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Search of human proteins with 239753301
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239753301 PREDICTED: hypothetical protein [Homo sapiens]
(191 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239753301 PREDICTED: hypothetical protein [Homo sapiens] 417 e-117
gi|239752719 PREDICTED: hypothetical protein [Homo sapiens] 311 3e-85
gi|239741081 PREDICTED: hypothetical protein XP_002342086 [Homo ... 233 1e-61
gi|51093874 proline rich 19 [Homo sapiens] 39 0.003
gi|18105018 acetylcholinesterase collagen-like tail subunit isof... 35 0.051
gi|18105016 acetylcholinesterase collagen-like tail subunit isof... 35 0.051
gi|27735129 hypothetical protein LOC148345 [Homo sapiens] 34 0.088
gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens] 34 0.088
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens] 33 0.11
gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo s... 32 0.25
gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo sa... 32 0.25
gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo s... 32 0.25
gi|149158690 HLA-B associated transcript-2 [Homo sapiens] 32 0.33
gi|116256354 alpha 2 type IV collagen preproprotein [Homo sapiens] 32 0.33
gi|145701009 acetylcholinesterase collagen-like tail subunit iso... 32 0.43
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 32 0.43
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 32 0.43
gi|7662146 DnaJ (Hsp40) homolog, subfamily C, member 6 [Homo sap... 32 0.43
gi|239753314 PREDICTED: similar to RIKEN cDNA C230030N03 [Homo s... 31 0.57
gi|239753062 PREDICTED: hypothetical protein [Homo sapiens] 31 0.57
gi|115392133 collagen, type XXIV, alpha 1 [Homo sapiens] 31 0.57
gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens] 31 0.74
gi|45439370 TAO kinase 1 [Homo sapiens] 31 0.74
gi|194294532 alpha 1 type XIII collagen isoform 20 [Homo sapiens] 31 0.74
gi|22027609 alpha 1 type XIII collagen isoform 19 [Homo sapiens] 31 0.74
gi|22027607 alpha 1 type XIII collagen isoform 18 [Homo sapiens] 31 0.74
gi|22027605 alpha 1 type XIII collagen isoform 17 [Homo sapiens] 31 0.74
gi|22027603 alpha 1 type XIII collagen isoform 16 [Homo sapiens] 31 0.74
gi|22027601 alpha 1 type XIII collagen isoform 15 [Homo sapiens] 31 0.74
gi|22027599 alpha 1 type XIII collagen isoform 14 [Homo sapiens] 31 0.74
>gi|239753301 PREDICTED: hypothetical protein [Homo sapiens]
Length = 191
Score = 417 bits (1072), Expect = e-117
Identities = 191/191 (100%), Positives = 191/191 (100%)
Query: 1 MGLGQPASKSQWVRKENRGRGALGPQPFQSEPGLPGWSPPRASRGLTHKWQHPWPKPPHS 60
MGLGQPASKSQWVRKENRGRGALGPQPFQSEPGLPGWSPPRASRGLTHKWQHPWPKPPHS
Sbjct: 1 MGLGQPASKSQWVRKENRGRGALGPQPFQSEPGLPGWSPPRASRGLTHKWQHPWPKPPHS 60
Query: 61 WAASWPEEGRQCSSGLLPKPLLGLRTVGSGWGLNISFGLLTQSMKQDHGPERGAGFLGAG 120
WAASWPEEGRQCSSGLLPKPLLGLRTVGSGWGLNISFGLLTQSMKQDHGPERGAGFLGAG
Sbjct: 61 WAASWPEEGRQCSSGLLPKPLLGLRTVGSGWGLNISFGLLTQSMKQDHGPERGAGFLGAG 120
