Guide to the Human Genome
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Search of human proteins with 239753818

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239753818 PREDICTED: hypothetical protein [Homo sapiens]
         (148 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239753818 PREDICTED: hypothetical protein [Homo sapiens]           327   2e-90
gi|239748381 PREDICTED: hypothetical protein XP_002346646 [Homo ...   327   2e-90
gi|239742309 PREDICTED: hypothetical protein XP_002342482 [Homo ...   327   2e-90
gi|239755972 PREDICTED: similar to prostate collagen triple heli...    67   5e-12
gi|239750495 PREDICTED: similar to prostate collagen triple heli...    67   5e-12
gi|239744792 PREDICTED: hypothetical protein XP_002343272 [Homo ...    67   5e-12
gi|209447093 prostate collagen triple helix isoform 2 [Homo sapi...    67   5e-12
gi|62234340 prostate collagen triple helix isoform 1 [Homo sapiens]    67   5e-12
gi|16753207 ubiquilin 2 [Homo sapiens]                                 50   7e-07
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]      47   8e-06
gi|17402900 far upstream element-binding protein [Homo sapiens]        46   1e-05
gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Ho...    45   3e-05
gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Ho...    45   3e-05
gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Ho...    45   3e-05
gi|34365793 WNK lysine deficient protein kinase 4 [Homo sapiens]       44   6e-05
gi|162138911 IQ motif and Sec7 domain 2 isoform1 [Homo sapiens]        42   1e-04
gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]       42   2e-04
gi|23592228 extraembryonic, spermatogenesis, homeobox 1-like [Ho...    42   2e-04
gi|56243590 WD repeat domain 33 isoform 1 [Homo sapiens]               42   2e-04
gi|239582763 ral guanine nucleotide dissociation stimulator-like...    41   3e-04
gi|169175458 PREDICTED: similar to hCG2040468 [Homo sapiens]           41   4e-04
gi|48762934 alpha 2 type I collagen [Homo sapiens]                     40   5e-04
gi|4505939 DNA-directed RNA polymerase II A [Homo sapiens]             40   5e-04
gi|18105032 type X collagen alpha 1 precursor [Homo sapiens]           40   5e-04
gi|194248060 outer dense fiber of sperm tails 1 [Homo sapiens]         40   5e-04
gi|38570075 collagen, type XXV, alpha 1 isoform 1 [Homo sapiens]       40   5e-04
gi|38570073 collagen, type XXV, alpha 1 isoform 2 [Homo sapiens]       40   5e-04
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]      40   7e-04
gi|169207799 PREDICTED: hypothetical protein [Homo sapiens]            40   7e-04
gi|119829187 alpha 1 type XVII collagen [Homo sapiens]                 40   0.001

>gi|239753818 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 148

 Score =  327 bits (838), Expect = 2e-90
 Identities = 148/148 (100%), Positives = 148/148 (100%)

Query: 1   MPTEKADLSTMLPHLQTPGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSP 60
           MPTEKADLSTMLPHLQTPGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSP
Sbjct: 1   MPTEKADLSTMLPHLQTPGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSP 60

Query: 61  FSPARPSGPVLPLKPSERFPFHLSLLSCRLYHLFLEGRCDHGAQGNHLLQGALEVQASQE 120
           FSPARPSGPVLPLKPSERFPFHLSLLSCRLYHLFLEGRCDHGAQGNHLLQGALEVQASQE
Sbjct: 61  FSPARPSGPVLPLKPSERFPFHLSLLSCRLYHLFLEGRCDHGAQGNHLLQGALEVQASQE 120

Query: 121 CCRYTWGSSSLLSTDYPGVVHWHKWQNL 148
           CCRYTWGSSSLLSTDYPGVVHWHKWQNL
Sbjct: 121 CCRYTWGSSSLLSTDYPGVVHWHKWQNL 148


>gi|239748381 PREDICTED: hypothetical protein XP_002346646 [Homo
           sapiens]
          Length = 148

 Score =  327 bits (838), Expect = 2e-90
 Identities = 148/148 (100%), Positives = 148/148 (100%)

Query: 1   MPTEKADLSTMLPHLQTPGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSP 60
           MPTEKADLSTMLPHLQTPGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSP
Sbjct: 1   MPTEKADLSTMLPHLQTPGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSP 60

Query: 61  FSPARPSGPVLPLKPSERFPFHLSLLSCRLYHLFLEGRCDHGAQGNHLLQGALEVQASQE 120
           FSPARPSGPVLPLKPSERFPFHLSLLSCRLYHLFLEGRCDHGAQGNHLLQGALEVQASQE
Sbjct: 61  FSPARPSGPVLPLKPSERFPFHLSLLSCRLYHLFLEGRCDHGAQGNHLLQGALEVQASQE 120

Query: 121 CCRYTWGSSSLLSTDYPGVVHWHKWQNL 148
           CCRYTWGSSSLLSTDYPGVVHWHKWQNL
Sbjct: 121 CCRYTWGSSSLLSTDYPGVVHWHKWQNL 148


>gi|239742309 PREDICTED: hypothetical protein XP_002342482 [Homo
           sapiens]
          Length = 148

 Score =  327 bits (838), Expect = 2e-90
 Identities = 148/148 (100%), Positives = 148/148 (100%)

Query: 1   MPTEKADLSTMLPHLQTPGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSP 60
           MPTEKADLSTMLPHLQTPGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSP
Sbjct: 1   MPTEKADLSTMLPHLQTPGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSP 60

Query: 61  FSPARPSGPVLPLKPSERFPFHLSLLSCRLYHLFLEGRCDHGAQGNHLLQGALEVQASQE 120
           FSPARPSGPVLPLKPSERFPFHLSLLSCRLYHLFLEGRCDHGAQGNHLLQGALEVQASQE
Sbjct: 61  FSPARPSGPVLPLKPSERFPFHLSLLSCRLYHLFLEGRCDHGAQGNHLLQGALEVQASQE 120

Query: 121 CCRYTWGSSSLLSTDYPGVVHWHKWQNL 148
           CCRYTWGSSSLLSTDYPGVVHWHKWQNL
Sbjct: 121 CCRYTWGSSSLLSTDYPGVVHWHKWQNL 148


>gi|239755972 PREDICTED: similar to prostate collagen triple helix
           [Homo sapiens]
          Length = 116

 Score = 67.0 bits (162), Expect = 5e-12
 Identities = 29/57 (50%), Positives = 31/57 (54%)

Query: 16  QTPGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPVLP 72
           +TPGSP  P  P SP GPG PIGP  P  P GP GP  P+ P  P  P  P  P  P
Sbjct: 60  RTPGSPWGPVGPASPLGPGFPIGPMGPGKPVGPKGPMLPLGPSGPVGPTSPLFPFCP 116



 Score = 65.1 bits (157), Expect = 2e-11
 Identities = 37/80 (46%), Positives = 42/80 (52%), Gaps = 7/80 (8%)

Query: 5   KADLSTMLPHLQTPGSPGSPCSPLSPFGPGGPIGPTSPFSPS---GPMGPFFPVSPWSPF 61
           K  +S + P   +P SP  P  P +P  P GP+GP SP  P    GPMGP  PV P  P 
Sbjct: 39  KTRVSPIFPF--SPRSPFQPLIPRTPGSPWGPVGPASPLGPGFPIGPMGPGKPVGPKGPM 96

Query: 62  SPARPSGPVLPLKPSERFPF 81
            P  PSGPV P  P   FPF
Sbjct: 97  LPLGPSGPVGPTSP--LFPF 114


>gi|239750495 PREDICTED: similar to prostate collagen triple helix
           [Homo sapiens]
          Length = 116

 Score = 67.0 bits (162), Expect = 5e-12
 Identities = 29/57 (50%), Positives = 31/57 (54%)

Query: 16  QTPGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPVLP 72
           +TPGSP  P  P SP GPG PIGP  P  P GP GP  P+ P  P  P  P  P  P
Sbjct: 60  RTPGSPWGPVGPASPLGPGFPIGPMGPGKPVGPKGPMLPLGPSGPVGPTSPLFPFCP 116



 Score = 65.1 bits (157), Expect = 2e-11
 Identities = 37/80 (46%), Positives = 42/80 (52%), Gaps = 7/80 (8%)

Query: 5   KADLSTMLPHLQTPGSPGSPCSPLSPFGPGGPIGPTSPFSPS---GPMGPFFPVSPWSPF 61
           K  +S + P   +P SP  P  P +P  P GP+GP SP  P    GPMGP  PV P  P 
Sbjct: 39  KTRVSPIFPF--SPRSPFQPLIPRTPGSPWGPVGPASPLGPGFPIGPMGPGKPVGPKGPM 96

Query: 62  SPARPSGPVLPLKPSERFPF 81
            P  PSGPV P  P   FPF
Sbjct: 97  LPLGPSGPVGPTSP--LFPF 114


>gi|239744792 PREDICTED: hypothetical protein XP_002343272 [Homo
           sapiens]
          Length = 116

 Score = 67.0 bits (162), Expect = 5e-12
 Identities = 29/57 (50%), Positives = 31/57 (54%)

Query: 16  QTPGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPVLP 72
           +TPGSP  P  P SP GPG PIGP  P  P GP GP  P+ P  P  P  P  P  P
Sbjct: 60  RTPGSPWGPVGPASPLGPGFPIGPMGPGKPVGPKGPMLPLGPSGPVGPTSPLFPFCP 116



 Score = 65.1 bits (157), Expect = 2e-11
 Identities = 37/80 (46%), Positives = 42/80 (52%), Gaps = 7/80 (8%)

Query: 5   KADLSTMLPHLQTPGSPGSPCSPLSPFGPGGPIGPTSPFSPS---GPMGPFFPVSPWSPF 61
           K  +S + P   +P SP  P  P +P  P GP+GP SP  P    GPMGP  PV P  P 
Sbjct: 39  KTRVSPIFPF--SPRSPFQPLIPRTPGSPWGPVGPASPLGPGFPIGPMGPGKPVGPKGPM 96

Query: 62  SPARPSGPVLPLKPSERFPF 81
            P  PSGPV P  P   FPF
Sbjct: 97  LPLGPSGPVGPTSP--LFPF 114


>gi|209447093 prostate collagen triple helix isoform 2 [Homo
           sapiens]
          Length = 116

 Score = 67.0 bits (162), Expect = 5e-12
 Identities = 29/57 (50%), Positives = 31/57 (54%)

Query: 16  QTPGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPVLP 72
           +TPGSP  P  P SP GPG PIGP  P  P GP GP  P+ P  P  P  P  P  P
Sbjct: 60  RTPGSPWGPVGPASPLGPGFPIGPMGPGKPVGPKGPMLPLGPSGPVGPTSPLFPFCP 116



 Score = 65.1 bits (157), Expect = 2e-11
 Identities = 37/80 (46%), Positives = 42/80 (52%), Gaps = 7/80 (8%)

Query: 5   KADLSTMLPHLQTPGSPGSPCSPLSPFGPGGPIGPTSPFSPS---GPMGPFFPVSPWSPF 61
           K  +S + P   +P SP  P  P +P  P GP+GP SP  P    GPMGP  PV P  P 
Sbjct: 39  KTRVSPIFPF--SPRSPFQPLIPRTPGSPWGPVGPASPLGPGFPIGPMGPGKPVGPKGPM 96

Query: 62  SPARPSGPVLPLKPSERFPF 81
            P  PSGPV P  P   FPF
Sbjct: 97  LPLGPSGPVGPTSP--LFPF 114


>gi|62234340 prostate collagen triple helix isoform 1 [Homo sapiens]
          Length = 107

 Score = 67.0 bits (162), Expect = 5e-12
 Identities = 29/57 (50%), Positives = 31/57 (54%)

Query: 16  QTPGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPVLP 72
           +TPGSP  P  P SP GPG PIGP  P  P GP GP  P+ P  P  P  P  P  P
Sbjct: 51  RTPGSPWGPVGPASPLGPGFPIGPMGPGKPVGPKGPMLPLGPSGPVGPTSPLFPFCP 107



 Score = 65.1 bits (157), Expect = 2e-11
 Identities = 37/80 (46%), Positives = 42/80 (52%), Gaps = 7/80 (8%)

Query: 5   KADLSTMLPHLQTPGSPGSPCSPLSPFGPGGPIGPTSPFSPS---GPMGPFFPVSPWSPF 61
           K  +S + P   +P SP  P  P +P  P GP+GP SP  P    GPMGP  PV P  P 
Sbjct: 30  KTRVSPIFPF--SPRSPFQPLIPRTPGSPWGPVGPASPLGPGFPIGPMGPGKPVGPKGPM 87

Query: 62  SPARPSGPVLPLKPSERFPF 81
            P  PSGPV P  P   FPF
Sbjct: 88  LPLGPSGPVGPTSP--LFPF 105


>gi|16753207 ubiquilin 2 [Homo sapiens]
          Length = 624

 Score = 50.1 bits (118), Expect = 7e-07
 Identities = 23/54 (42%), Positives = 28/54 (51%)

Query: 19  GSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPVLP 72
           G  G+   P+ P  P GPIGP  PF+P GP+GP  P  P +P       GP  P
Sbjct: 483 GVLGTAIGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGP 536



 Score = 49.3 bits (116), Expect = 1e-06
 Identities = 25/60 (41%), Positives = 32/60 (53%), Gaps = 1/60 (1%)

Query: 19  GSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGP-VLPLKPSE 77
           G+   P  P++P GP GPI P +P  P GP+GP  P +P        P+GP V    PSE
Sbjct: 486 GTAIGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSE 545



 Score = 49.3 bits (116), Expect = 1e-06
 Identities = 25/64 (39%), Positives = 33/64 (51%), Gaps = 1/64 (1%)

Query: 17  TPGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPW-SPFSPARPSGPVLPLKP 75
           TP  P  P  P +P GP GPIGPT P +P G  G   P  P  S  +P+  + P     P
Sbjct: 496 TPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSETTSPTSESGP 555

Query: 76  SERF 79
           +++F
Sbjct: 556 NQQF 559


>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
          Length = 1464

 Score = 46.6 bits (109), Expect = 8e-06
 Identities = 23/52 (44%), Positives = 28/52 (53%), Gaps = 4/52 (7%)

Query: 18   PGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGP 69
            PG+PG+P +P    GP GP G +     +GP GP  PV P     PA P GP
Sbjct: 1045 PGAPGAPGAP----GPVGPAGKSGDRGETGPAGPAGPVGPVGARGPAGPQGP 1092



 Score = 43.9 bits (102), Expect = 5e-05
 Identities = 21/51 (41%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 18   PGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSG 68
            PG+PG+P  P+ P G  G  G T P  P+GP+GP     P  P  P    G
Sbjct: 1048 PGAPGAP-GPVGPAGKSGDRGETGPAGPAGPVGPVGARGPAGPQGPRGDKG 1097



 Score = 40.0 bits (92), Expect = 7e-04
 Identities = 29/81 (35%), Positives = 29/81 (35%), Gaps = 19/81 (23%)

Query: 18   PGSPGSPCS--PLSPFGPGGPIGPTS---------------PFSPSGPMGPFFPVSPWSP 60
            PG PGSP    P    GP GP GP                 P  P GP G      P  P
Sbjct: 1120 PGPPGSPGEQGPSGASGPAGPRGPPGSAGAPGKDGLNGLPGPIGPPGPRGRTGDAGPVGP 1179

Query: 61   FSPARPSGPVLPLKPSERFPF 81
              P  P GP  P  PS  F F
Sbjct: 1180 PGPPGPPGP--PGPPSAGFDF 1198



 Score = 37.0 bits (84), Expect = 0.006
 Identities = 26/65 (40%), Positives = 32/65 (49%), Gaps = 10/65 (15%)

Query: 18   PGSPGSPCSPLSP--------FGPGGPIG-PTSPFSPSGPMGPFFPVSPWSPFSPARPSG 68
            PG+ GSP    SP         GP GP G P +P +P GP+GP           PA P+G
Sbjct: 1018 PGAEGSPGRDGSPGAKGDRGETGPAGPPGAPGAPGAP-GPVGPAGKSGDRGETGPAGPAG 1076

Query: 69   PVLPL 73
            PV P+
Sbjct: 1077 PVGPV 1081



 Score = 35.4 bits (80), Expect = 0.018
 Identities = 24/60 (40%), Positives = 25/60 (41%), Gaps = 8/60 (13%)

