGKDGPRGMPGVPGEPGKPGEQ 233 >gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] Length = 1466 Score = 40.0 bits (92), Expect = 7e-04 Identities = 28/88 (31%), Positives = 33/88 (37%), Gaps = 21/88 (23%) Query: 14 HLQTPGSPGSPCSP-----------LSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSP-- 60 H PG+PG+P SP P GP GP+GP+ P G G P+ P P Sbjct: 1108 HRGFPGNPGAPGSPGPAGQQGAIGSPGPAGPRGPVGPSGPPGKDGTSGHPGPIGPPGPRG 1167 Query: 61 --------FSPARPSGPVLPLKPSERFP 80 SP P P P P P Sbjct: 1168 NRGERGSEGSPGHPGQPGPPGPPGAPGP 1195 Score = 39.3 bits (90), Expect = 0.001 Identities = 21/53 (39%), Positives = 25/53 (47%), Gaps = 1/53 (1%) Query: 17 TPGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGP 69 +PG+PG+P P P GP GP G + SGP GP P P GP Sbjct: 1039 SPGAPGAPGHP-GPPGPVGPAGKSGDRGESGPAGPAGAPGPAGSRGAPGPQGP 1090 Score = 38.5 bits (88), Expect = 0.002 Identities = 26/62 (41%), Positives = 28/62 (45%), Gaps = 6/62 (9%) Query: 17 TPGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPVLPLKPS 76 T G PGSP SP G GP G PSGP GP + P P SG P +P Sbjct: 187 TSGHPGSPGSP----GYQGPPGEPGQAGPSGPPGPPGAIGPSGPAGKDGESG--RPGRPG 240 Query: 77 ER 78 ER Sbjct: 241 ER 242 Score = 38.5 bits (88), Expect = 0.002 Identities = 21/54 (38%), Positives = 24/54 (44%), Gaps = 1/54 (1%) Query: 19 GSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPVLP 72 GSPG+P +P P GP GP+GP G GP P P GP P Sbjct: 1038 GSPGAPGAPGHP-GPPGPVGPAGKSGDRGESGPAGPAGAPGPAGSRGAPGPQGP 1090 Score = 35.4 bits (80), Expect = 0.018 Identities = 25/74 (33%), Positives = 27/74 (36%), Gaps = 22/74 (29%) Query: 18 PGSPGSP-----------CSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARP 66 PGSPGSP P P GP G IGP+ P G G P RP Sbjct: 191 PGSPGSPGYQGPPGEPGQAGPSGPPGPPGAIGPSGPAGKDGESG-----------RPGRP 239 Query: 67 SGPVLPLKPSERFP 80 LP P + P Sbjct: 240 GERGLPGPPGIKGP 253 Score = 35.4 bits (80), Expect = 0.018 Identities = 21/50 (42%), Positives = 24/50 (48%), Gaps = 2/50 (4%) Query: 1 MPTEKADLSTMLPHLQTPGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMG 50 MP E+ L + P G PG P + P G GP GPT P P GP G Sbjct: 727 MPGERGGLGSPGPK-GDKGEPGGPGADGVP-GKDGPRGPTGPIGPPGPAG 774 Score = 35.4 bits (80), Expect = 0.018 Identities = 19/51 (37%), Positives = 21/51 (41%), Gaps = 1/51 (1%) Query: 18 PGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSG 68 PG+PG P P P GP G G P+GP G P P P G Sbjct: 1043 PGAPGHP-GPPGPVGPAGKSGDRGESGPAGPAGAPGPAGSRGAPGPQGPRG 1092 Score = 33.9 bits (76), Expect = 0.051 Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 1/54 (1%) Query: 19 GSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPVLP 72 G+ G+P GPGGP GP P +G GP P P P +GP P Sbjct: 585 GNDGAPGKNGERGGPGGP-GPQGPPGKNGETGPQGPPGPTGPGGDKGDTGPPGP 