Query: 121 LKSSLPQMGWALTLRELQMGELGAPQASGHWGQPEEEGLWDGLELGQLPEAGLTPSSPDR 180
LKSSLPQMGWALTLRELQMGELGAPQASGHWGQPEEEGLWDGLELGQLPEAGLTPSSPDR
Sbjct: 121 LKSSLPQMGWALTLRELQMGELGAPQASGHWGQPEEEGLWDGLELGQLPEAGLTPSSPDR 180
Query: 181 GAKSECCVHSW 191
GAKSECCVHSW
Sbjct: 181 GAKSECCVHSW 191
>gi|239752719 PREDICTED: hypothetical protein [Homo sapiens]
Length = 158
Score = 311 bits (796), Expect = 3e-85
Identities = 141/144 (97%), Positives = 142/144 (98%)
Query: 48 HKWQHPWPKPPHSWAASWPEEGRQCSSGLLPKPLLGLRTVGSGWGLNISFGLLTQSMKQD 107
HKWQH WPKPPHSWAASWP EGRQCSSGLLPKPLLGLRTVGSGWGLNISFGLLTQSMKQD
Sbjct: 15 HKWQHAWPKPPHSWAASWPTEGRQCSSGLLPKPLLGLRTVGSGWGLNISFGLLTQSMKQD 74
Query: 108 HGPERGAGFLGAGLKSSLPQMGWALTLRELQMGELGAPQASGHWGQPEEEGLWDGLELGQ 167
HGPERGAGFLGAGL+SSLPQMGWALTLRELQMGELGAPQASGHWGQPEEEGLWDGLELGQ
Sbjct: 75 HGPERGAGFLGAGLESSLPQMGWALTLRELQMGELGAPQASGHWGQPEEEGLWDGLELGQ 134
Query: 168 LPEAGLTPSSPDRGAKSECCVHSW 191
LPEAGLTPSSPDRGAKSECCVHSW
Sbjct: 135 LPEAGLTPSSPDRGAKSECCVHSW 158
>gi|239741081 PREDICTED: hypothetical protein XP_002342086 [Homo
sapiens]
Length = 155
Score = 233 bits (593), Expect = 1e-61
Identities = 110/117 (94%), Positives = 112/117 (95%)
Query: 75 GLLPKPLLGLRTVGSGWGLNISFGLLTQSMKQDHGPERGAGFLGAGLKSSLPQMGWALTL 134
G + LLGLRTVGSGWGLNISFGLLTQSMKQDHGPERGAGFLGAGL+SSLPQMGWALTL
Sbjct: 39 GPTTQTLLGLRTVGSGWGLNISFGLLTQSMKQDHGPERGAGFLGAGLESSLPQMGWALTL 98
Query: 135 RELQMGELGAPQASGHWGQPEEEGLWDGLELGQLPEAGLTPSSPDRGAKSECCVHSW 191
RELQMGELGAPQASGHWGQPEEE LWDGLELGQLPEAGLTPSSPDRGAKSECCVHSW
Sbjct: 99 RELQMGELGAPQASGHWGQPEEEELWDGLELGQLPEAGLTPSSPDRGAKSECCVHSW 155
>gi|51093874 proline rich 19 [Homo sapiens]
Length = 356
Score = 38.9 bits (89), Expect = 0.003
Identities = 24/68 (35%), Positives = 27/68 (39%), Gaps = 8/68 (11%)
Query: 20 RGALGPQ--------PFQSEPGLPGWSPPRASRGLTHKWQHPWPKPPHSWAASWPEEGRQ 71
RG+L P P S P W PP A L W P PP W P+ Q
Sbjct: 252 RGSLAPPRGPWPPYFPSLSSPSGTAWGPPTAFDLLKSIWLVATPPPPRPWGVGLPQPLPQ 311
Query: 72 CSSGLLPK 79
SS LLP+
Sbjct: 312 PSSPLLPR 319
>gi|18105018 acetylcholinesterase collagen-like tail subunit isoform
II [Homo sapiens]
Length = 445
Score = 34.7 bits (78), Expect = 0.051
Identities = 42/148 (28%), Positives = 55/148 (37%), Gaps = 22/148 (14%)
Query: 21 GALGPQPFQSEPGLPGWSPPRASRG-LTHKWQHPWPKPPH--------SWAASWPEEGRQ 71
G+ GP Q PGLPG + P+ +G L + P PP W G +
Sbjct: 89 GSPGPPGPQGPPGLPGKTGPKGEKGELGRPGRKGRPGPPGVPGMPGPIGWPGPEGPRGEK 148
Query: 72 CSSGLLPKPLLGLRTVGSGWGLNISFGLL-TQSMKQDHGPERGAGFLGAGLKSSLPQMGW 130
G++ P G R G S G ++ K D GP+ GF G L Q G
Sbjct: 149 GDLGMMGLP--GSRGPMGSKGYPGSRGEKGSRGEKGDLGPKGEKGF--PGFPGMLGQKG- 203
Query: 131 ALTLRELQMGELGAPQASGHWGQPEEEG 158
+MG G P +GH G G
Sbjct: 204 -------EMGPKGEPGIAGHRGPTGRPG 224
>gi|18105016 acetylcholinesterase collagen-like tail subunit isoform
I precursor [Homo sapiens]
Length = 455
Score = 34.7 bits (78), Expect = 0.051
Identities = 42/148 (28%), Positives = 55/148 (37%), Gaps = 22/148 (14%)
Query: 21 GALGPQPFQSEPGLPGWSPPRASRG-LTHKWQHPWPKPPH--------SWAASWPEEGRQ 71