Query: 19   GSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPVLPLKPSER 78
            G PG P  P  P G  G  GP  P  P GP GP  P S    FS        LP  P E+
Sbjct: 1157 GLPG-PIGPPGPRGRTGDAGPVGPPGPPGPPGPPGPPSAGFDFS-------FLPQPPQEK 1208



 Score = 32.7 bits (73), Expect = 0.11
 Identities = 19/54 (35%), Positives = 20/54 (37%), Gaps = 2/54 (3%)

Query: 18  PGSPG--SPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGP 69
           PG+ G   P  P    GP GP GP       GP G   P        P  P GP
Sbjct: 877 PGAAGRVGPPGPSGNAGPPGPPGPAGKEGGKGPRGETGPAGRPGEVGPPGPPGP 930



 Score = 32.0 bits (71), Expect = 0.19
 Identities = 18/51 (35%), Positives = 19/51 (37%)

Query: 18  PGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSG 68
           P  P     P  P GP G  G   P   +GP G    V P  P  PA   G
Sbjct: 885 PPGPSGNAGPPGPPGPAGKEGGKGPRGETGPAGRPGEVGPPGPPGPAGEKG 935



 Score = 31.6 bits (70), Expect = 0.25
 Identities = 24/72 (33%), Positives = 26/72 (36%), Gaps = 17/72 (23%)

Query: 18  PGS--PGSPCSPLSPFGPG-----------GPIGPTSPFSPSGPMGP----FFPVSPWSP 60
           PG+  P   C P+ P G             GP G T P  P GP GP      P  P  P
Sbjct: 82  PGAEVPEGECCPVCPDGSESPTDQETTGVEGPKGDTGPRGPRGPAGPPGRDGIPGQPGLP 141

Query: 61  FSPARPSGPVLP 72
             P  P  P  P
Sbjct: 142 GPPGPPGPPGPP 153



 Score = 31.6 bits (70), Expect = 0.25
 Identities = 20/60 (33%), Positives = 21/60 (35%), Gaps = 5/60 (8%)

Query: 18  PGSPGSP-----CSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPVLP 72
           PG+ G P       P  P G  GP GP  P    G  GP     P        P GP  P
Sbjct: 871 PGATGFPGAAGRVGPPGPSGNAGPPGPPGPAGKEGGKGPRGETGPAGRPGEVGPPGPPGP 930



 Score = 31.2 bits (69), Expect = 0.33
 Identities = 16/38 (42%), Positives = 17/38 (44%), Gaps = 5/38 (13%)

Query: 19  GSPGSP-----CSPLSPFGPGGPIGPTSPFSPSGPMGP 51
           GSPG         P+ P GP G  G      PSGP GP
Sbjct: 755 GSPGKDGVRGLTGPIGPPGPAGAPGDKGESGPSGPAGP 792



 Score = 30.8 bits (68), Expect = 0.43
 Identities = 12/30 (40%), Positives = 13/30 (43%)

Query: 21   PGSPCSPLSPFGPGGPIGPTSPFSPSGPMG 50
            P  P  P+ P G  GP GP  P    G  G
Sbjct: 1071 PAGPAGPVGPVGARGPAGPQGPRGDKGETG 1100



 Score = 30.4 bits (67), Expect = 0.57
 Identities = 14/33 (42%), Positives = 16/33 (48%), Gaps = 1/33 (3%)

Query: 18  PGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMG 50
           PG+ G P       G  GP GP  P  P GP+G
Sbjct: 823 PGAKGEP-GDAGAKGDAGPPGPAGPAGPPGPIG 854



 Score = 30.4 bits (67), Expect = 0.57
 Identities = 22/74 (29%), Positives = 25/74 (33%), Gaps = 17/74 (22%)

Query: 18   PGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMG----------------PFFPVSPWSPF 61
            P  P  P  P+   GP GP GP      +G  G                P  P SP    
Sbjct: 1071 PAGPAGPVGPVGARGPAGPQGPRGDKGETGEQGDRGIKGHRGFSGLQGPPGPPGSPGEQ- 1129

Query: 62   SPARPSGPVLPLKP 75
             P+  SGP  P  P
Sbjct: 1130 GPSGASGPAGPRGP 1143



 Score = 30.0 bits (66), Expect = 0.74
 Identities = 23/67 (34%), Positives = 25/67 (37%), Gaps = 16/67 (23%)

Query: 30  PFGPGGPIGPTSPFSPSGPMG----PFFPVSPWS--PFSPARPSGPV----------LPL 73
           P GP GP G   P    GP G    P  P  P +  P  P  P GP            P 
Sbjct: 180 PMGPSGPRGLPGPPGAPGPQGFQGPPGEPGEPGASGPMGPRGPPGPPGKNGDDGEAGKPG 239

Query: 74  KPSERFP 80
           +P ER P
Sbjct: 240 RPGERGP 246



 Score = 30.0 bits (66), Expect = 0.74
 Identities = 23/59 (38%), Positives = 26/59 (44%), Gaps = 8/59 (13%)

Query: 18  PGSPGS--PCSPLSPFGPGGPIG----PTSPFS--PSGPMGPFFPVSPWSPFSPARPSG 68
           PG PG+  P  P  P GP GP G    P +P S   +G  G   PV    P  PA   G
Sbjct: 409 PGFPGARGPSGPQGPGGPPGPKGNSGEPGAPGSKGDTGAKGEPGPVGVQGPPGPAGEEG 467



 Score = 30.0 bits (66), Expect = 0.74
 Identities = 16/34 (47%), Positives = 17/34 (50%), Gaps = 1/34 (2%)

Query: 18  PGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGP 51
           PG+ G   SP SP GP G  GP  P    G  GP
Sbjct: 535 PGAKGLTGSPGSP-GPDGKTGPPGPAGQDGRPGP 567



 Score = 30.0 bits (66), Expect = 0.74
 Identities = 16/33 (48%), Positives = 16/33 (48%), Gaps = 4/33 (12%)

Query: 19  GSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGP 51
           GSPGSP     P G  GP GP       GP GP
Sbjct: 542 GSPGSP----GPDGKTGPPGPAGQDGRPGPPGP 570



 Score = 30.0 bits (66), Expect = 0.74
 Identities = 20/56 (35%), Positives = 20/56 (35%), Gaps = 2/56 (3%)

Query: 15   LQTPGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVS--PWSPFSPARPSG 68
            L  P  P  P       GP GP GP  P  P GP    F  S  P  P   A   G
Sbjct: 1158 LPGPIGPPGPRGRTGDAGPVGPPGPPGPPGPPGPPSAGFDFSFLPQPPQEKAHDGG 1213



 Score = 29.6 bits (65), Expect = 0.96
 Identities = 18/52 (34%), Positives = 19/52 (36%), Gaps = 1/52 (1%)

Query: 19  GSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPV 70
           G PG P  P    GP G  G        G  G      P  P  PA P GP+
Sbjct: 803 GEPGPP-GPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGPAGPAGPPGPI 853



 Score = 29.3 bits (64), Expect = 1.3
 Identities = 28/85 (32%), Positives = 30/85 (35%), Gaps = 27/85 (31%)

Query: 18  PGSPGSPCSPLSPFGPG------------------GPIGPTSPFSPSGPMG-PFFPVSP- 57
           PG PG P  P  P  PG                  G I    P  PSGP G P  P +P 
Sbjct: 138 PGLPGPPGPPGPPGPPGLGGNFAPQLSYGYDEKSTGGISVPGPMGPSGPRGLPGPPGAPG 197

Query: 58  -----WSPFSPARP--SGPVLPLKP 75
                  P  P  P  SGP+ P  P
Sbjct: 198 PQGFQGPPGEPGEPGASGPMGPRGP 222



 Score = 29.3 bits (64), Expect = 1.3
 Identities = 23/63 (36%), Positives = 24/63 (38%), Gaps = 10/63 (15%)

Query: 19  GSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGP----FFP-----VSPWSPFSPARPSGP 69
           G PG P  P  P GP G +G        G  GP     FP     V P  P   A P GP
Sbjct: 839 GPPG-PAGPAGPPGPIGNVGAPGAKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGP 897

Query: 70  VLP 72
             P
Sbjct: 898 PGP 900



 Score = 28.9 bits (63), Expect = 1.6
 Identities = 18/54 (33%), Positives = 20/54 (37%), Gaps = 1/54 (1%)

Query: 19  GSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPVLP 72
           G PG P  P  P G  G +G      P GP G   P        P  P+G   P
Sbjct: 332 GPPG-PTGPAGPPGFPGAVGAKGEAGPQGPRGSEGPQGVRGEPGPPGPAGAAGP 384



 Score = 28.9 bits (63), Expect = 1.6
 Identities = 19/56 (33%), Positives = 21/56 (37%), Gaps = 1/56 (1%)

Query: 18  PGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPVLPL 73
           PG  G P  P  P G  GP G        G  G         P  PA P+GP  P+
Sbjct: 799 PGDRGEP-GPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGPAGPAGPPGPI 853



 Score = 28.9 bits (63), Expect = 1.6
 Identities = 18/51 (35%), Positives = 19/51 (37%), Gaps = 1/51 (1%)

Query: 19  GSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGP 69
           G PG P  P    G  GP G T P    G +GP  P  P          GP
Sbjct: 893 GPPGPP-GPAGKEGGKGPRGETGPAGRPGEVGPPGPPGPAGEKGSPGADGP 942



 Score = 28.5 bits (62), Expect = 2.1
 Identities = 18/50 (36%), Positives = 20/50 (40%), Gaps = 7/50 (14%)

Query: 19  GSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSG 68
           G+ GSP       G  G  G T P  P GP G         P  PA P+G
Sbjct: 752 GADGSP-------GKDGVRGLTGPIGPPGPAGAPGDKGESGPSGPAGPTG 794



 Score = 28.5 bits (62), Expect = 2.1
 Identities = 19/51 (37%), Positives = 20/51 (39%), Gaps = 1/51 (1%)

Query: 18   PGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSG 68
            PG  G    P  P GP G  G   P   SG  GP  P+ P     P   SG
Sbjct: 964  PGQRGERGFPGLP-GPSGEPGKQGPSGASGERGPPGPMGPPGLAGPPGESG 1013



 Score = 28.1 bits (61), Expect = 2.8
 Identities = 18/54 (33%), Positives = 22/54 (40%), Gaps = 2/54 (3%)

Query: 18  PGSPGSPCSP--LSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGP 69
           PGSPG   +P  + P G  G  G      P+G  G         P  P  P+GP
Sbjct: 289 PGSPGENGAPGQMGPRGLPGERGRPGAPGPAGARGNDGATGAAGPPGPTGPAGP 342



 Score = 27.7 bits (60), Expect = 3.7
 Identities = 18/54 (33%), Positives = 21/54 (38%), Gaps = 2/54 (3%)

Query: 18  PGSPGSPCSPLSP--FGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGP 69
           PG+PG   +  +    G  GP GPT P  P G  G         P  P    GP
Sbjct: 313 PGAPGPAGARGNDGATGAAGPPGPTGPAGPPGFPGAVGAKGEAGPQGPRGSEGP 366



 Score = 27.7 bits (60), Expect = 3.7
 Identities = 20/55 (36%), Positives = 22/55 (40%), Gaps = 9/55 (16%)

Query: 18  PGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPVLP 72
           PGS G P +     GP GP G      P+GP G        SP    RP    LP
Sbjct: 490 PGSRGFPGAD-GVAGPKGPAGERGSPGPAGPKG--------SPGEAGRPGEAGLP 535



 Score = 27.3 bits (59), Expect = 4.8
 Identities = 16/51 (31%), Positives = 19/51 (37%), Gaps = 4/51 (7%)

Query: 18  PGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSG 68
           PG  G    P    GP G +GP      +G  GP  P  P        P+G
Sbjct: 592 PGKAGERGVP----GPPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAG 638



 Score = 26.6 bits (57), Expect = 8.2
 Identities = 18/49 (36%), Positives = 19/49 (38%), Gaps = 6/49 (12%)

Query: 21  PGSPCSPLSPFGPGGPIG----PTSPF--SPSGPMGPFFPVSPWSPFSP 63
           P     P  P GP GP G    P  P    P GP GP  P      F+P
Sbjct: 113 PKGDTGPRGPRGPAGPPGRDGIPGQPGLPGPPGPPGPPGPPGLGGNFAP 161



 Score = 26.6 bits (57), Expect = 8.2
 Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 2/42 (4%)

Query: 18  PGSPGSPCSPLSPFGPGGPIGPTSPFS--PSGPMGPFFPVSP 57
           PG+ G P +  +   PG    P  P +  PSGP GP  P  P
Sbjct: 388 PGADGQPGAKGANGAPGIAGAPGFPGARGPSGPQGPGGPPGP 429



 Score = 26.6 bits (57), Expect = 8.2
 Identities = 20/64 (31%), Positives = 25/64 (39%), Gaps = 7/64 (10%)

Query: 17  TPGSPG-----SPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPVL 71
           +PGSPG      P  P    G  GP GP      +G MG  FP    +   P +     +
Sbjct: 543 SPGSPGPDGKTGPPGPAGQDGRPGPPGPPGARGQAGVMG--FPGPKGAAGEPGKAGERGV 600

Query: 72  PLKP 75
           P  P
Sbjct: 601 PGPP 604



 Score = 26.6 bits (57), Expect = 8.2
 Identities = 17/54 (31%), Positives = 17/54 (31%)

Query: 15  LQTPGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSG 68
           L  P  P  P       G  GP GP  P    G  G      P  P   A P G
Sbjct: 765 LTGPIGPPGPAGAPGDKGESGPSGPAGPTGARGAPGDRGEPGPPGPAGFAGPPG 818


>gi|17402900 far upstream element-binding protein [Homo sapiens]
          Length = 644

 Score = 46.2 bits (108), Expect = 1e-05
 Identities = 26/61 (42%), Positives = 31/61 (50%), Gaps = 5/61 (8%)

Query: 19  GSPGSPCSPLSPFGPGG---PIGPTSPFSPSGPMGPFFPVSPWSPFSPA-RPSGPVLPLK 74
           G P +P  P  P GP G   P GP  P  P  PMGP+ P +P++P  P   P GP  P  
Sbjct: 448 GGPVNPLGPPVPHGPHGVPGPHGPPGPPGPGTPMGPYNP-APYNPGPPGPAPHGPPAPYA 506

Query: 75  P 75
           P
Sbjct: 507 P 507



 Score = 33.1 bits (74), Expect = 0.087
 Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 6/49 (12%)

Query: 34  GGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPVLPLKPSERFPFH 82
           GGP+ P  P  P GP G   P     P  P  P GP  P+ P    P++
Sbjct: 448 GGPVNPLGPPVPHGPHG--VP----GPHGPPGPPGPGTPMGPYNPAPYN 490



 Score = 32.7 bits (73), Expect = 0.11
 Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 8/54 (14%)

Query: 18  PGSPGSPCSPLSPFGPG----GPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPS 67
           PG+P  P +P +P+ PG     P GP +P++P G  G  +P   W   +P  P+
Sbjct: 477 PGTPMGPYNP-APYNPGPPGPAPHGPPAPYAPQG-WGNAYP--HWQQQAPPDPA 526



 Score = 31.6 bits (70), Expect = 0.25
 Identities = 15/43 (34%), Positives = 18/43 (41%)

Query: 38  GPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPVLPLKPSERFP 80
           GP +P  P  P GP     P  P  P  P  P+ P  P+   P
Sbjct: 449 GPVNPLGPPVPHGPHGVPGPHGPPGPPGPGTPMGPYNPAPYNP 491


>gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Homo
           sapiens]
          Length = 1751

 Score = 44.7 bits (104), Expect = 3e-05
 Identities = 27/63 (42%), Positives = 30/63 (47%), Gaps = 4/63 (6%)

Query: 18  PGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPVLPLKPSE 77
           PG PG PC P+SP GP GP   T P  P GP GP  P    +P     P  P    KP +
Sbjct: 778 PGPPGLPC-PVSPLGPAGPALQTVP-GPQGPPGP--PGRDGTPGRDGEPGDPGEDGKPGD 833

Query: 78  RFP 80
             P
Sbjct: 834 TGP 836



 Score = 37.7 bits (86), Expect = 0.004
 Identities = 22/50 (44%), Positives = 22/50 (44%), Gaps = 8/50 (16%)

Query: 19  GSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSG 68
           G PGSPC P       GP G   P SP GP GP     P  P  P  P G
Sbjct: 770 GPPGSPCLP-------GPPGLPCPVSPLGPAGPALQTVP-GPQGPPGPPG 811



 Score = 36.2 bits (82), Expect = 0.010
 Identities = 23/72 (31%), Positives = 29/72 (40%)