637 Score = 32.7 bits (73), Expect = 0.11 Identities = 24/66 (36%), Positives = 28/66 (42%), Gaps = 16/66 (24%) Query: 18 PGSPGSPCSPLSPFGPG--------GPIGPTSPFSPSGPMGPFFPVSPWSPFSPAR---- 65 PGSPG P S P PG GP GP+ P G MG FP + +P + Sbjct: 539 PGSPGGPGSDGKPGPPGSQGESGRPGPPGPSGPRGQPGVMG--FPGPKGNDGAPGKNGER 596 Query: 66 --PSGP 69 P GP Sbjct: 597 GGPGGP 602 Score = 32.7 bits (73), Expect = 0.11 Identities = 19/51 (37%), Positives = 19/51 (37%), Gaps = 1/51 (1%) Query: 18 PGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSG 68 PG G P P GP GP G P GP GP P P P G Sbjct: 590 PGKNGERGGPGGP-GPQGPPGKNGETGPQGPPGPTGPGGDKGDTGPPGPQG 639 Score = 31.6 bits (70), Expect = 0.25 Identities = 20/51 (39%), Positives = 22/51 (43%), Gaps = 2/51 (3%) Query: 16 QTPGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARP 66 Q P +P P + P GP G GP P P P P P SP SP P Sbjct: 90 QPPTAPTRPPNGQGPQGPKGDPGP--PGIPGRNGDPGIPGQPGSPGSPGPP 138 Score = 31.6 bits (70), Expect = 0.25 Identities = 28/91 (30%), Positives = 32/91 (35%), Gaps = 30/91 (32%) Query: 18 PGSPGSPCSPLSPFGPG----GPIGPTS------------------------PFSPSGPM 49 PG PG P SP SP PG P GP + P P GP Sbjct: 123 PGIPGQPGSPGSPGPPGICESCPTGPQNYSPQYDSYDVKSGVAVGGLAGYPGPAGPPGPP 182 Query: 50 GPFFPVSPWSPFSPARPSGPVLPLKPSERFP 80 GP P + P SP P P +P + P Sbjct: 183 GP--PGTSGHPGSPGSPGYQGPPGEPGQAGP 211 Score = 31.6 bits (70), Expect = 0.25 Identities = 20/54 (37%), Positives = 22/54 (40%), Gaps = 4/54 (7%) Query: 18 PGSPGS--PCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGP 69 PG G P P P GPGG G T P P G G P + P +P P Sbjct: 608 PGKNGETGPQGPPGPTGPGGDKGDTGPPGPQGLQG--LPGTGGPPGENGKPGEP 659 Score = 31.6 bits (70), Expect = 0.25 Identities = 22/64 (34%), Positives = 23/64 (35%), Gaps = 5/64 (7%) Query: 17 TPGSPGSPCSPLSPFGPG-----GPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPVL 71 +PG G SP PG GP GP P SG G P P PA G Sbjct: 1027 SPGGKGDRGENGSPGAPGAPGHPGPPGPVGPAGKSGDRGESGPAGPAGAPGPAGSRGAPG 1086 Query: 72 PLKP 75 P P Sbjct: 1087 PQGP 1090 Score = 31.2 bits (69), Expect = 0.33 Identities = 19/42 (45%), Positives = 19/42 (45%), Gaps = 2/42 (4%) Query: 18 PGSPGSPCSPLSPFGPG--GPIGPTSPFSPSGPMGPFFPVSP 57 PG PG P SP GPG G GP SG GP P P Sbjct: 530 PGGPGMRGMPGSPGGPGSDGKPGPPGSQGESGRPGPPGPSGP 571 Score = 30.8 bits (68), Expect = 0.43 Identities = 20/56 (35%), Positives = 24/56 (42%), Gaps = 8/56 (14%) Query: 26 SPLSPFG------PGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPVLPLKP 75 +P PFG P P PT P + GP GP P P P R P +P +P Sbjct: 76 NPEIPFGECCAVCPQPPTAPTRPPNGQGPQGP--KGDPGPPGIPGRNGDPGIPGQP 129 Score = 30.8 bits (68), Expect = 0.43 Identities = 17/38 (44%), Positives = 17/38 (44%), Gaps = 5/38 (13%) Query: 19 GSPGSPCSPLSPFGPG-----GPIGPTSPFSPSGPMGP 