G+ GP Q PGLPG + P+ +G L + P PP W G +
Sbjct: 99 GSPGPPGPQGPPGLPGKTGPKGEKGELGRPGRKGRPGPPGVPGMPGPIGWPGPEGPRGEK 158
Query: 72 CSSGLLPKPLLGLRTVGSGWGLNISFGLL-TQSMKQDHGPERGAGFLGAGLKSSLPQMGW 130
G++ P G R G S G ++ K D GP+ GF G L Q G
Sbjct: 159 GDLGMMGLP--GSRGPMGSKGYPGSRGEKGSRGEKGDLGPKGEKGF--PGFPGMLGQKG- 213
Query: 131 ALTLRELQMGELGAPQASGHWGQPEEEG 158
+MG G P +GH G G
Sbjct: 214 -------EMGPKGEPGIAGHRGPTGRPG 234
>gi|27735129 hypothetical protein LOC148345 [Homo sapiens]
Length = 656
Score = 33.9 bits (76), Expect = 0.088
Identities = 42/142 (29%), Positives = 56/142 (39%), Gaps = 24/142 (16%)
Query: 24 GPQPFQSEPGLPGWSPPRA---SRGLTHKWQHPW-PKP--PHSWAASWPEEGRQCS-SGL 76
GPQP E G+PG P A S + PW P+P P A + P S S
Sbjct: 295 GPQPPPGEAGIPGHPTPPATLPSEPVEGVQASPWRPRPVLPTHPALTLPVSSDASSPSPP 354
Query: 77 LPKPLLGLRTVGSGWGLNISFGLLTQSMKQDHGPERGAGFLGAGLKSSLPQMGWALTLRE 136
P+P + SG + ++ GL T +QD G+ L LR
Sbjct: 355 APRPERPESLLVSGPSVTLTEGLGTVRPEQDPAKSPGS----------------PLLLRG 398
Query: 137 LQMGELGAPQ-ASGHWGQPEEE 157
L G++ AP+ G GQ EE
Sbjct: 399 LSSGDVAAPEPIMGEPGQASEE 420
>gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens]
Length = 1604
Score = 33.9 bits (76), Expect = 0.088
Identities = 42/143 (29%), Positives = 53/143 (37%), Gaps = 18/143 (12%)
Query: 21 GALGPQPFQSEPGLPGWSPPRASRGLTHKWQHPWPKPPHSWAASWPEEGRQCSSGLLPKP 80
G G Q FQ +PG PG P G K P P P + S EG + SGL P
Sbjct: 1147 GEKGDQGFQGQPGFPG---PPGPPGFPGKVGSPGPPGPQAEKGS---EGIRGPSGLPGSP 1200
Query: 81 ----LLGLRTVGSGWGLNISFGLLTQSMKQDHGPERGAGFLG-AGLKSSLPQMGWALTLR 135
G++ GL+ G ++ D GP G +G G K G
Sbjct: 1201 GPPGPPGIQGPAGLDGLDGKDG--KPGLRGDPGPAGPPGLMGPPGFKGKTGHPG-----L 1253
Query: 136 ELQMGELGAPQASGHWGQPEEEG 158
G+ G P G G+P EG
Sbjct: 1254 PGPKGDCGKPGPPGSTGRPGAEG 1276
>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
Length = 2944
Score = 33.5 bits (75), Expect = 0.11
Identities = 50/183 (27%), Positives = 69/183 (37%), Gaps = 25/183 (13%)
Query: 21 GALGPQPFQSEPGLPGWSPPRASRGLTHKWQH---PWPKPPHSWAASWPEEGRQCSSGLL 77
G +GP P Q PG+PG + P+ RG T P + S P R + +
Sbjct: 1893 GPVGP-PGQGFPGVPGGTGPKGDRGETGSKGEQGLPGERGLRGEPGSVPNVDRLLETAGI 1951
Query: 78 PKPLLGLRTVGSGWGLNISFGLLTQSMKQDHGPERGAGFLGA-------------GLKSS 124
LR + W + S G ++ GP+ +G G GLK
Sbjct: 1952 KAS--ALREIVETW--DESSGSFLPVPERRRGPKGDSGEQGPPGKEGPIGFPGERGLKGD 2007
Query: 125 LPQMGWALTLRELQMGELGAPQASGHWGQPEEEGLWDGL--ELGQLPEAGLTPSSPDRGA 182
G L +GE G P SG G+P + G+ GL G + EAG +RG
Sbjct: 2008 RGDPG-PQGPPGLALGERGPPGPSGLAGEPGKPGI-PGLPGRAGGVGEAGRPGERGERGE 2065
Query: 183 KSE 185
K E
Sbjct: 2066 KGE 2068
Score = 33.5 bits (75), Expect = 0.11
Identities = 49/172 (28%), Positives = 62/172 (36%), Gaps = 36/172 (20%)
Query: 4 GQPASKSQWVRKENRG-------RGALGPQPFQSEPGLP---GWSPPRASRGLTHK---- 49
G+P S K +RG RG GP+ PGLP G + P GL
Sbjct: 2117 GEPGSNGDQGPKGDRGVPGIKGDRGEPGPRGQDGNPGLPGERGMAGPEGKPGLQGPRGPP 2176
Query: 50 ---WQHPWPKPPHSWAASWPEEGRQCSSGLLPKPLLGLRTVGSGWGLNISFGLLTQSMKQ 106
H P PP + + P G Q SGL +P T G GL G +