Query: 19   GSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPVLPLKPSER 78
            G PG P  P  P  PG P+  ++ F+ S   GP        P  P    G V P  P  +
Sbjct: 1252 GMPGPPGPPGPPGPPGTPVYDSNVFAESSRPGPPGLPGNQGPPGPKGAKGEVGPPGPPGQ 1311

Query: 79   FPFHLSLLSCRL 90
            FPF    L   +
Sbjct: 1312 FPFDFLQLEAEM 1323



 Score = 32.3 bits (72), Expect = 0.15
 Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 1/50 (2%)

Query: 19   GSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSG 68
            G+PG   S  +P GP G  G +      GP GP  P  P  P  P  P+G
Sbjct: 977  GAPGHKGSKGAP-GPAGARGESGLAGAPGPAGPPGPPGPPGPPGPGLPAG 1025



 Score = 31.6 bits (70), Expect = 0.25
 Identities = 26/59 (44%), Positives = 26/59 (44%), Gaps = 12/59 (20%)

Query: 19  GSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPA-----RPSGPVLP 72
           G PG P  P    G  GP  P SP  P GP G   PVSP  P  PA      P GP  P
Sbjct: 758 GEPGVPGPP----GRAGP--PGSPCLP-GPPGLPCPVSPLGPAGPALQTVPGPQGPPGP 809



 Score = 31.6 bits (70), Expect = 0.25
 Identities = 20/49 (40%), Positives = 21/49 (42%), Gaps = 8/49 (16%)

Query: 18   PGSPGSPCSPLSPFGPG-------GPIGPTSPFSPSGPMGPFFPVSPWS 59
            PG PG P  P  P GP        GP GP  P  P G MG    V  W+
Sbjct: 1399 PGPPGPPGPPSFP-GPHRQTISVPGPPGPPGPPGPPGTMGASSGVRLWA 1446



 Score = 29.6 bits (65), Expect = 0.96
 Identities = 21/55 (38%), Positives = 24/55 (43%), Gaps = 3/55 (5%)

Query: 19   GSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFS-PARPSGPVLP 72
            G  G P      FG  G  GP  P  P GP G   PV   + F+  +RP  P LP
Sbjct: 1236 GEKGEPGDASLGFGMRGMPGPPGPPGPPGPPGT--PVYDSNVFAESSRPGPPGLP 1288



 Score = 29.3 bits (64), Expect = 1.3
 Identities = 16/37 (43%), Positives = 17/37 (45%), Gaps = 1/37 (2%)

Query: 18  PGSPGSPCSPLSPFGPG-GPIGPTSPFSPSGPMGPFF 53
           PG+PG          PG G  GP  P  P GP GP F
Sbjct: 840 PGTPGDVGPKGDKGDPGVGERGPPGPQGPPGPPGPSF 876



 Score = 29.3 bits (64), Expect = 1.3
 Identities = 20/54 (37%), Positives = 21/54 (38%), Gaps = 1/54 (1%)

Query: 19   GSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPVLP 72
            GS G   +P      G P GP      SG  G   P  P  P  P  P GP LP
Sbjct: 971  GSLGEAGAPGHKGSKGAP-GPAGARGESGLAGAPGPAGPPGPPGPPGPPGPGLP 1023



 Score = 28.5 bits (62), Expect = 2.1
 Identities = 22/62 (35%), Positives = 22/62 (35%), Gaps = 12/62 (19%)

Query: 18  PGSPGSPCSPLSPFGPG----------GPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPS 67
           PG PG P  P  P  PG          GP G        GP  P FP  P  P  P R  
Sbjct: 905 PGPPGPPGVPGLPGEPGRFGVNSSDVPGPAGLPGVPGREGP--PGFPGLPGPPGPPGREG 962

Query: 68  GP 69
            P
Sbjct: 963 PP 964



 Score = 27.7 bits (60), Expect = 3.7
 Identities = 23/59 (38%), Positives = 23/59 (38%), Gaps = 5/59 (8%)

Query: 19   GSPGSPCSPLSPFGPG--GPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPVLPLKP 75
            G PG P  P  P G G  G  GP  P  P  P  P FP       S   P GP  P  P
Sbjct: 1377 GQPGPP-GPQGPPGIGYEGRQGPPGP--PGPPGPPSFPGPHRQTISVPGPPGPPGPPGP 1432



 Score = 27.3 bits (59), Expect = 4.8
 Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 1/29 (3%)

Query: 13   PHLQTPGSPGSPCSPLSPFGPGGPIGPTS 41
            PH QT   PG P  P  P GP G +G +S
Sbjct: 1413 PHRQTISVPGPP-GPPGPPGPPGTMGASS 1440



 Score = 26.9 bits (58), Expect = 6.2
 Identities = 21/53 (39%), Positives = 21/53 (39%), Gaps = 7/53 (13%)

Query: 18   PGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPA-RPSGP 69
            PG P  P  P  P GP GP  P       G  GPF     WS    A  P GP
Sbjct: 1003 PG-PAGPPGPPGPPGPPGPGLPAGFDDMEGSGGPF-----WSTARSADGPQGP 1049



 Score = 26.6 bits (57), Expect = 8.2
 Identities = 20/55 (36%), Positives = 21/55 (38%), Gaps = 6/55 (10%)

Query: 18   PGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPVLP 72
            P  PG P       G GGP   T+  S  GP GP     P  P     P  P LP
Sbjct: 1017 PPGPGLPAGFDDMEGSGGPFWSTAR-SADGPQGP-----PGLPGLKGDPGVPGLP 1065



 Score = 26.6 bits (57), Expect = 8.2
 Identities = 20/54 (37%), Positives = 20/54 (37%), Gaps = 14/54 (25%)

Query: 18   PGSPGSPCSP-------LSPFGPGGPIGPTS-------PFSPSGPMGPFFPVSP 57
            PG PG    P         P GP GP GP S         S  GP GP  P  P
Sbjct: 1379 PGPPGPQGPPGIGYEGRQGPPGPPGPPGPPSFPGPHRQTISVPGPPGPPGPPGP 1432


>gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Homo
           sapiens]
          Length = 1336

 Score = 44.7 bits (104), Expect = 3e-05
 Identities = 27/63 (42%), Positives = 30/63 (47%), Gaps = 4/63 (6%)

Query: 18  PGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPVLPLKPSE 77
           PG PG PC P+SP GP GP   T P  P GP GP  P    +P     P  P    KP +
Sbjct: 363 PGPPGLPC-PVSPLGPAGPALQTVP-GPQGPPGP--PGRDGTPGRDGEPGDPGEDGKPGD 418

Query: 78  RFP 80
             P
Sbjct: 419 TGP 421



 Score = 37.7 bits (86), Expect = 0.004
 Identities = 22/50 (44%), Positives = 22/50 (44%), Gaps = 8/50 (16%)

Query: 19  GSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSG 68
           G PGSPC P       GP G   P SP GP GP     P  P  P  P G
Sbjct: 355 GPPGSPCLP-------GPPGLPCPVSPLGPAGPALQTVP-GPQGPPGPPG 396



 Score = 36.2 bits (82), Expect = 0.010
 Identities = 23/72 (31%), Positives = 29/72 (40%)

Query: 19  GSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPVLPLKPSER 78
           G PG P  P  P  PG P+  ++ F+ S   GP        P  P    G V P  P  +
Sbjct: 837 GMPGPPGPPGPPGPPGTPVYDSNVFAESSRPGPPGLPGNQGPPGPKGAKGEVGPPGPPGQ 896

Query: 79  FPFHLSLLSCRL 90
           FPF    L   +
Sbjct: 897 FPFDFLQLEAEM 908



 Score = 32.3 bits (72), Expect = 0.15
 Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 1/50 (2%)

Query: 19  GSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSG 68
           G+PG   S  +P GP G  G +      GP GP  P  P  P  P  P+G
Sbjct: 562 GAPGHKGSKGAP-GPAGARGESGLAGAPGPAGPPGPPGPPGPPGPGLPAG 610



 Score = 31.6 bits (70), Expect = 0.25
 Identities = 26/59 (44%), Positives = 26/59 (44%), Gaps = 12/59 (20%)

Query: 19  GSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPA-----RPSGPVLP 72
           G PG P  P    G  GP  P SP  P GP G   PVSP  P  PA      P GP  P
Sbjct: 343 GEPGVPGPP----GRAGP--PGSPCLP-GPPGLPCPVSPLGPAGPALQTVPGPQGPPGP 394



 Score = 31.6 bits (70), Expect = 0.25
 Identities = 20/49 (40%), Positives = 21/49 (42%), Gaps = 8/49 (16%)

Query: 18   PGSPGSPCSPLSPFGPG-------GPIGPTSPFSPSGPMGPFFPVSPWS 59
            PG PG P  P  P GP        GP GP  P  P G MG    V  W+
Sbjct: 984  PGPPGPPGPPSFP-GPHRQTISVPGPPGPPGPPGPPGTMGASSGVRLWA 1031



 Score = 29.6 bits (65), Expect = 0.96
 Identities = 21/55 (38%), Positives = 24/55 (43%), Gaps = 3/55 (5%)

Query: 19  GSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFS-PARPSGPVLP 72
           G  G P      FG  G  GP  P  P GP G   PV   + F+  +RP  P LP
Sbjct: 821 GEKGEPGDASLGFGMRGMPGPPGPPGPPGPPGT--PVYDSNVFAESSRPGPPGLP 873



 Score = 29.3 bits (64), Expect = 1.3
 Identities = 16/37 (43%), Positives = 17/37 (45%), Gaps = 1/37 (2%)

Query: 18  PGSPGSPCSPLSPFGPG-GPIGPTSPFSPSGPMGPFF 53
           PG+PG          PG G  GP  P  P GP GP F
Sbjct: 425 PGTPGDVGPKGDKGDPGVGERGPPGPQGPPGPPGPSF 461



 Score = 29.3 bits (64), Expect = 1.3
 Identities = 20/54 (37%), Positives = 21/54 (38%), Gaps = 1/54 (1%)

Query: 19  GSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPVLP 72
           GS G   +P      G P GP      SG  G   P  P  P  P  P GP LP
Sbjct: 556 GSLGEAGAPGHKGSKGAP-GPAGARGESGLAGAPGPAGPPGPPGPPGPPGPGLP 608



 Score = 28.5 bits (62), Expect = 2.1
 Identities = 22/62 (35%), Positives = 22/62 (35%), Gaps = 12/62 (19%)

Query: 18  PGSPGSPCSPLSPFGPG----------GPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPS 67
           PG PG P  P  P  PG          GP G        GP  P FP  P  P  P R  
Sbjct: 490 PGPPGPPGVPGLPGEPGRFGVNSSDVPGPAGLPGVPGREGP--PGFPGLPGPPGPPGREG 547

Query: 68  GP 69
            P
Sbjct: 548 PP 549



 Score = 27.7 bits (60), Expect = 3.7
 Identities = 23/59 (38%), Positives = 23/59 (38%), Gaps = 5/59 (8%)

Query: 19   GSPGSPCSPLSPFGPG--GPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPVLPLKP 75
            G PG P  P  P G G  G  GP  P  P  P  P FP       S   P GP  P  P
Sbjct: 962  GQPGPP-GPQGPPGIGYEGRQGPPGP--PGPPGPPSFPGPHRQTISVPGPPGPPGPPGP 1017



 Score = 27.3 bits (59), Expect = 4.8
 Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 1/29 (3%)

Query: 13   PHLQTPGSPGSPCSPLSPFGPGGPIGPTS 41
            PH QT   PG P  P  P GP G +G +S
Sbjct: 998  PHRQTISVPGPP-GPPGPPGPPGTMGASS 1025



 Score = 26.9 bits (58), Expect = 6.2
 Identities = 21/53 (39%), Positives = 21/53 (39%), Gaps = 7/53 (13%)

Query: 18  PGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPA-RPSGP 69
           PG P  P  P  P GP GP  P       G  GPF     WS    A  P GP
Sbjct: 588 PG-PAGPPGPPGPPGPPGPGLPAGFDDMEGSGGPF-----WSTARSADGPQGP 634



 Score = 26.6 bits (57), Expect = 8.2
 Identities = 20/55 (36%), Positives = 21/55 (38%), Gaps = 6/55 (10%)

Query: 18  PGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPVLP 72
           P  PG P       G GGP   T+  S  GP GP     P  P     P  P LP
Sbjct: 602 PPGPGLPAGFDDMEGSGGPFWSTAR-SADGPQGP-----PGLPGLKGDPGVPGLP 650



 Score = 26.6 bits (57), Expect = 8.2
 Identities = 20/54 (37%), Positives = 20/54 (37%), Gaps = 14/54 (25%)

Query: 18   PGSPGSPCSP-------LSPFGPGGPIGPTS-------PFSPSGPMGPFFPVSP 57
            PG PG    P         P GP GP GP S         S  GP GP  P  P
Sbjct: 964  PGPPGPQGPPGIGYEGRQGPPGPPGPPGPPSFPGPHRQTISVPGPPGPPGPPGP 1017


>gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Homo
           sapiens]
          Length = 1516

 Score = 44.7 bits (104), Expect = 3e-05
 Identities = 27/63 (42%), Positives = 30/63 (47%), Gaps = 4/63 (6%)

Query: 18  PGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPVLPLKPSE 77
           PG PG PC P+SP GP GP   T P  P GP GP  P    +P     P  P    KP +
Sbjct: 543 PGPPGLPC-PVSPLGPAGPALQTVP-GPQGPPGP--PGRDGTPGRDGEPGDPGEDGKPGD 598

Query: 78  RFP 80
             P
Sbjct: 599 TGP 601



 Score = 37.7 bits (86), Expect = 0.004
 Identities = 22/50 (44%), Positives = 22/50 (44%), Gaps = 8/50 (16%)

Query: 19  GSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSG 68
           G PGSPC P       GP G   P SP GP GP     P  P  P  P G
Sbjct: 535 GPPGSPCLP-------GPPGLPCPVSPLGPAGPALQTVP-GPQGPPGPPG 576



 Score = 36.2 bits (82), Expect = 0.010
 Identities = 23/72 (31%), Positives = 29/72 (40%)

Query: 19   GSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPVLPLKPSER 78
            G PG P  P  P  PG P+  ++ F+ S   GP        P  P    G V P  P  +
Sbjct: 1017 GMPGPPGPPGPPGPPGTPVYDSNVFAESSRPGPPGLPGNQGPPGPKGAKGEVGPPGPPGQ 1076

Query: 79   FPFHLSLLSCRL 90
            FPF    L   +
Sbjct: 1077 FPFDFLQLEAEM 1088



 Score = 32.3 bits (72), Expect = 0.15
 Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 1/50 (2%)

Query: 19  GSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSG 68
           G+PG   S  +P GP G  G +      GP GP  P  P  P  P  P+G
Sbjct: 742 GAPGHKGSKGAP-GPAGARGESGLAGAPGPAGPPGPPGPPGPPGPGLPAG 790



 Score = 31.6 bits (70), Expect = 0.25
 Identities = 26/59 (44%), Positives = 26/59 (44%), Gaps = 12/59 (20%)

Query: 19  GSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPA-----RPSGPVLP 72
           G PG P  P    G  GP  P SP  P GP G   PVSP  P  PA      P GP  P
Sbjct: 523 GEPGVPGPP----GRAGP--PGSPCLP-GPPGLPCPVSPLGPAGPALQTVPGPQGPPGP 574



 Score = 31.6 bits (70), Expect = 0.25
 Identities = 20/49 (40%), Positives = 21/49 (42%), Gaps = 8/49 (16%)

Query: 18   PGSPGSPCSPLSPFGPG-------GPIGPTSPFSPSGPMGPFFPVSPWS 59
            PG PG P  P  P GP        GP GP  P  P G MG    V  W+
Sbjct: 1164 PGPPGPPGPPSFP-GPHRQTISVPGPPGPPGPPGPPGTMGASSGVRLWA 1211



 Score = 29.6 bits (65), Expect = 0.96
 Identities = 21/55 (38%), Positives = 24/55 (43%), Gaps = 3/55 (5%)

Query: 19   GSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFS-PARPSGPVLP 72
            G  G P      FG  G  GP  P  P GP G   PV   + F+  +RP  P LP
Sbjct: 1001 GEKGEPGDASLGFGMRGMPGPPGPPGPPGPPGT--PVYDSNVFAESSRPGPPGLP 1053



 Score = 29.3 bits (64), Expect = 1.3
 Identities = 16/37 (43%), Positives = 17/37 (45%), Gaps = 1/37 (2%)