51 GSPG P GPG G GP P P GP GP Sbjct: 735 GSPGPKGDKGEPGGPGADGVPGKDGPRGPTGPIGPPGP 772 Score = 29.6 bits (65), Expect = 0.96 Identities = 23/65 (35%), Positives = 25/65 (38%), Gaps = 8/65 (12%) Query: 18 PGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPV-------SPWSPFSPARPSGPV 70 PG G +P G GGP G P SGP GP P SP P + P Sbjct: 821 PGGKGERGAP-GEKGEGGPPGVAGPPGGSGPAGPPGPQGVKGERGSPGGPGAAGFPGARG 879 Query: 71 LPLKP 75 LP P Sbjct: 880 LPGPP 884 Score = 29.6 bits (65), Expect = 0.96 Identities = 22/57 (38%), Positives = 23/57 (40%), Gaps = 2/57 (3%) Query: 18 PGSPGSPCSPLSPFGPGGPIGPTSPFSPSGP--MGPFFPVSPWSPFSPARPSGPVLP 72 PGS G P SP G G SP +P P GP PV P SGP P Sbjct: 1016 PGSDGLPGRDGSPGGKGDRGENGSPGAPGAPGHPGPPGPVGPAGKSGDRGESGPAGP 1072 Score = 29.3 bits (64), Expect = 1.3 Identities = 21/52 (40%), Positives = 24/52 (46%), Gaps = 10/52 (19%) Query: 18 PGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGP 69 PG PGS +P GP GP G P GP G + +P SP SGP Sbjct: 881 PGPPGSNGNP----GPPGPSGSPGKDGPPGPAG-----NTGAPGSPG-VSGP 922 Score = 28.1 bits (61), Expect = 2.8 Identities = 21/58 (36%), Positives = 22/58 (37%), Gaps = 8/58 (13%) Query: 19 GSPGSPCSPLSPFG-------PGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGP 69 G+PG P P G PGGP P SP GP P P S RP P Sbjct: 510 GAPG-PAGPRGAAGEPGRDGVPGGPGMRGMPGSPGGPGSDGKPGPPGSQGESGRPGPP 566 Score = 28.1 bits (61), Expect = 2.8 Identities = 14/38 (36%), Positives = 14/38 (36%) Query: 13 PHLQTPGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMG 50 P Q P P P GP GP G P GP G Sbjct: 602 PGPQGPPGKNGETGPQGPPGPTGPGGDKGDTGPPGPQG 639 Score = 28.1 bits (61), Expect = 2.8 Identities = 22/77 (28%), Positives = 27/77 (35%), Gaps = 18/77 (23%) Query: 18 PGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPF-------FPVSPWSPFSPA------ 64 P P P G GP GP +G G FP +P +P SP Sbjct: 1069 PAGPAGAPGPAGSRGAPGPQGPRGDKGETGERGAAGIKGHRGFPGNPGAPGSPGPAGQQG 1128 Query: 65 -----RPSGPVLPLKPS 76 P+GP P+ PS Sbjct: 1129 AIGSPGPAGPRGPVGPS 1145 Score = 27.7 bits (60), Expect = 3.7 Identities = 19/50 (38%), Positives = 20/50 (40%), Gaps = 1/50 (2%) Query: 19 GSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSG 68 G+PGS P PGG SP P P P P P PA SG Sbjct: 1014 GNPGSDGLPGRDGSPGGKGDRGENGSPGAPGAPGHP-GPPGPVGPAGKSG 1062 Score = 27.3 bits (59), Expect = 4.8 Identities = 15/34 (44%), Positives = 17/34 (50%), Gaps = 1/34 (2%) Query: 18 PGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGP 51 PG+ G P P S PG P GP+ GP GP Sbjct: 875 PGARGLPGPPGSNGNPGPP-GPSGSPGKDGPPGP 907 Score = 26.9 bits (58), Expect = 6.2 Identities = 17/38 (44%), Positives = 17/38 (44%), Gaps = 4/38 (10%) Query: 18 PGSPGSPCSPLSPFGPGGPIGPTSPFSP----SGPMGP 51 PG PG P P PG P P SP P S P GP