Sbjct: 2177 GPVGGHGDPGPPGAPGLAGP-AGPQGPSGLKGEP---GETGPPGRGLTGPTGAVGLP--- 2229
Query: 107 DHGPERGAGFLGAGLKSSLPQMGWALTLRELQMGELGAPQASGHWGQPEEEG 158
GP +G +G LP Q+GE G P A G G ++G
Sbjct: 2230 --GPPGPSGLVGPQGSPGLPG----------QVGETGKPGAPGRDGASGKDG 2269
>gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo
sapiens]
Length = 1691
Score = 32.3 bits (72), Expect = 0.25
Identities = 44/145 (30%), Positives = 57/145 (39%), Gaps = 12/145 (8%)
Query: 21 GALGPQPFQSEPGLPGWSPPRASRGLTHKWQHPWPKPPHSWAASWPEEGRQCSSGLL--- 77
G G Q +PGLPG + + S+G P P P + S E+G G+
Sbjct: 920 GLKGDDGLQGQPGLPGPTGEKGSKGEPGLPGPPGPMDP-NLLGSKGEKGEPGLPGIPGVS 978
Query: 78 -PKPLLGLRTVGSGWGLNISFGLL-TQSMKQDHGPERGAGFLG-AGLKSSLPQMGWALTL 134
PK GL GL+ GL K + G G +G GLK ++ MG+
Sbjct: 979 GPKGYQGLPGDPGQPGLSGQPGLPGPPGPKGNPGLPGQPGLIGPPGLKGTIGDMGF---- 1034
Query: 135 RELQMGELGAPQASGHWGQPEEEGL 159
G G P SG GQP GL
Sbjct: 1035 -PGPQGVEGPPGPSGVPGQPGSPGL 1058
Score = 27.7 bits (60), Expect = 6.3
Identities = 35/144 (24%), Positives = 46/144 (31%), Gaps = 29/144 (20%)
Query: 21 GALGPQPFQSEPGLPGWSPPRASRGLTHKWQHPWPKPPHSWAASWPEEGRQCSSGLLPKP 80
G GP PG PG P+ + GL +Q P + P Q S P
Sbjct: 195 GPPGPPGLMGPPGPPGLPGPKGNMGL--NFQGPKGEKGEQGLQGPPGPPGQISEQKRP-- 250
Query: 81 LLGLRTVGSGWGLNISFGLLTQSMKQDHGPERGAGFLG-----AGLKSSLPQMGWALTLR 135
+++ F Q + D GP G G G K + G
Sbjct: 251 ------------IDVEFQKGDQGLPGDRGPPGPPGIRGPPGPPGGEKGEKGEQG------ 292
Query: 136 ELQMGELGAPQASGHWGQPEEEGL 159
+ G+ G P G GQP GL
Sbjct: 293 --EPGKRGKPGKDGENGQPGIPGL 314
>gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo
sapiens]
Length = 1685
Score = 32.3 bits (72), Expect = 0.25
Identities = 44/145 (30%), Positives = 57/145 (39%), Gaps = 12/145 (8%)
Query: 21 GALGPQPFQSEPGLPGWSPPRASRGLTHKWQHPWPKPPHSWAASWPEEGRQCSSGLL--- 77
G G Q +PGLPG + + S+G P P P + S E+G G+
Sbjct: 920 GLKGDDGLQGQPGLPGPTGEKGSKGEPGLPGPPGPMDP-NLLGSKGEKGEPGLPGIPGVS 978
Query: 78 -PKPLLGLRTVGSGWGLNISFGLL-TQSMKQDHGPERGAGFLG-AGLKSSLPQMGWALTL 134
PK GL GL+ GL K + G G +G GLK ++ MG+
Sbjct: 979 GPKGYQGLPGDPGQPGLSGQPGLPGPPGPKGNPGLPGQPGLIGPPGLKGTIGDMGF---- 1034
Query: 135 RELQMGELGAPQASGHWGQPEEEGL 159
G G P SG GQP GL
Sbjct: 1035 -PGPQGVEGPPGPSGVPGQPGSPGL 1058
Score = 27.7 bits (60), Expect = 6.3
Identities = 35/144 (24%), Positives = 46/144 (31%), Gaps = 29/144 (20%)
Query: 21 GALGPQPFQSEPGLPGWSPPRASRGLTHKWQHPWPKPPHSWAASWPEEGRQCSSGLLPKP 80
G GP PG PG P+ + GL +Q P + P Q S P
Sbjct: 195 GPPGPPGLMGPPGPPGLPGPKGNMGL--NFQGPKGEKGEQGLQGPPGPPGQISEQKRP-- 250
Query: 81 LLGLRTVGSGWGLNISFGLLTQSMKQDHGPERGAGFLG-----AGLKSSLPQMGWALTLR 135
+++ F Q + D GP G G G K + G
Sbjct: 251 ------------IDVEFQKGDQGLPGDRGPPGPPGIRGPPGPPGGEKGEKGEQG------ 292
Query: 136 ELQMGELGAPQASGHWGQPEEEGL 159
+ G+ G P G GQP GL
Sbjct: 293 --EPGKRGKPGKDGENGQPGIPGL 314
>gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo
sapiens]
Length = 1688
Score = 32.3 bits (72), Expect = 0.25
Identities = 44/145 (30%), Positives = 57/145 (39%), Gaps = 12/145 (8%)
Query: 21 GALGPQPFQSEPGLPGWSPPRASRGLTHKWQHPWPKPPHSWAASWPEEGRQCSSGLL--- 77