Query: 18  PGSPGSPCSPLSPFGPG-GPIGPTSPFSPSGPMGPFF 53
           PG+PG          PG G  GP  P  P GP GP F
Sbjct: 605 PGTPGDVGPKGDKGDPGVGERGPPGPQGPPGPPGPSF 641



 Score = 29.3 bits (64), Expect = 1.3
 Identities = 20/54 (37%), Positives = 21/54 (38%), Gaps = 1/54 (1%)

Query: 19  GSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPVLP 72
           GS G   +P      G P GP      SG  G   P  P  P  P  P GP LP
Sbjct: 736 GSLGEAGAPGHKGSKGAP-GPAGARGESGLAGAPGPAGPPGPPGPPGPPGPGLP 788



 Score = 28.5 bits (62), Expect = 2.1
 Identities = 22/62 (35%), Positives = 22/62 (35%), Gaps = 12/62 (19%)

Query: 18  PGSPGSPCSPLSPFGPG----------GPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPS 67
           PG PG P  P  P  PG          GP G        GP  P FP  P  P  P R  
Sbjct: 670 PGPPGPPGVPGLPGEPGRFGVNSSDVPGPAGLPGVPGREGP--PGFPGLPGPPGPPGREG 727

Query: 68  GP 69
            P
Sbjct: 728 PP 729



 Score = 27.7 bits (60), Expect = 3.7
 Identities = 23/59 (38%), Positives = 23/59 (38%), Gaps = 5/59 (8%)

Query: 19   GSPGSPCSPLSPFGPG--GPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPVLPLKP 75
            G PG P  P  P G G  G  GP  P  P  P  P FP       S   P GP  P  P
Sbjct: 1142 GQPGPP-GPQGPPGIGYEGRQGPPGP--PGPPGPPSFPGPHRQTISVPGPPGPPGPPGP 1197



 Score = 27.3 bits (59), Expect = 4.8
 Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 1/29 (3%)

Query: 13   PHLQTPGSPGSPCSPLSPFGPGGPIGPTS 41
            PH QT   PG P  P  P GP G +G +S
Sbjct: 1178 PHRQTISVPGPP-GPPGPPGPPGTMGASS 1205



 Score = 26.9 bits (58), Expect = 6.2
 Identities = 21/53 (39%), Positives = 21/53 (39%), Gaps = 7/53 (13%)

Query: 18  PGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPA-RPSGP 69
           PG P  P  P  P GP GP  P       G  GPF     WS    A  P GP
Sbjct: 768 PG-PAGPPGPPGPPGPPGPGLPAGFDDMEGSGGPF-----WSTARSADGPQGP 814



 Score = 26.6 bits (57), Expect = 8.2
 Identities = 20/55 (36%), Positives = 21/55 (38%), Gaps = 6/55 (10%)

Query: 18  PGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPVLP 72
           P  PG P       G GGP   T+  S  GP GP     P  P     P  P LP
Sbjct: 782 PPGPGLPAGFDDMEGSGGPFWSTAR-SADGPQGP-----PGLPGLKGDPGVPGLP 830



 Score = 26.6 bits (57), Expect = 8.2
 Identities = 20/54 (37%), Positives = 20/54 (37%), Gaps = 14/54 (25%)

Query: 18   PGSPGSPCSP-------LSPFGPGGPIGPTS-------PFSPSGPMGPFFPVSP 57
            PG PG    P         P GP GP GP S         S  GP GP  P  P
Sbjct: 1144 PGPPGPQGPPGIGYEGRQGPPGPPGPPGPPSFPGPHRQTISVPGPPGPPGPPGP 1197


>gi|34365793 WNK lysine deficient protein kinase 4 [Homo sapiens]
          Length = 1243

 Score = 43.5 bits (101), Expect = 6e-05
 Identities = 34/88 (38%), Positives = 40/88 (45%), Gaps = 10/88 (11%)

Query: 4   EKADLSTMLPHLQ------TPGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFP-VS 56
           E+   ST L H        +  SPG+P SP +PF PG PI P   F  + P  P  P  S
Sbjct: 784 EELQSSTSLEHRSWTAFSTSSSSPGTPLSPGNPFSPGTPISPGPIFPITSP--PCHPSPS 841

Query: 57  PWSPFSPARPSGPVLPLKPSERFPFHLS 84
           P+SP S    S P  P   S   PF  S
Sbjct: 842 PFSPISSQVSSNP-SPHPTSSPLPFSSS 868


>gi|162138911 IQ motif and Sec7 domain 2 isoform1 [Homo sapiens]
          Length = 1488

 Score = 42.4 bits (98), Expect = 1e-04
 Identities = 27/69 (39%), Positives = 31/69 (44%), Gaps = 3/69 (4%)

Query: 11   MLPHLQTPGSPGS--PCSPLS-PFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPS 67
            M+P     G PGS  P    S P  P  P+ P SP  P     P  P SP +P SP  P+
Sbjct: 1396 MMPAAGAAGGPGSRPPGGSYSHPHHPQSPLSPHSPIPPHPSYPPLPPPSPHTPHSPLPPT 1455

Query: 68   GPVLPLKPS 76
             P  PL  S
Sbjct: 1456 SPHGPLHAS 1464



 Score = 40.8 bits (94), Expect = 4e-04
 Identities = 22/55 (40%), Positives = 23/55 (41%)

Query: 18   PGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPVLP 72
            P  P SP SP SP  P     P  P SP  P  P  P SP  P   + P G   P
Sbjct: 1418 PHHPQSPLSPHSPIPPHPSYPPLPPPSPHTPHSPLPPTSPHGPLHASGPPGTANP 1472



 Score = 39.3 bits (90), Expect = 0.001
 Identities = 23/63 (36%), Positives = 27/63 (42%)

Query: 14   HLQTPGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPVLPL 73
            H Q+P SP SP  P   + P  P  P +P SP  P  P  P+    P   A P       
Sbjct: 1420 HPQSPLSPHSPIPPHPSYPPLPPPSPHTPHSPLPPTSPHGPLHASGPPGTANPPSANPKA 1479

Query: 74   KPS 76
            KPS
Sbjct: 1480 KPS 1482



 Score = 28.1 bits (61), Expect = 2.8
 Identities = 15/39 (38%), Positives = 17/39 (43%)

Query: 13   PHLQTPGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGP 51
            P   TP SP  P SP  P    GP G  +P S +    P
Sbjct: 1443 PSPHTPHSPLPPTSPHGPLHASGPPGTANPPSANPKAKP 1481


>gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]
          Length = 1499

 Score = 42.0 bits (97), Expect = 2e-04
 Identities = 21/51 (41%), Positives = 24/51 (47%), Gaps = 1/51 (1%)

Query: 19   GSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGP 69
            GS G P  P  P GP GP+GP+      GP+GP  P         A P GP
Sbjct: 1164 GSAGIP-GPFGPRGPPGPVGPSGKEGNPGPLGPIGPPGVRGSVGEAGPEGP 1213



 Score = 35.8 bits (81), Expect = 0.013
 Identities = 25/67 (37%), Positives = 26/67 (38%), Gaps = 5/67 (7%)

Query: 18   PGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPVLPLKPSE 77
            PG P  P  P  P GP G  G   P  P GP G    V    P  P    GP  P  P  
Sbjct: 1169 PG-PFGPRGPPGPVGPSGKEGNPGPLGPIGPPGVRGSVGEAGPEGPPGEPGPPGPPGP-- 1225

Query: 78   RFPFHLS 84
              P HL+
Sbjct: 1226 --PGHLT 1230



 Score = 35.4 bits (80), Expect = 0.018
 Identities = 19/51 (37%), Positives = 20/51 (39%), Gaps = 4/51 (7%)

Query: 19   GSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGP 69
            G PG P     P G  G +GPT      GP GP  P     P     P GP
Sbjct: 1005 GMPGLP----GPAGTPGKVGPTGATGDKGPPGPVGPPGSNGPVGEPGPEGP 1051



 Score = 35.0 bits (79), Expect = 0.023
 Identities = 23/60 (38%), Positives = 25/60 (41%), Gaps = 6/60 (10%)

Query: 18  PGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPVLPLKPSE 77
           PGS G    P+ P GP G  G      P+GP G      P  P     P GP  P KP E
Sbjct: 212 PGSVG----PVGPRGPQGLQGQQGGAGPTGPPGEPGDPGPMGPIGSRGPEGP--PGKPGE 265



 Score = 34.3 bits (77), Expect = 0.039
 Identities = 20/51 (39%), Positives = 20/51 (39%), Gaps = 4/51 (7%)

Query: 19   GSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGP 69
            G PG P     P G  G  G   PF P GP GP  P        P  P GP
Sbjct: 1152 GLPGPP----GPNGEQGSAGIPGPFGPRGPPGPVGPSGKEGNPGPLGPIGP 1198



 Score = 33.1 bits (74), Expect = 0.087
 Identities = 20/53 (37%), Positives = 20/53 (37%), Gaps = 1/53 (1%)

Query: 18   PGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPV 70
            PG PG P       G  GP GP  P  P GP G      P  P  P    G V
Sbjct: 1154 PGPPG-PNGEQGSAGIPGPFGPRGPPGPVGPSGKEGNPGPLGPIGPPGVRGSV 1205



 Score = 32.7 bits (73), Expect = 0.11
 Identities = 20/51 (39%), Positives = 21/51 (41%), Gaps = 1/51 (1%)

Query: 18   PGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSG 68
            PG PG   +P    GP G  G   P  P GP G   PV    P  PA   G
Sbjct: 1007 PGLPGPAGTP-GKVGPTGATGDKGPPGPVGPPGSNGPVGEPGPEGPAGNDG 1056



 Score = 31.2 bits (69), Expect = 0.33
 Identities = 21/58 (36%), Positives = 22/58 (37%), Gaps = 11/58 (18%)

Query: 19  GSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMG-------PFFPVSPWSPFSPARPSGP 69
           G PG    P  P G  GP G   P    GP G       P  P  P +P  P  PS P
Sbjct: 129 GRPG----PAGPPGSQGPRGERGPKGRPGPRGPQGIDGEPGVPGQPGAPGPPGHPSHP 182



 Score = 31.2 bits (69), Expect = 0.33
 Identities = 19/65 (29%), Positives = 24/65 (36%)

Query: 4   EKADLSTMLPHLQTPGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSP 63
           EK+ L + +  +     P  P  P    G  G  GPT P    G  GP  P+    P  P
Sbjct: 200 EKSGLGSQVGLMPGSVGPVGPRGPQGLQGQQGGAGPTGPPGEPGDPGPMGPIGSRGPEGP 259

Query: 64  ARPSG 68
               G
Sbjct: 260 PGKPG 264



 Score = 31.2 bits (69), Expect = 0.33
 Identities = 22/55 (40%), Positives = 23/55 (41%), Gaps = 9/55 (16%)

Query: 18  PGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPVLP 72
           PG+ G P S   P GP G  G   P   SGP G        S   P RP  P LP
Sbjct: 524 PGNRGFPGSDGLP-GPKGAQGERGPVGSSGPKG--------SQGDPGRPGEPGLP 569



 Score = 31.2 bits (69), Expect = 0.33
 Identities = 20/55 (36%), Positives = 21/55 (38%), Gaps = 1/55 (1%)

Query: 18   PGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPVLP 72
            PG  G    P  P GP G  G   P   +G  GP  PV P     P    GP  P
Sbjct: 998  PGQRGERGMPGLP-GPAGTPGKVGPTGATGDKGPPGPVGPPGSNGPVGEPGPEGP 1051



 Score = 31.2 bits (69), Expect = 0.33
 Identities = 17/44 (38%), Positives = 19/44 (43%)

Query: 32   GPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPVLPLKP 75
            G  GP GP      +G  GPF P  P  P  P+   G   PL P
Sbjct: 1152 GLPGPPGPNGEQGSAGIPGPFGPRGPPGPVGPSGKEGNPGPLGP 1195



 Score = 31.2 bits (69), Expect = 0.33
 Identities = 16/44 (36%), Positives = 18/44 (40%)

Query: 32   GPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPVLPLKP 75
            GP GP G        GP GP  P  P  P       GP+ P+ P
Sbjct: 1155 GPPGPNGEQGSAGIPGPFGPRGPPGPVGPSGKEGNPGPLGPIGP 1198



 Score = 30.4 bits (67), Expect = 0.57
 Identities = 21/59 (35%), Positives = 23/59 (38%), Gaps = 5/59 (8%)

Query: 18  PGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMG----PFFPVSPWSPFSPARPSGPVLP 72
           PG PG P  P+ P G  GP GP       G  G    P       SP +   P  P LP
Sbjct: 239 PGEPGDP-GPMGPIGSRGPEGPPGKPGEDGEPGRNGNPGEVGFAGSPGARGFPGAPGLP 296



 Score = 30.4 bits (67), Expect = 0.57
 Identities = 22/54 (40%), Positives = 26/54 (48%), Gaps = 5/54 (9%)

Query: 19  GSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPAR--PSGPV 70
           G+ G P  PL P GP GP G      P G +GP  P S  +P S     P+G V
Sbjct: 795 GARGLP-GPLGPPGPAGPTGEKGEPGPRGLVGP--PGSRGNPGSRGENGPTGAV 845



 Score = 30.0 bits (66), Expect = 0.74
 Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 4/58 (6%)

Query: 19  GSPGSP--CSPLSPFGPGGPIGPTSPFSPSGPMGP-FFPVSPWSPFSPARPSGPVLPL 73
           G+PGS     P  P G  GP+GP       G +GP   P    +   P +P GP+ PL
Sbjct: 315 GAPGSKGEAGPTGPMGAMGPLGPRGMPGERGRLGPQGAPGQRGAHGMPGKP-GPMGPL 371



 Score = 30.0 bits (66), Expect = 0.74
 Identities = 17/42 (40%), Positives = 19/42 (45%), Gaps = 5/42 (11%)

Query: 15  LQTPGSPGSPCSP-----LSPFGPGGPIGPTSPFSPSGPMGP 51
           L  PGS G P +P       P G  GP GP      +GP GP
Sbjct: 371 LGIPGSSGFPGNPGMKGEAGPTGARGPEGPQGQRGETGPPGP 412



 Score = 29.6 bits (65), Expect = 0.96
 Identities = 22/59 (37%), Positives = 25/59 (42%), Gaps = 9/59 (15%)

Query: 18  PGSPGSPCSP--LSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPAR-----PSGP 69
           PG+ G P S   + P GP G  GP  P    G  GP  P     P S  R     P+GP
Sbjct: 905 PGATGFPGSAGRVGPPGPAGAPGPAGPLGEPGKEGP--PGLRGDPGSHGRVGDRGPAGP 961



 Score = 28.9 bits (63), Expect = 1.6
 Identities = 19/53 (35%), Positives = 20/53 (37%), Gaps = 1/53 (1%)

Query: 18  PGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPV 70
           PG PG P  PL   G  G  G       +GP G   P  P        P GPV
Sbjct: 362 PGKPG-PMGPLGIPGSSGFPGNPGMKGEAGPTGARGPEGPQGQRGETGPPGPV 413



 Score = 28.9 bits (63), Expect = 1.6
 Identities = 14/35 (40%), Positives = 16/35 (45%), Gaps = 2/35 (5%)

Query: 18  PGSPG--SPCSPLSPFGPGGPIGPTSPFSPSGPMG 50
           PG+PG      P    GP GP G      P GP+G
Sbjct: 380 PGNPGMKGEAGPTGARGPEGPQGQRGETGPPGPVG 414



 Score = 28.5 bits (62), Expect = 2.1
 Identities = 17/51 (33%), Positives = 19/51 (37%), Gaps = 1/51 (1%)

Query: 18  PGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSG 68
           PG  G+P       GP GP+GP       G  GP  P        P  P G
Sbjct: 638 PGQRGAPGKD-GEVGPSGPVGPPGLAGERGEQGPPGPTGFQGLPGPPGPPG 687



 Score = 28.1 bits (61), Expect = 2.8
 Identities = 22/54 (40%), Positives = 24/54 (44%), Gaps = 5/54 (9%)

Query: 18  PGSPGSPCSP--LSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGP 69
           PG  GSP  P  +   G  G  GPT     SGP G   P  P SP  P   +GP
Sbjct: 410 PGPVGSPGLPGAIGTDGTPGAKGPTGSPGTSGPPGSAGP--PGSP-GPQGSTGP 460



 Score = 28.1 bits (61), Expect = 2.8
 Identities = 18/48 (37%), Positives = 18/48 (37%), Gaps = 5/48 (10%)