Sbjct: 111 PGPPGIPGRNGDPGIPGQPGSPGSPGPPGICESCPTGP 148 Score = 26.9 bits (58), Expect = 6.2 Identities = 19/67 (28%), Positives = 21/67 (31%), Gaps = 10/67 (14%) Query: 13 PHLQTPGSPGSPCSPLSPFGPGGPIGPTSPFS----------PSGPMGPFFPVSPWSPFS 62 P + P P P G G GP P P GP P SP P S Sbjct: 488 PGFRGPAGPNGIPGEKGPAGERGAPGPAGPRGAAGEPGRDGVPGGPGMRGMPGSPGGPGS 547 Query: 63 PARPSGP 69 +P P Sbjct: 548 DGKPGPP 554 Score = 26.6 bits (57), Expect = 8.2 Identities = 19/51 (37%), Positives = 20/51 (39%), Gaps = 1/51 (1%) Query: 18 PGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSG 68 PG G P P PG P GP S P GP G P P+ P G Sbjct: 524 PGRDGVPGGPGMRGMPGSPGGPGSDGKP-GPPGSQGESGRPGPPGPSGPRG 573 >gi|169207799 PREDICTED: hypothetical protein [Homo sapiens] Length = 140 Score = 40.0 bits (92), Expect = 7e-04 Identities = 36/94 (38%), Positives = 39/94 (41%), Gaps = 20/94 (21%) Query: 2 PTEKADLSTMLPHLQTPGSPGSPCSPLSPFGPGGPIGPTSP------------FSPSGPM 49 P EKADLS L TP PG+P S L P PG P P SP P Sbjct: 16 PEEKADLSPRPRFLATPRVPGTPTSQLPPRIPGPPTTRQPPRVPDHLHLSCPRASPDRPR 75 Query: 50 GPFFPVSPWS--PFSPAR------PSGPVLPLKP 75 SP + P SPAR PS P LP +P Sbjct: 76 PSCPLASPIADVPPSPARPRTAHVPSAPRLPDRP 109 >gi|119829187 alpha 1 type XVII collagen [Homo sapiens] Length = 1497 Score = 39.7 bits (91), Expect = 0.001 Identities = 24/66 (36%), Positives = 26/66 (39%), Gaps = 1/66 (1%) Query: 15 LQTPGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPVLPLK 74 L PG PG P + P GP G GP P G P P P P GP +P Sbjct: 817 LTVPGPPGPP-GAMGPPGPPGAPGPAGPAGLPGHQEVLNLQGPPGPPGPRGPPGPSIPGP 875 Query: 75 PSERFP 80 P R P Sbjct: 876 PGPRGP 881 Score = 37.4 bits (85), Expect = 0.005 Identities = 29/81 (35%), Positives = 31/81 (38%), Gaps = 18/81 (22%) Query: 9 STMLPHLQTPGSPGS--PCSPLSPFGPGGPI------------GPTSPFSPSGPMGPFFP 54 S+ML PG PG+ P P GP GP GP P P GP GP P Sbjct: 814 SSMLTVPGPPGPPGAMGPPGPPGAPGPAGPAGLPGHQEVLNLQGPPGPPGPRGPPGPSIP 873 Query: 55 VSPWSPFSPARPSGPVLPLKP 75 P P P G LP P Sbjct: 874 ----GPPGPRGPPGEGLPGPP 890 Score = 35.4 bits (80), Expect = 0.018 Identities = 29/75 (38%), Positives = 29/75 (38%), Gaps = 20/75 (26%) Query: 18 PGSPGSPCSPLS--------PFGPGGPIGPTSPFSPSGPMG-------PFFPVSPWSPF- 61 PG PG P S LS P GP GP GP P GP G P F S S F Sbjct: 887 PGPPGPPGSFLSNSETFLSGPPGPPGPPGPKGDQGPPGPRGHQGEQGLPGFSTSGSSSFG 946 Query: 62 ----SPARPSGPVLP 72 P P GP P Sbjct: 947 LNLQGPPGPPGPQGP 961 Score = 33.9 bits (76), Expect = 0.051 Identities = 24/63 (38%), Positives = 25/63 (39%), Gaps = 4/63 (6%) Query: 14 HLQTPGSPGSPCSPLSPF--GPGGPIGPTSPF--SPSGPMGPFFPVSPWSPFSPARPSGP 69 +LQ P P P P P GP GP GP P GP G F S P P GP Sbjct: 854 NLQGPPGPPGPRGPPGPSIPGPPGPRGPPGEGLPGPPGPPGSFLSNSETFLSGPPGPPGP 913 Query: 70 VLP 72 P Sbjct: 914 PGP 916 Score = 