G G Q +PGLPG + + S+G P P P + S E+G G+
Sbjct: 920 GLKGDDGLQGQPGLPGPTGEKGSKGEPGLPGPPGPMDP-NLLGSKGEKGEPGLPGIPGVS 978
Query: 78 -PKPLLGLRTVGSGWGLNISFGLL-TQSMKQDHGPERGAGFLG-AGLKSSLPQMGWALTL 134
PK GL GL+ GL K + G G +G GLK ++ MG+
Sbjct: 979 GPKGYQGLPGDPGQPGLSGQPGLPGPPGPKGNPGLPGQPGLIGPPGLKGTIGDMGF---- 1034
Query: 135 RELQMGELGAPQASGHWGQPEEEGL 159
G G P SG GQP GL
Sbjct: 1035 -PGPQGVEGPPGPSGVPGQPGSPGL 1058
Score = 27.7 bits (60), Expect = 6.3
Identities = 35/144 (24%), Positives = 46/144 (31%), Gaps = 29/144 (20%)
Query: 21 GALGPQPFQSEPGLPGWSPPRASRGLTHKWQHPWPKPPHSWAASWPEEGRQCSSGLLPKP 80
G GP PG PG P+ + GL +Q P + P Q S P
Sbjct: 195 GPPGPPGLMGPPGPPGLPGPKGNMGL--NFQGPKGEKGEQGLQGPPGPPGQISEQKRP-- 250
Query: 81 LLGLRTVGSGWGLNISFGLLTQSMKQDHGPERGAGFLG-----AGLKSSLPQMGWALTLR 135
+++ F Q + D GP G G G K + G
Sbjct: 251 ------------IDVEFQKGDQGLPGDRGPPGPPGIRGPPGPPGGEKGEKGEQG------ 292
Query: 136 ELQMGELGAPQASGHWGQPEEEGL 159
+ G+ G P G GQP GL
Sbjct: 293 --EPGKRGKPGKDGENGQPGIPGL 314
>gi|149158690 HLA-B associated transcript-2 [Homo sapiens]
Length = 2157
Score = 32.0 bits (71), Expect = 0.33
Identities = 28/92 (30%), Positives = 36/92 (39%), Gaps = 15/92 (16%)
Query: 18 RGRGALGPQPFQSEPGLPGWSPPRASRGLTHKWQHPWPKPPHSWAASWPEEGRQCSSGLL 77
RGRG P P PGWSPP ++ L K KPP P L+
Sbjct: 1170 RGRGGGRPPP----QVCPGWSPP--AKSLAPK------KPP---TGPLPPSKEPLKEKLI 1214
Query: 78 PKPLLGLRTVGSGWGLNISFGLLTQSMKQDHG 109
P PL + GS G N+ + ++ HG
Sbjct: 1215 PGPLSPVARGGSNGGSNVGMEDGERPRRRRHG 1246
>gi|116256354 alpha 2 type IV collagen preproprotein [Homo sapiens]
Length = 1712
Score = 32.0 bits (71), Expect = 0.33
Identities = 47/165 (28%), Positives = 59/165 (35%), Gaps = 22/165 (13%)
Query: 21 GALGPQPFQSEPGLPGWSPPRASRGLTHKWQHPWPKPPHSWAASWPEEGRQCSSGLLPKP 80
G GP + + G PG + P S+G + P K W + GL P
Sbjct: 1140 GVQGPPGLKGQTGFPGLTGPPGSQGELGRIGLPGGKGDDGWPG---------APGLPGFP 1190
Query: 81 LLGLRTVGSGWGLNISFGLLTQSMKQDHGPERGAGFLGAGLKSSLPQMGWALTLRELQMG 140
GLR + GL + G HG GF G + P G A TL G
Sbjct: 1191 --GLRGIRGLHGLPGTKGFPGSPGSDIHG---DPGFPGPPGERGDP--GEANTL----PG 1239
Query: 141 ELGAPQASGHWGQPEEEGLWDGLELGQLPEAGLTPSSPDRGAKSE 185
+G P G G P E G L P G+TP S GA +
Sbjct: 1240 PVGVPGQKGDQGAPGERGPPGSPGLQGFP--GITPPSNISGAPGD 1282
Score = 30.0 bits (66), Expect = 1.3
Identities = 46/171 (26%), Positives = 61/171 (35%), Gaps = 18/171 (10%)
Query: 15 KENRGR-GALGPQPFQSEPGLPGWSPPRASRGLTHKWQHPWPKPPHSWAASWPEEGRQCS 73
K RG+ G +GPQ + PGL G+ + +G + P P + G +
Sbjct: 57 KGGRGQPGPVGPQGYNGPPGLQGFPGLQGRKGDKGERGAPGVTGPKGDVGARGVSGFPGA 116
Query: 74 SGLLPKPLLGLRTVGSGW-GLNISFGLLTQSMKQDHGPERGAGFLG-AGLKSSLPQMGWA 131
G+ P G G+ G N TQ GP GF G G + Q G
Sbjct: 117 DGIPGHPGQGGPRGRPGYDGCN-----GTQGDSGPQGPPGSEGFTGPPGPQGPKGQKGEP 171
Query: 132 LTL----RELQMGELGAPQASGHWGQPEEEGLWDGLELGQLPEAGLTPSSP 178
L R+ GE G P G G P G +GQ+ G P P
Sbjct: 172 YALPKEERDRYRGEPGEPGLVGFQGPPGRPG-----HVGQMGPVG-APGRP 216
>gi|145701009 acetylcholinesterase collagen-like tail subunit
isoform III precursor [Homo sapiens]
Length = 421