Query: 18  PGSPG-----SPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSP 60
           PG PG      P     P G  GPIGP       GP G    V P  P
Sbjct: 470 PGVPGFKGEAGPKGEPGPHGIQGPIGPPGEEGKRGPRGDPGTVGPPGP 517



 Score = 27.7 bits (60), Expect = 3.7
 Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 2/36 (5%)

Query: 17  TPGSPGSPCSP--LSPFGPGGPIGPTSPFSPSGPMG 50
           TPG+ G   SP    P G  GP G   P   +GP G
Sbjct: 427 TPGAKGPTGSPGTSGPPGSAGPPGSPGPQGSTGPQG 462



 Score = 27.3 bits (59), Expect = 4.8
 Identities = 15/45 (33%), Positives = 17/45 (37%), Gaps = 11/45 (24%)

Query: 18  PGSPG-----------SPCSPLSPFGPGGPIGPTSPFSPSGPMGP 51
           PG PG            P   +   G  G  GPT P    GP+GP
Sbjct: 293 PGLPGLKGHRGHKGLEGPKGEVGAPGSKGEAGPTGPMGAMGPLGP 337



 Score = 27.3 bits (59), Expect = 4.8
 Identities = 18/53 (33%), Positives = 18/53 (33%), Gaps = 2/53 (3%)

Query: 18  PGSPGSPC--SPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSG 68
           PG PG P       P G  GP G   P  P G  G   P        P  P G
Sbjct: 467 PGDPGVPGFKGEAGPKGEPGPHGIQGPIGPPGEEGKRGPRGDPGTVGPPGPVG 519



 Score = 26.9 bits (58), Expect = 6.2
 Identities = 16/55 (29%), Positives = 22/55 (40%), Gaps = 11/55 (20%)

Query: 17  TPGSPGSPCSPLSPF-----------GPGGPIGPTSPFSPSGPMGPFFPVSPWSP 60
           +PG+ G P +P  P            GP G +G       +GP GP   + P  P
Sbjct: 283 SPGARGFPGAPGLPGLKGHRGHKGLEGPKGEVGAPGSKGEAGPTGPMGAMGPLGP 337



 Score = 26.9 bits (58), Expect = 6.2
 Identities = 19/54 (35%), Positives = 19/54 (35%), Gaps = 2/54 (3%)

Query: 19  GSPGSPCSP--LSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPV 70
           G PG P  P      GP G  GP     P GP G      P        P GPV
Sbjct: 465 GQPGDPGVPGFKGEAGPKGEPGPHGIQGPIGPPGEEGKRGPRGDPGTVGPPGPV 518


>gi|23592228 extraembryonic, spermatogenesis, homeobox 1-like [Homo
           sapiens]
          Length = 406

 Score = 42.0 bits (97), Expect = 2e-04
 Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 6/62 (9%)

Query: 18  PGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGP------FFPVSPWSPFSPARPSGPVL 71
           P  P  P  P+ P  P  P+ P +P  P   M P        PV PW P +P  P  P+ 
Sbjct: 251 PMPPRPPMVPMPPRPPIAPMPPMAPVPPGSRMAPVPPGPRMAPVPPWPPMAPVPPWPPMA 310

Query: 72  PL 73
           P+
Sbjct: 311 PV 312



 Score = 41.2 bits (95), Expect = 3e-04
 Identities = 23/69 (33%), Positives = 29/69 (42%), Gaps = 6/69 (8%)

Query: 18  PGSPGSPCSPLSPFGPGGPIGPT------SPFSPSGPMGPFFPVSPWSPFSPARPSGPVL 71
           P  P +P  P++P  PG  + P       +P  P  PM P  P  P +P     P  PV 
Sbjct: 263 PRPPIAPMPPMAPVPPGSRMAPVPPGPRMAPVPPWPPMAPVPPWPPMAPVPTGPPMAPVP 322

Query: 72  PLKPSERFP 80
           P  P  R P
Sbjct: 323 PGPPMARVP 331



 Score = 39.7 bits (91), Expect = 0.001
 Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 9/69 (13%)

Query: 18  PGSPGSPCSPLSPFGPGGPIG------PTSPFSPSGPMGPFFPVSPWSPFSPARPSGPVL 71
           P +P  P  P++   PG P+       P +P  P  PM    P+ P  P +P  P  P+ 
Sbjct: 317 PMAPVPPGPPMARVPPGPPMARVPPGPPMAPLPPGPPMA---PLPPGPPMAPLPPGPPMA 373

Query: 72  PLKPSERFP 80
           PL P    P
Sbjct: 374 PLPPRSHVP 382



 Score = 38.5 bits (88), Expect = 0.002
 Identities = 21/66 (31%), Positives = 27/66 (40%), Gaps = 3/66 (4%)

Query: 18  PGSPGSPCSPLSPFGPGGPIGPTSPFS---PSGPMGPFFPVSPWSPFSPARPSGPVLPLK 74
           P   G P +P+ P  P   + P  P +   P  PM P  P  P +P  P  P  P+ P  
Sbjct: 311 PVPTGPPMAPVPPGPPMARVPPGPPMARVPPGPPMAPLPPGPPMAPLPPGPPMAPLPPGP 370

Query: 75  PSERFP 80
           P    P
Sbjct: 371 PMAPLP 376



 Score = 37.4 bits (85), Expect = 0.005
 Identities = 22/63 (34%), Positives = 25/63 (39%)

Query: 18  PGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPVLPLKPSE 77
           PGS  +P  P     P  P  P +P  P  PM P     P +P  P  P   V P  P  
Sbjct: 278 PGSRMAPVPPGPRMAPVPPWPPMAPVPPWPPMAPVPTGPPMAPVPPGPPMARVPPGPPMA 337

Query: 78  RFP 80
           R P
Sbjct: 338 RVP 340



 Score = 35.8 bits (81), Expect = 0.013
 Identities = 21/64 (32%), Positives = 25/64 (39%), Gaps = 6/64 (9%)

Query: 18  PGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFP------VSPWSPFSPARPSGPVL 71
           PG   +P  P  P  P  P  P +P     PM P  P      V P  P +   P  P+ 
Sbjct: 287 PGPRMAPVPPWPPMAPVPPWPPMAPVPTGPPMAPVPPGPPMARVPPGPPMARVPPGPPMA 346

Query: 72  PLKP 75
           PL P
Sbjct: 347 PLPP 350


>gi|56243590 WD repeat domain 33 isoform 1 [Homo sapiens]
          Length = 1336

 Score = 41.6 bits (96), Expect = 2e-04
 Identities = 21/49 (42%), Positives = 21/49 (42%)

Query: 27  PLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPVLPLKP 75
           P  P GP GP GP     P G MGP  P  P     P  P GP   L P
Sbjct: 683 PHGPLGPQGPPGPQGSSGPQGHMGPQGPPGPQGHIGPQGPPGPQGHLGP 731



 Score = 40.4 bits (93), Expect = 5e-04
 Identities = 21/58 (36%), Positives = 23/58 (39%)

Query: 15  LQTPGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPVLP 72
           +Q    P  P  P  P GP G  GP     P GP GP   + P  P  P    GP  P
Sbjct: 677 MQRHPGPHGPLGPQGPPGPQGSSGPQGHMGPQGPPGPQGHIGPQGPPGPQGHLGPQGP 734



 Score = 40.4 bits (93), Expect = 5e-04
 Identities = 23/55 (41%), Positives = 25/55 (45%), Gaps = 1/55 (1%)

Query: 21  PGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPVLPLKP 75
           PG P  PL P GP GP G + P    GP GP  P     P  P  P G + P  P
Sbjct: 681 PG-PHGPLGPQGPPGPQGSSGPQGHMGPQGPPGPQGHIGPQGPPGPQGHLGPQGP 734



 Score = 38.5 bits (88), Expect = 0.002
 Identities = 19/51 (37%), Positives = 21/51 (41%)

Query: 18  PGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSG 68
           P  P  P  P    GP G +GP  P  P G +GP  P  P     P  P G
Sbjct: 686 PLGPQGPPGPQGSSGPQGHMGPQGPPGPQGHIGPQGPPGPQGHLGPQGPPG 736



 Score = 37.4 bits (85), Expect = 0.005
 Identities = 20/57 (35%), Positives = 21/57 (36%)

Query: 16  QTPGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPVLP 72
           Q P  P     P    GP GP GP     P GP GP   + P  P       GP  P
Sbjct: 690 QGPPGPQGSSGPQGHMGPQGPPGPQGHIGPQGPPGPQGHLGPQGPPGTQGMQGPPGP 746



 Score = 36.6 bits (83), Expect = 0.008
 Identities = 22/63 (34%), Positives = 23/63 (36%)

Query: 13  PHLQTPGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPVLP 72
           P  Q    P     P  P GP G IGP  P  P G +GP  P        P  P G   P
Sbjct: 693 PGPQGSSGPQGHMGPQGPPGPQGHIGPQGPPGPQGHLGPQGPPGTQGMQGPPGPRGMQGP 752

Query: 73  LKP 75
             P
Sbjct: 753 PHP 755



 Score = 35.0 bits (79), Expect = 0.023
 Identities = 20/55 (36%), Positives = 22/55 (40%), Gaps = 1/55 (1%)

Query: 14  HLQTPGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSG 68
           H+   G PG P   + P GP GP G   P  P G  G   P  P     P  P G
Sbjct: 704 HMGPQGPPG-PQGHIGPQGPPGPQGHLGPQGPPGTQGMQGPPGPRGMQGPPHPHG 757



 Score = 32.3 bits (72), Expect = 0.15
 Identities = 20/58 (34%), Positives = 20/58 (34%)

Query: 18  PGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPVLPLKP 75
           P  P  P     P G  GP GP  P    GP GP  P     P  P    G   P  P
Sbjct: 689 PQGPPGPQGSSGPQGHMGPQGPPGPQGHIGPQGPPGPQGHLGPQGPPGTQGMQGPPGP 746



 Score = 30.8 bits (68), Expect = 0.43
 Identities = 18/53 (33%), Positives = 21/53 (39%)

Query: 28  LSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPVLPLKPSERFP 80
           ++  GP GP G   P  P G MGP  P        P    GP  P  P +  P
Sbjct: 614 MAQMGPPGPQGQFRPPGPQGQMGPQGPPLHQGGGGPQGFMGPQGPQGPPQGLP 666



 Score = 29.6 bits (65), Expect = 0.96
 Identities = 23/73 (31%), Positives = 24/73 (32%), Gaps = 10/73 (13%)

Query: 13  PHLQTPGSPGSPCSPLSPFGPG----------GPIGPTSPFSPSGPMGPFFPVSPWSPFS 62
           P  Q  G P     P  P GP           GP G      P GP+GP  P  P     
Sbjct: 641 PLHQGGGGPQGFMGPQGPQGPPQGLPRPQDMHGPQGMQRHPGPHGPLGPQGPPGPQGSSG 700

Query: 63  PARPSGPVLPLKP 75
           P    GP  P  P
Sbjct: 701 PQGHMGPQGPPGP 713



 Score = 29.3 bits (64), Expect = 1.3
 Identities = 25/83 (30%), Positives = 27/83 (32%), Gaps = 16/83 (19%)

Query: 9   STMLPHLQTPGSPGSPCSPLSPFGPGGPIGPTSP------FSPSGPMGPFFPVSP----- 57
           S  +P       P  P     P GP G +GP  P        P G MGP  P  P     
Sbjct: 607 SQQMPMNMAQMGPPGPQGQFRPPGPQGQMGPQGPPLHQGGGGPQGFMGPQGPQGPPQGLP 666

Query: 58  -----WSPFSPARPSGPVLPLKP 75
                  P    R  GP  PL P
Sbjct: 667 RPQDMHGPQGMQRHPGPHGPLGP 689


>gi|239582763 ral guanine nucleotide dissociation stimulator-like 3
           isoform 2 [Homo sapiens]
          Length = 710

 Score = 41.2 bits (95), Expect = 3e-04
 Identities = 37/77 (48%), Positives = 39/77 (50%), Gaps = 16/77 (20%)

Query: 19  GSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGP--VLPLK-- 74
           GSPG P SP S   PG P  P+SP S   P G     SP  P SP  P GP   LPL   
Sbjct: 539 GSPGDPSSPTSSVSPGSP--PSSPRSRDAPAG-----SP--PASPG-PQGPSTKLPLSLD 588

Query: 75  -PSERFPFHLSLLSCRL 90
            PS R PF L L S R+
Sbjct: 589 LPSPR-PFALPLGSPRI 604


>gi|169175458 PREDICTED: similar to hCG2040468 [Homo sapiens]
          Length = 376

 Score = 40.8 bits (94), Expect = 4e-04
 Identities = 28/85 (32%), Positives = 41/85 (48%), Gaps = 12/85 (14%)

Query: 18  PGSPGSPCSPLSPFGPGGPI---GPTSPFSPSGPM------GPFFPVSPWSPFSPARPSG 68
           P +   P  PL+  GP  P+   GP  P + +GP+      GP  P++   P  P   +G
Sbjct: 84  PLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTG 143

Query: 69  PVLPLKPSERFPFHLSLLSCRLYHL 93
           P+ PL  ++  P H  LL C+  HL
Sbjct: 144 PLHPL--TDTGPLH-PLLLCQDPHL 165



 Score = 40.0 bits (92), Expect = 7e-04
 Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 2/65 (3%)

Query: 18 PGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPVLPLKPSE 77
          P +   P  PL+  GP  P+  T P  P    GP  P++   P  P   +GP+ PL  ++
Sbjct: 30 PLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPL--TD 87

Query: 78 RFPFH 82
            P H
Sbjct: 88 TGPLH 92



 Score = 40.0 bits (92), Expect = 7e-04
 Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 2/65 (3%)

Query: 18  PGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPVLPLKPSE 77
           P +   P  PL+  GP  P+  T P  P    GP  P++   P  P   +GP+ PL  ++
Sbjct: 39  PLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPL--TD 96

Query: 78  RFPFH 82
             P H
Sbjct: 97  TGPLH 101



 Score = 40.0 bits (92), Expect = 7e-04
 Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 2/65 (3%)

Query: 18  PGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPVLPLKPSE 77
           P +   P  PL+  GP  P+  T P  P    GP  P++   P  P   +GP+ PL  ++
Sbjct: 48  PLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPL--TD 105

Query: 78  RFPFH 82
             P H
Sbjct: 106 TGPLH 110



 Score = 40.0 bits (92), Expect = 7e-04
 Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 2/65 (3%)

Query: 18  PGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPVLPLKPSE 77
           P +   P  PL+  GP  P+  T P  P    GP  P++   P  P   +GP+ PL  ++
Sbjct: 57  PLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPL--TD 114

Query: 78  RFPFH 82
             P H
Sbjct: 115 TGPLH 119



 Score = 40.0 bits (92), Expect = 7e-04
 Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 2/65 (3%)

Query: 18  PGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPVLPLKPSE 77
           P +   P  PL+  GP  P+  T P  P    GP  P++   P  P   +GP+ PL  ++
Sbjct: 66  PLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPL--TD 123

Query: 78  RFPFH 82
             P H
Sbjct: 124 TGPLH 128



 Score = 40.0 bits (92), Expect = 7e-04
 Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 2/65 (3%)

Query: 18  PGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPVLPLKPSE 77
           P +   P  PL+  GP  P+  T P  P    GP  P++   P  P   +GP+ PL  ++
Sbjct: 75  PLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPL--TD 132

Query: 78  RFPFH 82
             P H
Sbjct: 133 TGPLH 137



 Score = 39.7 bits (91), Expect = 0.001
 Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 2/59 (3%)

Query: 24 PCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPVLPLKPSERFPFH 82
          P  PL+  GP  P+  T P  P    GP  P++   P  P   +GP+ PL  ++  P H
Sbjct: 27 PLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPL--TDTGPLH 83



 Score = 27.3 bits (59), Expect = 4.8
 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 4/54 (7%)

Query: 18  PGSPGSPCSPLSPFGPGGPI---GPTSPFSPSGPMGPFFPV-SPWSPFSPARPS 67
           P +   P  PL+  GP  P+   GP  P + +GP+ P      P  P + AR S
Sbjct: 120 PLTDTGPLHPLTDTGPLHPLTDTGPLHPLTDTGPLHPLLLCQDPHLPAAAARGS 173


>gi|48762934 alpha 2 type I collagen [Homo sapiens]
          Length = 1366

 Score = 40.4 bits (93), Expect = 5e-04
 Identities = 22/58 (37%), Positives = 24/58 (41%), Gaps = 2/58 (3%)