32.7 bits (73), Expect = 0.11 Identities = 19/52 (36%), Positives = 21/52 (40%), Gaps = 1/52 (1%) Query: 18 PGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGP 69 PG+PG P PL GP GP G G GP P P +GP Sbjct: 587 PGTPGIP-GPLGHPGPQGPKGQKGSVGDPGMEGPMGQRGREGPMGPRGEAGP 637 Score = 31.2 bits (69), Expect = 0.33 Identities = 20/52 (38%), Positives = 20/52 (38%), Gaps = 1/52 (1%) Query: 17 TPGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSG 68 TPG PG P P GP G G GPMG P P A P G Sbjct: 589 TPGIPG-PLGHPGPQGPKGQKGSVGDPGMEGPMGQRGREGPMGPRGEAGPPG 639 Score = 30.4 bits (67), Expect = 0.57 Identities = 23/59 (38%), Positives = 23/59 (38%), Gaps = 9/59 (15%) Query: 18 PGSPGSPCSPLSPFGPG--GPIGPTSPFSP------SGPMGPFFPVSPWSPFSPARPSG 68 P PG P P P G G GP GP F SGP GP P P P P G Sbjct: 870 PSIPGPP-GPRGPPGEGLPGPPGPPGSFLSNSETFLSGPPGPPGPPGPKGDQGPPGPRG 927 Score = 28.1 bits (61), Expect = 2.8 Identities = 15/37 (40%), Positives = 17/37 (45%), Gaps = 1/37 (2%) Query: 19 GSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPV 55 G+ G P P P G G +GP GP GP PV Sbjct: 647 GAAGEP-GPHGPPGVPGSVGPKGSSGSPGPQGPPGPV 682 Score = 27.3 bits (59), Expect = 4.8 Identities = 15/33 (45%), Positives = 16/33 (48%), Gaps = 1/33 (3%) Query: 18 PGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMG 50 PG G P P S GP G G P P GP+G Sbjct: 652 PGPHGPPGVPGS-VGPKGSSGSPGPQGPPGPVG 683 Score = 26.9 bits (58), Expect = 6.2 Identities = 14/33 (42%), Positives = 15/33 (45%), Gaps = 1/33 (3%) Query: 18 PGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMG 50 PG G +P P G GP GP P GP G Sbjct: 1440 PGQKGEMGTP-GPKGDRGPAGPPGHPGPPGPRG 1471 Score = 26.6 bits (57), Expect = 8.2 Identities = 21/61 (34%), Positives = 22/61 (36%), Gaps = 13/61 (21%) Query: 14 HLQTPGSPGSPCSPLSPFG-----PGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSG 68 H G PG S S FG P GP GP P G P P + PSG Sbjct: 928 HQGEQGLPGFSTSGSSSFGLNLQGPPGPPGPQGPKGDKG--------DPGVPGALGIPSG 979 Query: 69 P 69 P Sbjct: 980 P 980 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.318 0.139 0.477 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 8,545,585 Number of Sequences: 37866 Number of extensions: 546480 Number of successful extensions: 10188 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 266 Number of HSP's successfully gapped in prelim test: 406 Number of HSP's that attempted gapping in prelim test: 3222 Number of HSP's gapped (non-prelim): 4463 length of query: 148 length of database: 18,247,518 effective HSP length: 93 effective length of query: 55 effective length of database: 14,725,980 effective search space: 809928900 effective search space used: 809928900 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.