Score = 31.6 bits (70), Expect = 0.43
Identities = 42/149 (28%), Positives = 54/149 (36%), Gaps = 26/149 (17%)
Query: 20 RGALGPQPFQSEPGLPGWSPPRASRG-LTHKWQHPWPKPPH--------SWAASWPEEGR 70
RG P P PGLPG + P+ +G L + P PP W G
Sbjct: 68 RGGRSPGP----PGLPGKTGPKGEKGELGRPGRKGRPGPPGVPGMPGPIGWPGPEGPRGE 123
Query: 71 QCSSGLLPKPLLGLRTVGSGWGLNISFGLL-TQSMKQDHGPERGAGFLGAGLKSSLPQMG 129
+ G++ P G R G S G ++ K D GP+ GF G L Q G
Sbjct: 124 KGDLGMMGLP--GSRGPMGSKGYPGSRGEKGSRGEKGDLGPKGEKGF--PGFPGMLGQKG 179
Query: 130 WALTLRELQMGELGAPQASGHWGQPEEEG 158
+MG G P +GH G G
Sbjct: 180 --------EMGPKGEPGIAGHRGPTGRPG 200
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 31.6 bits (70), Expect = 0.43
Identities = 47/168 (27%), Positives = 55/168 (32%), Gaps = 44/168 (26%)
Query: 21 GALGPQPFQS---EPGLPGWSPPRASRGLTHKWQHPWPKPPHSWAASWPEEGRQCSSGLL 77
GA GPQ FQ EPG PG S P RG P P E G+ +G
Sbjct: 216 GAPGPQGFQGNPGEPGEPGVSGPMGPRG---------PPGPPGKPGDDGEAGKPGKAGER 266
Query: 78 PKPLLGLRTVGSGWGLNISFGLLTQSMKQDHGPERGAGFLGA-GLKSSLPQMGWALTLRE 136
P GP+ GF G GL G+ +
Sbjct: 267 GPP----------------------------GPQGARGFPGTPGLPGVKGHRGYPGL--D 296
Query: 137 LQMGELGAPQASGHWGQPEEEGLWDGLELGQLP-EAGLTPSSPDRGAK 183
GE GAP G G P E G + LP E G T + GA+
Sbjct: 297 GAKGEAGAPGVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGAR 344
Score = 30.8 bits (68), Expect = 0.74
Identities = 38/143 (26%), Positives = 51/143 (35%), Gaps = 24/143 (16%)
Query: 21 GALGPQPFQSEPGLPGWSPPRASRGLTHKWQHPWPKPPHSWAASWPEEGRQCS----SGL 76
G LGP+ EPG+ G+ + +G P P P EEG++ + G+
Sbjct: 447 GPLGPKGQTGEPGIAGFKGEQGPKG------EPGPAGPQGAPGPAGEEGKRGARGEPGGV 500
Query: 77 LPKPLLGLRTVGSGWGLNISFGLL-TQSMKQDHGPERGAGFLGAGLKSSLPQMGWALTLR 135
P G R G GL + + GP AG GA P
Sbjct: 501 GPIGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAGPKGANGDPGRP--------- 551
Query: 136 ELQMGELGAPQASGHWGQPEEEG 158
GE G P A G G+P + G
Sbjct: 552 ----GEPGLPGARGLTGRPGDAG 570
Score = 29.3 bits (64), Expect = 2.2
Identities = 22/78 (28%), Positives = 32/78 (41%), Gaps = 1/78 (1%)
Query: 4 GQPASKSQWVRKENRG-RGALGPQPFQSEPGLPGWSPPRASRGLTHKWQHPWPKPPHSWA 62
G P ++ R + G +G +GP E G PG P+ +RG P PK +
Sbjct: 555 GLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQPGVMGFPGPKGANGEP 614
Query: 63 ASWPEEGRQCSSGLLPKP 80
E+G + GL P
Sbjct: 615 GKAGEKGLPGAPGLRGLP 632
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 31.6 bits (70), Expect = 0.43
Identities = 47/168 (27%), Positives = 55/168 (32%), Gaps = 44/168 (26%)
Query: 21 GALGPQPFQS---EPGLPGWSPPRASRGLTHKWQHPWPKPPHSWAASWPEEGRQCSSGLL 77
GA GPQ FQ EPG PG S P RG P P E G+ +G
Sbjct: 147 GAPGPQGFQGNPGEPGEPGVSGPMGPRG---------PPGPPGKPGDDGEAGKPGKAGER 197
Query: 78 PKPLLGLRTVGSGWGLNISFGLLTQSMKQDHGPERGAGFLGA-GLKSSLPQMGWALTLRE 136
P GP+ GF G GL G+ +
Sbjct: 198 GPP----------------------------GPQGARGFPGTPGLPGVKGHRGYPGL--D 227
Query: 137 LQMGELGAPQASGHWGQPEEEGLWDGLELGQLP-EAGLTPSSPDRGAK 183
GE GAP G G P E G + LP E G T + GA+
Sbjct: 228 GAKGEAGAPGVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGAR 275