Query: 14   HLQTPGSPGS--PCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGP 69
            H    G PG+  P       GP GP+GP       G  GP  PV P     P  PSGP
Sbjct: 944  HKGERGYPGNIGPVGAAGAPGPHGPVGPAGKHGNRGETGPSGPVGPAGAVGPRGPSGP 1001



 Score = 39.3 bits (90), Expect = 0.001
 Identities = 24/64 (37%), Positives = 26/64 (40%), Gaps = 2/64 (3%)

Query: 14   HLQTPGSPGS--PCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPVL 71
            H    G+PGS  P  P  P GP GP G        G +GP     P     PA P GP  
Sbjct: 1037 HHGDQGAPGSVGPAGPRGPAGPSGPAGKDGRTGHPGTVGPAGIRGPQGHQGPAGPPGPPG 1096

Query: 72   PLKP 75
            P  P
Sbjct: 1097 PPGP 1100



 Score = 34.7 bits (78), Expect = 0.030
 Identities = 20/51 (39%), Positives = 23/51 (45%), Gaps = 4/51 (7%)

Query: 19  GSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGP 69
           GS GS    + P GP GPIG   P    G  GP   +       PA P+GP
Sbjct: 235 GSDGS----VGPVGPAGPIGSAGPPGFPGAPGPKGEIGAVGNAGPAGPAGP 281



 Score = 34.7 bits (78), Expect = 0.030
 Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 4/50 (8%)

Query: 19   GSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSG 68
            G+ G+P     P GP GP G       +GP GP  P     P  P+ P G
Sbjct: 958  GAAGAP----GPHGPVGPAGKHGNRGETGPSGPVGPAGAVGPRGPSGPQG 1003



 Score = 33.5 bits (75), Expect = 0.067
 Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 1/51 (1%)

Query: 18  PGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSG 68
           PG+ G   +   P G  G +GPT P   +GP GP  P  P        P G
Sbjct: 735 PGAKGERGAK-GPKGENGVVGPTGPVGAAGPAGPNGPPGPAGSRGDGGPPG 784



 Score = 32.7 bits (73), Expect = 0.11
 Identities = 15/37 (40%), Positives = 16/37 (43%)

Query: 32  GPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSG 68
           GP GP G   P   SG  GP  P+    P  P  P G
Sbjct: 583 GPAGPRGERGPPGESGAAGPTGPIGSRGPSGPPGPDG 619



 Score = 32.3 bits (72), Expect = 0.15
 Identities = 21/65 (32%), Positives = 21/65 (32%), Gaps = 12/65 (18%)

Query: 18  PGSPGSPCSPLSPFGPGGP------------IGPTSPFSPSGPMGPFFPVSPWSPFSPAR 65
           P  P  P  P    G GGP             GP  P   SGP GP  P        P  
Sbjct: 764 PAGPNGPPGPAGSRGDGGPPGMTGFPGAAGRTGPPGPSGISGPPGPPGPAGKEGLRGPRG 823

Query: 66  PSGPV 70
             GPV
Sbjct: 824 DQGPV 828



 Score = 32.0 bits (71), Expect = 0.19
 Identities = 20/50 (40%), Positives = 22/50 (44%), Gaps = 1/50 (2%)

Query: 19  GSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSG 68
           GS G P  P +P GP G IG      P+GP GP   V       P  P G
Sbjct: 250 GSAGPPGFPGAP-GPKGEIGAVGNAGPAGPAGPRGEVGLPGLSGPVGPPG 298



 Score = 31.6 bits (70), Expect = 0.25
 Identities = 22/70 (31%), Positives = 23/70 (32%), Gaps = 16/70 (22%)

Query: 18  PGSPGSPCSPLSPFGPGGPIG---------------PTSPFSPSGPMGPFFPVSPWSPFS 62
           PG PG    P  P GP G +G               P  P    GP G      P  P  
Sbjct: 549 PGPPGFQGLP-GPSGPAGEVGKPGERGLHGEFGLPGPAGPRGERGPPGESGAAGPTGPIG 607

Query: 63  PARPSGPVLP 72
              PSGP  P
Sbjct: 608 SRGPSGPPGP 617



 Score = 31.6 bits (70), Expect = 0.25
 Identities = 15/37 (40%), Positives = 15/37 (40%)

Query: 15  LQTPGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGP 51
           L  P  P     P    G  GP GP     PSGP GP
Sbjct: 581 LPGPAGPRGERGPPGESGAAGPTGPIGSRGPSGPPGP 617



 Score = 31.2 bits (69), Expect = 0.33
 Identities = 20/58 (34%), Positives = 20/58 (34%)

Query: 12  LPHLQTPGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGP 69
           LP    P     P       GP GPIG   P  P GP G             A PSGP
Sbjct: 581 LPGPAGPRGERGPPGESGAAGPTGPIGSRGPSGPPGPDGNKGEPGVVGAVGTAGPSGP 638



 Score = 30.4 bits (67), Expect = 0.57
 Identities = 18/50 (36%), Positives = 20/50 (40%), Gaps = 1/50 (2%)

Query: 19  GSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSG 68
           G+PG P       G  G  GP  P  P G  G    V P  P   A P+G
Sbjct: 682 GAPG-PAGATGDRGEAGAAGPAGPAGPRGSPGERGEVGPAGPNGFAGPAG 730



 Score = 30.4 bits (67), Expect = 0.57
 Identities = 17/55 (30%), Positives = 18/55 (32%)

Query: 18  PGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPVLP 72
           P  P     P    G  G  G      P G  G   P  P     PA P+GP  P
Sbjct: 719 PAGPNGFAGPAGAAGQPGAKGERGAKGPKGENGVVGPTGPVGAAGPAGPNGPPGP 773



 Score = 30.0 bits (66), Expect = 0.74
 Identities = 21/66 (31%), Positives = 24/66 (36%), Gaps = 16/66 (24%)

Query: 19  GSPGSPCSPLSPFGPGGPIGPT---------------SPFSPSGPMGPFFPVSPWSPFSP 63
           GSPG     + P GP G  GP                 P   +G +GP  PV    P  P
Sbjct: 709 GSPGER-GEVGPAGPNGFAGPAGAAGQPGAKGERGAKGPKGENGVVGPTGPVGAAGPAGP 767

Query: 64  ARPSGP 69
             P GP
Sbjct: 768 NGPPGP 773



 Score = 30.0 bits (66), Expect = 0.74
 Identities = 18/56 (32%), Positives = 20/56 (35%)

Query: 21  PGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPVLPLKPS 76
           P  P     P G  G  G        GP G    V P  P   A P+GP  P  P+
Sbjct: 719 PAGPNGFAGPAGAAGQPGAKGERGAKGPKGENGVVGPTGPVGAAGPAGPNGPPGPA 774



 Score = 29.6 bits (65), Expect = 0.96
 Identities = 15/38 (39%), Positives = 15/38 (39%)

Query: 32 GPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGP 69
          GP G  GP     P GP G      P  P  P  P GP
Sbjct: 33 GPAGDRGPRGERGPPGPPGRDGEDGPTGPPGPPGPPGP 70



 Score = 29.3 bits (64), Expect = 1.3
 Identities = 14/31 (45%), Positives = 14/31 (45%)

Query: 21 PGSPCSPLSPFGPGGPIGPTSPFSPSGPMGP 51
          P     P  P G  G  GPT P  P GP GP
Sbjct: 40 PRGERGPPGPPGRDGEDGPTGPPGPPGPPGP 70



 Score = 29.3 bits (64), Expect = 1.3
 Identities = 18/52 (34%), Positives = 20/52 (38%), Gaps = 4/52 (7%)

Query: 17  TPGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSG 68
           TPG  G+   P    G  G +G   P    G  G   PV P  P   A P G
Sbjct: 209 TPGQTGARGLP----GERGRVGAPGPAGARGSDGSVGPVGPAGPIGSAGPPG 256



 Score = 29.3 bits (64), Expect = 1.3
 Identities = 11/24 (45%), Positives = 12/24 (50%)

Query: 27   PLSPFGPGGPIGPTSPFSPSGPMG 50
            P  P GP G +GP  P  P G  G
Sbjct: 983  PSGPVGPAGAVGPRGPSGPQGIRG 1006



 Score = 28.9 bits (63), Expect = 1.6
 Identities = 20/61 (32%), Positives = 24/61 (39%), Gaps = 6/61 (9%)

Query: 18  PGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPVLPLKPSE 77
           PG+ G+P     P G  GP G       +GP G   P  P  P        P  P +P E
Sbjct: 102 PGAAGAP----GPQGFQGPAGEPGEPGQTGPAGARGPAGP--PGKAGEDGHPGKPGRPGE 155

Query: 78  R 78
           R
Sbjct: 156 R 156



 Score = 28.9 bits (63), Expect = 1.6
 Identities = 16/47 (34%), Positives = 18/47 (38%), Gaps = 1/47 (2%)

Query: 18  PGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPA 64
           PG  G+   P  P G  GP GP  P    G  G    V    P  P+
Sbjct: 594 PGESGA-AGPTGPIGSRGPSGPPGPDGNKGEPGVVGAVGTAGPSGPS 639



 Score = 28.5 bits (62), Expect = 2.1
 Identities = 15/35 (42%), Positives = 16/35 (45%), Gaps = 2/35 (5%)

Query: 19  GSPGS--PCSPLSPFGPGGPIGPTSPFSPSGPMGP 51
           G PGS  P  P  P G  G  GP      +GP GP
Sbjct: 361 GEPGSAGPQGPPGPSGEEGKRGPNGEAGSAGPPGP 395



 Score = 28.5 bits (62), Expect = 2.1
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 4/34 (11%)

Query: 18  PGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGP 51
           PGSPG+    + P G  GP+G        GP+GP
Sbjct: 453 PGSPGN----IGPAGKEGPVGLPGIDGRPGPIGP 482



 Score = 28.5 bits (62), Expect = 2.1
 Identities = 18/50 (36%), Positives = 20/50 (40%), Gaps = 1/50 (2%)

Query: 19  GSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSG 68
           G PG       P GP G  GP+ P  P G  G    V       P+ PSG
Sbjct: 592 GPPGES-GAAGPTGPIGSRGPSGPPGPDGNKGEPGVVGAVGTAGPSGPSG 640



 Score = 28.1 bits (61), Expect = 2.8
 Identities = 14/37 (37%), Positives = 15/37 (40%)

Query: 21 PGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSP 57
          P     P    GP GP G      P+GP GP  P  P
Sbjct: 34 PAGDRGPRGERGPPGPPGRDGEDGPTGPPGPPGPPGP 70



 Score = 27.7 bits (60), Expect = 3.7
 Identities = 15/39 (38%), Positives = 15/39 (38%)

Query: 30 PFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSG 68
          P G  GP G   P  P G  G   P  P  P  P  P G
Sbjct: 34 PAGDRGPRGERGPPGPPGRDGEDGPTGPPGPPGPPGPPG 72



 Score = 27.7 bits (60), Expect = 3.7
 Identities = 14/37 (37%), Positives = 14/37 (37%)

Query: 24 PCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSP 60
          P     P G  GP GP       GP GP  P  P  P
Sbjct: 34 PAGDRGPRGERGPPGPPGRDGEDGPTGPPGPPGPPGP 70



 Score = 27.7 bits (60), Expect = 3.7
 Identities = 16/51 (31%), Positives = 21/51 (41%), Gaps = 4/51 (7%)

Query: 19  GSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGP 69
           G+PG+  +P    GP G  G       +GP GP  P           P+GP
Sbjct: 676 GAPGAVGAP----GPAGATGDRGEAGAAGPAGPAGPRGSPGERGEVGPAGP 722



 Score = 27.7 bits (60), Expect = 3.7
 Identities = 17/52 (32%), Positives = 18/52 (34%)

Query: 18  PGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGP 69
           P  P     P  P GP G  G   P    GP+G    V    P   A   GP
Sbjct: 797 PPGPSGISGPPGPPGPAGKEGLRGPRGDQGPVGRTGEVGAVGPPGFAGEKGP 848



 Score = 27.3 bits (59), Expect = 4.8
 Identities = 13/34 (38%), Positives = 13/34 (38%)

Query: 18 PGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGP 51
          P     P     P GP G  G   P  P GP GP
Sbjct: 34 PAGDRGPRGERGPPGPPGRDGEDGPTGPPGPPGP 67



 Score = 27.3 bits (59), Expect = 4.8
 Identities = 14/33 (42%), Positives = 14/33 (42%), Gaps = 7/33 (21%)

Query: 18 PGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMG 50
          PG PG         G  GP GP  P  P GP G
Sbjct: 47 PGPPGRD-------GEDGPTGPPGPPGPPGPPG 72



 Score = 27.3 bits (59), Expect = 4.8
 Identities = 17/56 (30%), Positives = 20/56 (35%), Gaps = 5/56 (8%)

Query: 18  PGSPGSP-----CSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSG 68
           PG+ G+P            G  GP GP  P    G  G   P  P     PA  +G
Sbjct: 678 PGAVGAPGPAGATGDRGEAGAAGPAGPAGPRGSPGERGEVGPAGPNGFAGPAGAAG 733



 Score = 26.9 bits (58), Expect = 6.2
 Identities = 19/58 (32%), Positives = 22/58 (37%), Gaps = 1/58 (1%)

Query: 18  PGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPVLPLKP 75
           PG  G P       GP GP G + P  P GP G      P     P   +G V  + P
Sbjct: 783 PGMTGFP-GAAGRTGPPGPSGISGPPGPPGPAGKEGLRGPRGDQGPVGRTGEVGAVGP 839



 Score = 26.9 bits (58), Expect = 6.2
 Identities = 12/34 (35%), Positives = 13/34 (38%)

Query: 18   PGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGP 51
            P  P  P   + P GP GP G        G  GP
Sbjct: 983  PSGPVGPAGAVGPRGPSGPQGIRGDKGEPGEKGP 1016



 Score = 26.6 bits (57), Expect = 8.2
 Identities = 22/65 (33%), Positives = 26/65 (40%), Gaps = 3/65 (4%)

Query: 14  HLQTPGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPVLPL 73
           H    G+ G+P  P    G  GP GP       G  GP  P        P+ P+G V   
Sbjct: 512 HAGLAGARGAP-GPDGNNGAQGPPGPQGVQGGKGEQGPPGPPGFQGLPGPSGPAGEV--G 568

Query: 74  KPSER 78
           KP ER
Sbjct: 569 KPGER 573



 Score = 26.6 bits (57), Expect = 8.2
 Identities = 20/57 (35%), Positives = 24/57 (42%), Gaps = 7/57 (12%)

Query: 18  PGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSP-WSP-----FSPARPSG 68
           PG  G+  +P    G  GP G T     +G  GP  P  P  SP       PA P+G
Sbjct: 669 PGRDGARGAP-GAVGAPGPAGATGDRGEAGAAGPAGPAGPRGSPGERGEVGPAGPNG 724


>gi|4505939 DNA-directed RNA polymerase II A [Homo sapiens]
          Length = 1970

 Score = 40.4 bits (93), Expect = 5e-04
 Identities = 30/62 (48%), Positives = 37/62 (59%), Gaps = 11/62 (17%)

Query: 17   TPGSPGSPCSPLSPF--GPGGPI----GPTSP-FSPSGPMGPFFPVSP-WSPFSPA-RPS 67
            TPGSPGSP  P SP+   PGG +     PTSP + P  P G + P SP +SP SP+  P+
Sbjct: 1568 TPGSPGSP-GPSSPYIPSPGGAMSPSYSPTSPAYEPRSP-GGYTPQSPSYSPTSPSYSPT 1625

Query: 68   GP 69
             P
Sbjct: 1626 SP 1627


>gi|18105032 type X collagen alpha 1 precursor [Homo sapiens]
          Length = 680

 Score = 40.4 bits (93), Expect = 5e-04
 Identities = 25/65 (38%), Positives = 31/65 (47%), Gaps = 11/65 (16%)

Query: 18  PGSPGSPCSP--LSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPVLPLKP 75
           PG PG P  P    P+GP G +GP     P GP GP        P  P  P+G  +P KP
Sbjct: 108 PGVPGLPGKPGERGPYGPKGDVGPAGLPGPRGPPGP--------PGIPG-PAGISVPGKP 158

Query: 76  SERFP 80
            ++ P
Sbjct: 159 GQQGP 163



 Score = 38.1 bits (87), Expect = 0.003
 Identities = 27/75 (36%), Positives = 31/75 (41%), Gaps = 20/75 (26%)