Score = 30.8 bits (68), Expect = 0.74
Identities = 38/143 (26%), Positives = 51/143 (35%), Gaps = 24/143 (16%)
Query: 21 GALGPQPFQSEPGLPGWSPPRASRGLTHKWQHPWPKPPHSWAASWPEEGRQCS----SGL 76
G LGP+ EPG+ G+ + +G P P P EEG++ + G+
Sbjct: 378 GPLGPKGQTGEPGIAGFKGEQGPKG------EPGPAGPQGAPGPAGEEGKRGARGEPGGV 431
Query: 77 LPKPLLGLRTVGSGWGLNISFGLL-TQSMKQDHGPERGAGFLGAGLKSSLPQMGWALTLR 135
P G R G GL + + GP AG GA P
Sbjct: 432 GPIGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAGPKGANGDPGRP--------- 482
Query: 136 ELQMGELGAPQASGHWGQPEEEG 158
GE G P A G G+P + G
Sbjct: 483 ----GEPGLPGARGLTGRPGDAG 501
Score = 29.3 bits (64), Expect = 2.2
Identities = 22/78 (28%), Positives = 32/78 (41%), Gaps = 1/78 (1%)
Query: 4 GQPASKSQWVRKENRG-RGALGPQPFQSEPGLPGWSPPRASRGLTHKWQHPWPKPPHSWA 62
G P ++ R + G +G +GP E G PG P+ +RG P PK +
Sbjct: 486 GLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQPGVMGFPGPKGANGEP 545
Query: 63 ASWPEEGRQCSSGLLPKP 80
E+G + GL P
Sbjct: 546 GKAGEKGLPGAPGLRGLP 563
>gi|7662146 DnaJ (Hsp40) homolog, subfamily C, member 6 [Homo
sapiens]
Length = 913
Score = 31.6 bits (70), Expect = 0.43
Identities = 22/65 (33%), Positives = 27/65 (41%), Gaps = 18/65 (27%)
Query: 21 GALGPQPFQSEP----GLPGWSPPRAS--------------RGLTHKWQHPWPKPPHSWA 62
G LG F S+P GL G PP +S +G + WQ P PKP S
Sbjct: 683 GTLGSSSFASKPTTPTGLGGGFPPLSSPQKASPQPMGGGWQQGGAYNWQQPQPKPQPSMP 742
Query: 63 ASWPE 67
S P+
Sbjct: 743 HSSPQ 747
>gi|239753314 PREDICTED: similar to RIKEN cDNA C230030N03 [Homo
sapiens]
Length = 1183
Score = 31.2 bits (69), Expect = 0.57
Identities = 43/160 (26%), Positives = 61/160 (38%), Gaps = 26/160 (16%)
Query: 13 VRKENR--GRGALGPQPFQS---------EPGLPGWSPPRASRGLTHKWQHPWPKPPHSW 61
+R E+R G G GP+ P +P PP+ RGL Q P +P S
Sbjct: 667 LRGESRSSGSGERGPEEAPEGGAAAARGQRPRVPALEPPQPPRGLRKGAQEPGKRPTFSK 726
Query: 62 AASWPEEGRQC---SSGLLPKPLLGLRTVGSGWGLNISFGLLTQSMKQDHGPERGAGFLG 118
S+ +GR S G +P P T G WG + GL ++ G R A L
Sbjct: 727 VTSF-RKGRPLATESPGGVPAP----TTEGRRWGSSGPEGLPRENPPAAAG--RDAPPLH 779
Query: 119 AGLKSSLPQMGWALTLRELQMGELGAPQASGHWGQPEEEG 158
G S+ P+ + + P +GH G + G
Sbjct: 780 HGDASAWPEF-----VPQAAGDRTAGPAGAGHTGTSGDLG 814
>gi|239753062 PREDICTED: hypothetical protein [Homo sapiens]
Length = 811
Score = 31.2 bits (69), Expect = 0.57
Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 10/52 (19%)
Query: 1 MGLGQPASKSQWVRKENRGRGALGPQPFQSEPGLPGWSPPR-----ASRGLT 47
+ LG PA++ W+R RGRG G P Q P +S PR ASRG++
Sbjct: 191 LALGCPAAQPPWLR---RGRG--GVSPCQEPPARTKYSAPRPAFSEASRGVS 237
>gi|115392133 collagen, type XXIV, alpha 1 [Homo sapiens]
Length = 1714
Score = 31.2 bits (69), Expect = 0.57
Identities = 47/165 (28%), Positives = 60/165 (36%), Gaps = 19/165 (11%)
Query: 4 GQPASKSQWVRKENRGR-GALGPQPFQSEPGLPGWSPPRASRGLTHKWQHPWPKPPHSWA 62
G P S+ ++ +RG G LG Q Q G G R GL K +P +
Sbjct: 915 GPPGSQGPKGQRGSRGPDGLLGEQGIQGAKGEKGDQGKRGPHGLIGKTGNPGERGFQGKP 974
Query: 63 ASWPEEGRQCSSGLLPKPLLGLRTVGSGWGLNISFGLLTQSMKQDHGPERGAGFLGA-GL 121
G GL +P GLR + G G M+ G E +G G G