Query: 19  GSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMG------------PFFPVSPWSPFSPARP 66
           G  G+P       GP GP GP     PSGP G            P  P  P  P +  +P
Sbjct: 57  GEQGTP-------GPPGPAGPRGHPGPSGPPGKPGYGSPGLQGEPGLP-GPPGPSAVGKP 108

Query: 67  SGPVLPLKPSERFPF 81
             P LP KP ER P+
Sbjct: 109 GVPGLPGKPGERGPY 123



 Score = 35.4 bits (80), Expect = 0.018
 Identities = 25/66 (37%), Positives = 26/66 (39%), Gaps = 11/66 (16%)

Query: 18  PGSPGSPCSPLSPFGPGGP----------IGPTSPFSPSGPMG-PFFPVSPWSPFSPARP 66
           PG PG P S   P  PG P           GPT P  P GP G    P  P  P  P  P
Sbjct: 457 PGIPGFPGSKGDPGSPGPPGPAGIATKGLNGPTGPPGPPGPRGHSGEPGLPGPPGPPGPP 516

Query: 67  SGPVLP 72
              V+P
Sbjct: 517 GQAVMP 522



 Score = 33.1 bits (74), Expect = 0.087
 Identities = 20/52 (38%), Positives = 23/52 (44%), Gaps = 1/52 (1%)

Query: 18  PGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGP 69
           PG PG       P G  GPIGP  P  P G  GP     P +  +P +P  P
Sbjct: 228 PGQPGIKGDRGFP-GEMGPIGPPGPQGPPGERGPEGIGKPGAAGAPGQPGIP 278



 Score = 28.5 bits (62), Expect = 2.1
 Identities = 22/66 (33%), Positives = 26/66 (39%), Gaps = 10/66 (15%)

Query: 18  PGSPG--SPCSPLSPFGPGGPIG------PTSPFSPSGPMGPFFPVSPWSPFSPARPSGP 69
           PG PG   P   + P GP G  G      P     P+GP G  +P +     SP     P
Sbjct: 331 PGKPGLTGPPGNMGPQGPKGIPGSHGLPGPKGETGPAGPAG--YPGAKGERGSPGSDGKP 388

Query: 70  VLPLKP 75
             P KP
Sbjct: 389 GYPGKP 394



 Score = 28.1 bits (61), Expect = 2.8
 Identities = 17/39 (43%), Positives = 19/39 (48%), Gaps = 2/39 (5%)

Query: 13  PHLQTP-GSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMG 50
           P L  P G+PG P  P    G GGP G   P  P+G  G
Sbjct: 394 PGLDGPKGNPGLP-GPKGDPGVGGPPGLPGPVGPAGAKG 431



 Score = 26.9 bits (58), Expect = 6.2
 Identities = 23/68 (33%), Positives = 24/68 (35%), Gaps = 18/68 (26%)

Query: 18  PGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMG----------------PFFPVSPWSPF 61
           PG  G P  P  P GP G  G       +GP G                P FP S   P 
Sbjct: 412 PGVGGPPGLP-GPVGPAGAKGMPGHNGEAGPRGAPGIPGTRGPIGPPGIPGFPGSKGDPG 470

Query: 62  SPARPSGP 69
           SP  P GP
Sbjct: 471 SPG-PPGP 477



 Score = 26.6 bits (57), Expect = 8.2
 Identities = 25/79 (31%), Positives = 26/79 (32%), Gaps = 29/79 (36%)

Query: 19  GSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMG---------PFFP--------VSPWSPF 61
           G+PG P       G  G  GP  P  PSGP G         P  P             P 
Sbjct: 194 GAPGRP-------GERGLPGPQGPTGPSGPPGVGKRGENGVPGQPGIKGDRGFPGEMGPI 246

Query: 62  SPARPSGPVLPLKPSERFP 80
            P  P GP     P ER P
Sbjct: 247 GPPGPQGP-----PGERGP 260


>gi|194248060 outer dense fiber of sperm tails 1 [Homo sapiens]
          Length = 250

 Score = 40.4 bits (93), Expect = 5e-04
 Identities = 17/32 (53%), Positives = 18/32 (56%)

Query: 20  SPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGP 51
           SP SPCSP SP  P  P  P SP+ P  P  P
Sbjct: 207 SPCSPCSPCSPCNPCSPCNPCSPYDPCNPCYP 238



 Score = 39.3 bits (90), Expect = 0.001
 Identities = 19/46 (41%), Positives = 22/46 (47%), Gaps = 5/46 (10%)

Query: 23  SPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSG 68
           SPC P +      P  P SP SP  P  P  P SP+ P +P  P G
Sbjct: 200 SPCYPCT-----SPCSPCSPCSPCNPCSPCNPCSPYDPCNPCYPCG 240



 Score = 38.1 bits (87), Expect = 0.003
 Identities = 17/37 (45%), Positives = 20/37 (54%)

Query: 17  TPGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFF 53
           +P SP SPCSP +P  P  P  P  P +P  P G  F
Sbjct: 207 SPCSPCSPCSPCNPCSPCNPCSPYDPCNPCYPCGSRF 243


>gi|38570075 collagen, type XXV, alpha 1 isoform 1 [Homo sapiens]
          Length = 654

 Score = 40.4 bits (93), Expect = 5e-04
 Identities = 23/52 (44%), Positives = 24/52 (46%), Gaps = 3/52 (5%)

Query: 19  GSPGSPCSP--LSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSG 68
           G PG P  P  + P GP GP GP  P  P G  GP     P  P  PA P G
Sbjct: 518 GMPG-PQGPSIIGPPGPPGPHGPPGPMGPHGLPGPKGTDGPMGPHGPAGPKG 568



 Score = 38.9 bits (89), Expect = 0.002
 Identities = 25/60 (41%), Positives = 27/60 (45%), Gaps = 6/60 (10%)

Query: 1   MPTEKADLSTMLPHLQTPGSPGSPCSPLSPFGPGGPIGP---TSPFSPSGPMGPFFPVSP 57
           M  EK D    +P  Q P   G P  P  P GP GP+GP     P    GPMGP  P  P
Sbjct: 510 MKGEKGDSG--MPGPQGPSIIGPP-GPPGPHGPPGPMGPHGLPGPKGTDGPMGPHGPAGP 566



 Score = 38.5 bits (88), Expect = 0.002
 Identities = 23/56 (41%), Positives = 23/56 (41%), Gaps = 6/56 (10%)

Query: 19  GSPGSPCSPLSPFGPG--GPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPVLP 72
           G  G P     P GP   GP GP  P  P GPMGP     P     P  P GP  P
Sbjct: 515 GDSGMP----GPQGPSIIGPPGPPGPHGPPGPMGPHGLPGPKGTDGPMGPHGPAGP 566



 Score = 38.1 bits (87), Expect = 0.003
 Identities = 25/68 (36%), Positives = 29/68 (42%), Gaps = 2/68 (2%)

Query: 18  PGSPG-SPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPVLPL-KP 75
           PG  G S   P  P GP GP GP  P    GP G   P+ P  P  P    G    + +P
Sbjct: 520 PGPQGPSIIGPPGPPGPHGPPGPMGPHGLPGPKGTDGPMGPHGPAGPKGERGEKGAMGEP 579

Query: 76  SERFPFHL 83
             R P+ L
Sbjct: 580 GPRGPYGL 587



 Score = 29.6 bits (65), Expect = 0.96
 Identities = 16/43 (37%), Positives = 17/43 (39%), Gaps = 1/43 (2%)

Query: 11  MLPH-LQTPGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPF 52
           M PH L  P     P  P  P GP G  G        GP GP+
Sbjct: 543 MGPHGLPGPKGTDGPMGPHGPAGPKGERGEKGAMGEPGPRGPY 585



 Score = 28.9 bits (63), Expect = 1.6
 Identities = 19/49 (38%), Positives = 20/49 (40%), Gaps = 3/49 (6%)

Query: 27  PLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPVLPLKP 75
           P  P GP GP GP       GP G   P  P  P  P    G + PL P
Sbjct: 196 PPGPPGPPGPRGPPGDTGKDGPRG--MPGVPGEPGKPGE-QGLMGPLGP 241



 Score = 27.3 bits (59), Expect = 4.8
 Identities = 17/47 (36%), Positives = 18/47 (38%), Gaps = 2/47 (4%)

Query: 32  GPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPVLPLKPSER 78
           G  G  GP  P  P GP GP  P           P  P  P KP E+
Sbjct: 189 GDQGQAGPPGPPGPPGPRGP--PGDTGKDGPRGMPGVPGEPGKPGEQ 233


>gi|38570073 collagen, type XXV, alpha 1 isoform 2 [Homo sapiens]
          Length = 642

 Score = 40.4 bits (93), Expect = 5e-04
 Identities = 23/52 (44%), Positives = 24/52 (46%), Gaps = 3/52 (5%)

Query: 19  GSPGSPCSP--LSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSG 68
           G PG P  P  + P GP GP GP  P  P G  GP     P  P  PA P G
Sbjct: 518 GMPG-PQGPSIIGPPGPPGPHGPPGPMGPHGLPGPKGTDGPMGPHGPAGPKG 568



 Score = 38.9 bits (89), Expect = 0.002
 Identities = 25/60 (41%), Positives = 27/60 (45%), Gaps = 6/60 (10%)

Query: 1   MPTEKADLSTMLPHLQTPGSPGSPCSPLSPFGPGGPIGP---TSPFSPSGPMGPFFPVSP 57
           M  EK D    +P  Q P   G P  P  P GP GP+GP     P    GPMGP  P  P
Sbjct: 510 MKGEKGDSG--MPGPQGPSIIGPP-GPPGPHGPPGPMGPHGLPGPKGTDGPMGPHGPAGP 566



 Score = 38.5 bits (88), Expect = 0.002
 Identities = 23/56 (41%), Positives = 23/56 (41%), Gaps = 6/56 (10%)

Query: 19  GSPGSPCSPLSPFGPG--GPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPVLP 72
           G  G P     P GP   GP GP  P  P GPMGP     P     P  P GP  P
Sbjct: 515 GDSGMP----GPQGPSIIGPPGPPGPHGPPGPMGPHGLPGPKGTDGPMGPHGPAGP 566



 Score = 38.1 bits (87), Expect = 0.003
 Identities = 25/68 (36%), Positives = 29/68 (42%), Gaps = 2/68 (2%)

Query: 18  PGSPG-SPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPVLPL-KP 75
           PG  G S   P  P GP GP GP  P    GP G   P+ P  P  P    G    + +P
Sbjct: 520 PGPQGPSIIGPPGPPGPHGPPGPMGPHGLPGPKGTDGPMGPHGPAGPKGERGEKGAMGEP 579

Query: 76  SERFPFHL 83
             R P+ L
Sbjct: 580 GPRGPYGL 587



 Score = 29.6 bits (65), Expect = 0.96
 Identities = 16/43 (37%), Positives = 17/43 (39%), Gaps = 1/43 (2%)

Query: 11  MLPH-LQTPGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPF 52
           M PH L  P     P  P  P GP G  G        GP GP+
Sbjct: 543 MGPHGLPGPKGTDGPMGPHGPAGPKGERGEKGAMGEPGPRGPY 585



 Score = 28.9 bits (63), Expect = 1.6
 Identities = 19/49 (38%), Positives = 20/49 (40%), Gaps = 3/49 (6%)

Query: 27  PLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPVLPLKP 75
           P  P GP GP GP       GP G   P  P  P  P    G + PL P
Sbjct: 196 PPGPPGPPGPRGPPGDTGKDGPRG--MPGVPGEPGKPGE-QGLMGPLGP 241



 Score = 27.3 bits (59), Expect = 4.8
 Identities = 17/47 (36%), Positives = 18/47 (38%), Gaps = 2/47 (4%)

Query: 32  GPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPVLPLKPSER 78
           G  G  GP  P  P GP GP  P           P  P  P KP E+
Sbjct: 189 GDQGQAGPPGPPGPPGPRGP--PGDTGKDGPRGMPGVPGEPGKPGEQ 233


>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
          Length = 1466

 Score = 40.0 bits (92), Expect = 7e-04
 Identities = 28/88 (31%), Positives = 33/88 (37%), Gaps = 21/88 (23%)

Query: 14   HLQTPGSPGSPCSP-----------LSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSP-- 60
            H   PG+PG+P SP             P GP GP+GP+ P    G  G   P+ P  P  
Sbjct: 1108 HRGFPGNPGAPGSPGPAGQQGAIGSPGPAGPRGPVGPSGPPGKDGTSGHPGPIGPPGPRG 1167

Query: 61   --------FSPARPSGPVLPLKPSERFP 80
                     SP  P  P  P  P    P
Sbjct: 1168 NRGERGSEGSPGHPGQPGPPGPPGAPGP 1195



 Score = 39.3 bits (90), Expect = 0.001
 Identities = 21/53 (39%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 17   TPGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGP 69
            +PG+PG+P  P  P GP GP G +     SGP GP     P        P GP
Sbjct: 1039 SPGAPGAPGHP-GPPGPVGPAGKSGDRGESGPAGPAGAPGPAGSRGAPGPQGP 1090



 Score = 38.5 bits (88), Expect = 0.002
 Identities = 26/62 (41%), Positives = 28/62 (45%), Gaps = 6/62 (9%)

Query: 17  TPGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPVLPLKPS 76
           T G PGSP SP    G  GP G      PSGP GP   + P  P      SG   P +P 
Sbjct: 187 TSGHPGSPGSP----GYQGPPGEPGQAGPSGPPGPPGAIGPSGPAGKDGESG--RPGRPG 240

Query: 77  ER 78
           ER
Sbjct: 241 ER 242



 Score = 38.5 bits (88), Expect = 0.002
 Identities = 21/54 (38%), Positives = 24/54 (44%), Gaps = 1/54 (1%)

Query: 19   GSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPVLP 72
            GSPG+P +P  P GP GP+GP       G  GP  P     P       GP  P
Sbjct: 1038 GSPGAPGAPGHP-GPPGPVGPAGKSGDRGESGPAGPAGAPGPAGSRGAPGPQGP 1090



 Score = 35.4 bits (80), Expect = 0.018
 Identities = 25/74 (33%), Positives = 27/74 (36%), Gaps = 22/74 (29%)

Query: 18  PGSPGSP-----------CSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARP 66
           PGSPGSP             P  P GP G IGP+ P    G  G            P RP
Sbjct: 191 PGSPGSPGYQGPPGEPGQAGPSGPPGPPGAIGPSGPAGKDGESG-----------RPGRP 239

Query: 67  SGPVLPLKPSERFP 80
               LP  P  + P
Sbjct: 240 GERGLPGPPGIKGP 253



 Score = 35.4 bits (80), Expect = 0.018
 Identities = 21/50 (42%), Positives = 24/50 (48%), Gaps = 2/50 (4%)

Query: 1   MPTEKADLSTMLPHLQTPGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMG 50
           MP E+  L +  P     G PG P +   P G  GP GPT P  P GP G
Sbjct: 727 MPGERGGLGSPGPK-GDKGEPGGPGADGVP-GKDGPRGPTGPIGPPGPAG 774



 Score = 35.4 bits (80), Expect = 0.018
 Identities = 19/51 (37%), Positives = 21/51 (41%), Gaps = 1/51 (1%)

Query: 18   PGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSG 68
            PG+PG P  P  P GP G  G      P+GP G   P        P  P G
Sbjct: 1043 PGAPGHP-GPPGPVGPAGKSGDRGESGPAGPAGAPGPAGSRGAPGPQGPRG 1092



 Score = 33.9 bits (76), Expect = 0.051
 Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 1/54 (1%)

Query: 19  GSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPVLP 72
           G+ G+P       GPGGP GP  P   +G  GP  P  P  P      +GP  P
Sbjct: 585 GNDGAPGKNGERGGPGGP-GPQGPPGKNGETGPQGPPGPTGPGGDKGDTGPPGP 637



 Score = 32.7 bits (73), Expect = 0.11
 Identities = 24/66 (36%), Positives = 28/66 (42%), Gaps = 16/66 (24%)

Query: 18  PGSPGSPCSPLSPFGPG--------GPIGPTSPFSPSGPMGPFFPVSPWSPFSPAR---- 65
           PGSPG P S   P  PG        GP GP+ P    G MG  FP    +  +P +    
Sbjct: 539 PGSPGGPGSDGKPGPPGSQGESGRPGPPGPSGPRGQPGVMG--FPGPKGNDGAPGKNGER 596

Query: 66  --PSGP 69
             P GP
Sbjct: 597 GGPGGP 602



 Score = 32.7 bits (73), Expect = 0.11
 Identities = 19/51 (37%), Positives = 19/51 (37%), Gaps = 1/51 (1%)

Query: 18  PGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSG 68
           PG  G    P  P GP GP G      P GP GP  P        P  P G
Sbjct: 590 PGKNGERGGPGGP-GPQGPPGKNGETGPQGPPGPTGPGGDKGDTGPPGPQG 639



 Score = 31.6 bits (70), Expect = 0.25
 Identities = 20/51 (39%), Positives = 22/51 (43%), Gaps = 2/51 (3%)

Query: 16  QTPGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARP 66
           Q P +P  P +   P GP G  GP  P  P     P  P  P SP SP  P
Sbjct: 90  QPPTAPTRPPNGQGPQGPKGDPGP--PGIPGRNGDPGIPGQPGSPGSPGPP 138



 Score = 31.6 bits (70), Expect = 0.25
 Identities = 28/91 (30%), Positives = 32/91 (35%), Gaps = 30/91 (32%)

Query: 18  PGSPGSPCSPLSPFGPG----GPIGPTS------------------------PFSPSGPM 49
           PG PG P SP SP  PG     P GP +                        P  P GP 
Sbjct: 123 PGIPGQPGSPGSPGPPGICESCPTGPQNYSPQYDSYDVKSGVAVGGLAGYPGPAGPPGPP 182

Query: 50  GPFFPVSPWSPFSPARPSGPVLPLKPSERFP 80
           GP  P +   P SP  P     P +P +  P
Sbjct: 183 GP--PGTSGHPGSPGSPGYQGPPGEPGQAGP 211



 Score = 31.6 bits (70), Expect = 0.25
 Identities = 20/54 (37%), Positives = 22/54 (40%), Gaps = 4/54 (7%)

Query: 18  PGSPGS--PCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGP 69
           PG  G   P  P  P GPGG  G T P  P G  G   P +   P    +P  P
Sbjct: 608 PGKNGETGPQGPPGPTGPGGDKGDTGPPGPQGLQG--LPGTGGPPGENGKPGEP 659



 Score = 31.6 bits (70), Expect = 0.25
 Identities = 22/64 (34%), Positives = 23/64 (35%), Gaps = 5/64 (7%)

Query: 17   TPGSPGSPCSPLSPFGPG-----GPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPVL 71
            +PG  G      SP  PG     GP GP  P   SG  G   P  P     PA   G   
Sbjct: 1027 SPGGKGDRGENGSPGAPGAPGHPGPPGPVGPAGKSGDRGESGPAGPAGAPGPAGSRGAPG 1086

Query: 72   PLKP 75
            P  P
Sbjct: 1087 PQGP 1090



 Score = 31.2 bits (69), Expect = 0.33
 Identities = 19/42 (45%), Positives = 19/42 (45%), Gaps = 2/42 (4%)

Query: 18  PGSPGSPCSPLSPFGPG--GPIGPTSPFSPSGPMGPFFPVSP 57
           PG PG    P SP GPG  G  GP      SG  GP  P  P
Sbjct: 530 PGGPGMRGMPGSPGGPGSDGKPGPPGSQGESGRPGPPGPSGP 571



 Score = 30.8 bits (68), Expect = 0.43
 Identities = 20/56 (35%), Positives = 24/56 (42%), Gaps = 8/56 (14%)

Query: 26  SPLSPFG------PGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPVLPLKP 75
           +P  PFG      P  P  PT P +  GP GP     P  P  P R   P +P +P
Sbjct: 76  NPEIPFGECCAVCPQPPTAPTRPPNGQGPQGP--KGDPGPPGIPGRNGDPGIPGQP 129



 Score = 30.8 bits (68), Expect = 0.43
 Identities = 17/38 (44%), Positives = 17/38 (44%), Gaps = 5/38 (13%)

Query: 19  GSPGSPCSPLSPFGPG-----GPIGPTSPFSPSGPMGP 51
           GSPG       P GPG     G  GP  P  P GP GP
Sbjct: 735 GSPGPKGDKGEPGGPGADGVPGKDGPRGPTGPIGPPGP 772



 Score = 29.6 bits (65), Expect = 0.96
 Identities = 23/65 (35%), Positives = 25/65 (38%), Gaps = 8/65 (12%)

Query: 18  PGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPV-------SPWSPFSPARPSGPV 70
           PG  G   +P    G GGP G   P   SGP GP  P        SP  P +   P    
Sbjct: 821 PGGKGERGAP-GEKGEGGPPGVAGPPGGSGPAGPPGPQGVKGERGSPGGPGAAGFPGARG 879

Query: 71  LPLKP 75
           LP  P
Sbjct: 880 LPGPP 884



 Score = 29.6 bits (65), Expect = 0.96
 Identities = 22/57 (38%), Positives = 23/57 (40%), Gaps = 2/57 (3%)

Query: 18   PGSPGSPCSPLSPFGPGGPIGPTSPFSPSGP--MGPFFPVSPWSPFSPARPSGPVLP 72
            PGS G P    SP G G      SP +P  P   GP  PV P         SGP  P
Sbjct: 1016 PGSDGLPGRDGSPGGKGDRGENGSPGAPGAPGHPGPPGPVGPAGKSGDRGESGPAGP 1072



 Score = 29.3 bits (64), Expect = 1.3
 Identities = 21/52 (40%), Positives = 24/52 (46%), Gaps = 10/52 (19%)

Query: 18  PGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGP 69
           PG PGS  +P    GP GP G      P GP G     +  +P SP   SGP
Sbjct: 881 PGPPGSNGNP----GPPGPSGSPGKDGPPGPAG-----NTGAPGSPG-VSGP 922



 Score = 28.1 bits (61), Expect = 2.8
 Identities = 21/58 (36%), Positives = 22/58 (37%), Gaps = 8/58 (13%)

Query: 19  GSPGSPCSPLSPFG-------PGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGP 69
           G+PG P  P    G       PGGP     P SP GP     P  P S     RP  P
Sbjct: 510 GAPG-PAGPRGAAGEPGRDGVPGGPGMRGMPGSPGGPGSDGKPGPPGSQGESGRPGPP 566



 Score = 28.1 bits (61), Expect = 2.8
 Identities = 14/38 (36%), Positives = 14/38 (36%)

Query: 13  PHLQTPGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMG 50
           P  Q P        P  P GP GP G      P GP G
Sbjct: 602 PGPQGPPGKNGETGPQGPPGPTGPGGDKGDTGPPGPQG 639



 Score = 28.1 bits (61), Expect = 2.8
 Identities = 22/77 (28%), Positives = 27/77 (35%), Gaps = 18/77 (23%)

Query: 18   PGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPF-------FPVSPWSPFSPA------ 64
            P  P     P    G  GP GP      +G  G         FP +P +P SP       
Sbjct: 1069 PAGPAGAPGPAGSRGAPGPQGPRGDKGETGERGAAGIKGHRGFPGNPGAPGSPGPAGQQG 1128

Query: 65   -----RPSGPVLPLKPS 76
                  P+GP  P+ PS
Sbjct: 1129 AIGSPGPAGPRGPVGPS 1145



 Score = 27.7 bits (60), Expect = 3.7
 Identities = 19/50 (38%), Positives = 20/50 (40%), Gaps = 1/50 (2%)

Query: 19   GSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSG 68
            G+PGS   P     PGG        SP  P  P  P  P  P  PA  SG
Sbjct: 1014 GNPGSDGLPGRDGSPGGKGDRGENGSPGAPGAPGHP-GPPGPVGPAGKSG 1062



 Score = 27.3 bits (59), Expect = 4.8
 Identities = 15/34 (44%), Positives = 17/34 (50%), Gaps = 1/34 (2%)

Query: 18  PGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGP 51
           PG+ G P  P S   PG P GP+      GP GP
Sbjct: 875 PGARGLPGPPGSNGNPGPP-GPSGSPGKDGPPGP 907



 Score = 26.9 bits (58), Expect = 6.2
 Identities = 17/38 (44%), Positives = 17/38 (44%), Gaps = 4/38 (10%)

Query: 18  PGSPGSPCSPLSPFGPGGPIGPTSPFSP----SGPMGP 51
           PG PG P     P  PG P  P SP  P    S P GP
Sbjct: 111 PGPPGIPGRNGDPGIPGQPGSPGSPGPPGICESCPTGP 148



 Score = 26.9 bits (58), Expect = 6.2
 Identities = 19/67 (28%), Positives = 21/67 (31%), Gaps = 10/67 (14%)

Query: 13  PHLQTPGSPGSPCSPLSPFGPGGPIGPTSPFS----------PSGPMGPFFPVSPWSPFS 62
           P  + P  P        P G  G  GP  P            P GP     P SP  P S
Sbjct: 488 PGFRGPAGPNGIPGEKGPAGERGAPGPAGPRGAAGEPGRDGVPGGPGMRGMPGSPGGPGS 547

Query: 63  PARPSGP 69
             +P  P
Sbjct: 548 DGKPGPP 554



 Score = 26.6 bits (57), Expect = 8.2
 Identities = 19/51 (37%), Positives = 20/51 (39%), Gaps = 1/51 (1%)

Query: 18  PGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSG 68
           PG  G P  P     PG P GP S   P GP G         P  P+ P G
Sbjct: 524 PGRDGVPGGPGMRGMPGSPGGPGSDGKP-GPPGSQGESGRPGPPGPSGPRG 573


>gi|169207799 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 140

 Score = 40.0 bits (92), Expect = 7e-04
 Identities = 36/94 (38%), Positives = 39/94 (41%), Gaps = 20/94 (21%)

Query: 2   PTEKADLSTMLPHLQTPGSPGSPCSPLSPFGPGGPIGPTSP------------FSPSGPM 49
           P EKADLS     L TP  PG+P S L P  PG P     P             SP  P 
Sbjct: 16  PEEKADLSPRPRFLATPRVPGTPTSQLPPRIPGPPTTRQPPRVPDHLHLSCPRASPDRPR 75

Query: 50  GPFFPVSPWS--PFSPAR------PSGPVLPLKP 75
                 SP +  P SPAR      PS P LP +P
Sbjct: 76  PSCPLASPIADVPPSPARPRTAHVPSAPRLPDRP 109


>gi|119829187 alpha 1 type XVII collagen [Homo sapiens]
          Length = 1497

 Score = 39.7 bits (91), Expect = 0.001
 Identities = 24/66 (36%), Positives = 26/66 (39%), Gaps = 1/66 (1%)

Query: 15  LQTPGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGPVLPLK 74
           L  PG PG P   + P GP G  GP  P    G         P  P  P  P GP +P  
Sbjct: 817 LTVPGPPGPP-GAMGPPGPPGAPGPAGPAGLPGHQEVLNLQGPPGPPGPRGPPGPSIPGP 875

Query: 75  PSERFP 80
           P  R P
Sbjct: 876 PGPRGP 881



 Score = 37.4 bits (85), Expect = 0.005
 Identities = 29/81 (35%), Positives = 31/81 (38%), Gaps = 18/81 (22%)

Query: 9   STMLPHLQTPGSPGS--PCSPLSPFGPGGPI------------GPTSPFSPSGPMGPFFP 54
           S+ML     PG PG+  P  P    GP GP             GP  P  P GP GP  P
Sbjct: 814 SSMLTVPGPPGPPGAMGPPGPPGAPGPAGPAGLPGHQEVLNLQGPPGPPGPRGPPGPSIP 873

Query: 55  VSPWSPFSPARPSGPVLPLKP 75
                P  P  P G  LP  P
Sbjct: 874 ----GPPGPRGPPGEGLPGPP 890



 Score = 35.4 bits (80), Expect = 0.018
 Identities = 29/75 (38%), Positives = 29/75 (38%), Gaps = 20/75 (26%)

Query: 18  PGSPGSPCSPLS--------PFGPGGPIGPTSPFSPSGPMG-------PFFPVSPWSPF- 61
           PG PG P S LS        P GP GP GP     P GP G       P F  S  S F 
Sbjct: 887 PGPPGPPGSFLSNSETFLSGPPGPPGPPGPKGDQGPPGPRGHQGEQGLPGFSTSGSSSFG 946

Query: 62  ----SPARPSGPVLP 72
                P  P GP  P
Sbjct: 947 LNLQGPPGPPGPQGP 961



 Score = 33.9 bits (76), Expect = 0.051
 Identities = 24/63 (38%), Positives = 25/63 (39%), Gaps = 4/63 (6%)

Query: 14  HLQTPGSPGSPCSPLSPF--GPGGPIGPTSPF--SPSGPMGPFFPVSPWSPFSPARPSGP 69
           +LQ P  P  P  P  P   GP GP GP       P GP G F   S      P  P GP
Sbjct: 854 NLQGPPGPPGPRGPPGPSIPGPPGPRGPPGEGLPGPPGPPGSFLSNSETFLSGPPGPPGP 913

Query: 70  VLP 72
             P
Sbjct: 914 PGP 916



 Score = 32.7 bits (73), Expect = 0.11
 Identities = 19/52 (36%), Positives = 21/52 (40%), Gaps = 1/52 (1%)

Query: 18  PGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSGP 69
           PG+PG P  PL   GP GP G        G  GP        P  P   +GP
Sbjct: 587 PGTPGIP-GPLGHPGPQGPKGQKGSVGDPGMEGPMGQRGREGPMGPRGEAGP 637



 Score = 31.2 bits (69), Expect = 0.33
 Identities = 20/52 (38%), Positives = 20/52 (38%), Gaps = 1/52 (1%)

Query: 17  TPGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSG 68
           TPG PG P     P GP G  G        GPMG      P  P   A P G
Sbjct: 589 TPGIPG-PLGHPGPQGPKGQKGSVGDPGMEGPMGQRGREGPMGPRGEAGPPG 639



 Score = 30.4 bits (67), Expect = 0.57
 Identities = 23/59 (38%), Positives = 23/59 (38%), Gaps = 9/59 (15%)

Query: 18  PGSPGSPCSPLSPFGPG--GPIGPTSPFSP------SGPMGPFFPVSPWSPFSPARPSG 68
           P  PG P  P  P G G  GP GP   F        SGP GP  P  P     P  P G
Sbjct: 870 PSIPGPP-GPRGPPGEGLPGPPGPPGSFLSNSETFLSGPPGPPGPPGPKGDQGPPGPRG 927



 Score = 28.1 bits (61), Expect = 2.8
 Identities = 15/37 (40%), Positives = 17/37 (45%), Gaps = 1/37 (2%)

Query: 19  GSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMGPFFPV 55
           G+ G P  P  P G  G +GP       GP GP  PV
Sbjct: 647 GAAGEP-GPHGPPGVPGSVGPKGSSGSPGPQGPPGPV 682



 Score = 27.3 bits (59), Expect = 4.8
 Identities = 15/33 (45%), Positives = 16/33 (48%), Gaps = 1/33 (3%)

Query: 18  PGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMG 50
           PG  G P  P S  GP G  G   P  P GP+G
Sbjct: 652 PGPHGPPGVPGS-VGPKGSSGSPGPQGPPGPVG 683



 Score = 26.9 bits (58), Expect = 6.2
 Identities = 14/33 (42%), Positives = 15/33 (45%), Gaps = 1/33 (3%)

Query: 18   PGSPGSPCSPLSPFGPGGPIGPTSPFSPSGPMG 50
            PG  G   +P  P G  GP GP     P GP G
Sbjct: 1440 PGQKGEMGTP-GPKGDRGPAGPPGHPGPPGPRG 1471



 Score = 26.6 bits (57), Expect = 8.2
 Identities = 21/61 (34%), Positives = 22/61 (36%), Gaps = 13/61 (21%)

Query: 14  HLQTPGSPGSPCSPLSPFG-----PGGPIGPTSPFSPSGPMGPFFPVSPWSPFSPARPSG 68
           H    G PG   S  S FG     P GP GP  P    G         P  P +   PSG
Sbjct: 928 HQGEQGLPGFSTSGSSSFGLNLQGPPGPPGPQGPKGDKG--------DPGVPGALGIPSG 979

Query: 69  P 69
           P
Sbjct: 980 P 980


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.318    0.139    0.477 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,545,585
Number of Sequences: 37866
Number of extensions: 546480
Number of successful extensions: 10188
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 266
Number of HSP's successfully gapped in prelim test: 406
Number of HSP's that attempted gapping in prelim test: 3222
Number of HSP's gapped (non-prelim): 4463
length of query: 148
length of database: 18,247,518
effective HSP length: 93
effective length of query: 55
effective length of database: 14,725,980
effective search space: 809928900
effective search space used: 809928900
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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