Sbjct: 975 GLQGLPGSTGDRGLPGEP--GLRGLQGDVGPPGEMG-----MEGPPGTEGESGLQGEPGA 1027
Query: 122 KSSLPQMGWALTLRELQMGELGAPQASGHWGQPEEEGLW--DGLE 164
K + G +G G P G G P EEGL DGL+
Sbjct: 1028 KGDVGTAG--------SVGGTGEPGLRGEPGAPGEEGLQGKDGLK 1064
Score = 30.0 bits (66), Expect = 1.3
Identities = 46/168 (27%), Positives = 59/168 (35%), Gaps = 24/168 (14%)
Query: 21 GALGPQPFQSEPGLPGWSPPRASRGLTHKWQHPWPKPPHSWAASWPE----EGRQCSSGL 76
G GP GLPG + +G + P P A P G+ SG
Sbjct: 696 GIPGPMGLSGNKGLPGIKGDKGEQGTAGELGEPG-YPGDKGAVGLPGPPGMRGKSGPSGQ 754
Query: 77 LPKP-LLGLRTVGSGWGLNISFGLLTQSMKQDHGPERGAGFLG-------AGLKSSLPQM 128
P L G G G+ Q+ GPE G LG GLK + +
Sbjct: 755 TGDPGLQGPSGPPGPEGFPGDIGIPGQN-----GPEGPKGLLGNRGPPGPPGLKGTQGEE 809
Query: 129 GWALTLRELQMGELGAPQASGHWGQPEEEGL----WDGLELGQLPEAG 172
G EL G G P G+ G+P EGL D +G++ E G
Sbjct: 810 GPIGAFGEL--GPRGKPGQKGYAGEPGPEGLKGEVGDQGNIGKIGETG 855
Score = 27.3 bits (59), Expect = 8.2
Identities = 34/135 (25%), Positives = 55/135 (40%), Gaps = 15/135 (11%)
Query: 21 GALGPQPFQSEPGLPGWSPPRASRGLTHKWQHPWPKPPHSWAASWPEEGRQCSSGLL-PK 79
G GP+ F + G+PG + P +GL + P P + EEG + G L P+
Sbjct: 765 GPPGPEGFPGDIGIPGQNGPEGPKGLL---GNRGPPGPPGLKGTQGEEGPIGAFGELGPR 821
Query: 80 PLLGLRTVGSGWGLNISFGLLTQSMKQDHGPERGAGFLGAGLKSSLP-QMGWALTLRELQ 138
G + G + +K + G + G +G LP ++G ++ E
Sbjct: 822 GKPGQKGYAGEPG--------PEGLKGEVGDQGNIGKIGETGPVGLPGEVGMTGSIGE-- 871
Query: 139 MGELGAPQASGHWGQ 153
GE G+P G G+
Sbjct: 872 KGERGSPGPLGPQGE 886
>gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens]
Length = 1860
Score = 30.8 bits (68), Expect = 0.74
Identities = 41/145 (28%), Positives = 60/145 (41%), Gaps = 30/145 (20%)
Query: 20 RGALGPQPFQSEPGLPGWSPPRASRGLTHKWQHPWPKPPHSWAASWPEEGRQCSSGLLPK 79
RG LG + F PG+PG S P ++GL + P P+ P E G + G + +
Sbjct: 1104 RGHLGSRGF---PGIPGPSGPPGTKGLPGE---PGPQGPQGPIGPPGEMGPKGPPGAVGE 1157
Query: 80 PLL----GLRTVGSGWGLNISFGLLTQSMKQDHGPERGAGFLGA-GLKSSLPQMGWALTL 134
P L G++ G GL+ Q + + G E +G +G GLK
Sbjct: 1158 PGLPGEAGMKGDLGPLGTPGEQGLIGQ--RGEPGLEGDSGPMGPDGLK------------ 1203
Query: 135 RELQMGELGAPQASGHWGQPEEEGL 159
G+ G P G G+ +EGL
Sbjct: 1204 -----GDRGDPGPDGEHGEKGQEGL 1223
Score = 30.4 bits (67), Expect = 0.97
Identities = 49/172 (28%), Positives = 61/172 (35%), Gaps = 41/172 (23%)
Query: 20 RGALGPQPFQSEPGLPGWSPPRASRGLT----------HKWQHPWPKPPHSWAASWPE-- 67
RG +G + + EPG PG+ +GL H WP P S A P+
Sbjct: 1348 RGPVGDRGDRGEPGDPGYPGQEGVQGLRGKPGQQGQPGHPGPRGWPGPKGSKGAEGPKGK 1407
Query: 68 ------EGRQCSSGL--LPKP-----LLGLRTVGSGWGLNISFGLLTQSMKQ----DHGP 110
GR+ GL LP P GL + GL G Q +Q D GP
Sbjct: 1408 QGKAGAPGRRGVQGLQGLPGPRGVVGRQGLEGIAGPDGLPGRDGQAGQQGEQGDDGDPGP 1467
Query: 111 ERGAGFLG----AGLKSSLPQMGWALTLRELQMGELGAPQASGHWGQPEEEG 158
AG G AGL + G+ GE G P G G+ EG
Sbjct: 1468 MGPAGKRGNPGVAGLPGAQGPPGF--------KGESGLPGQLGPPGKRGTEG 1511
>gi|45439370 TAO kinase 1 [Homo sapiens]
Length = 1001
Score = 30.8 bits (68), Expect = 0.74
Identities = 25/75 (33%), Positives = 32/75 (42%), Gaps = 5/75 (6%)
Query: 23 LGPQPFQ-SEPGLPGWSPPRASRGLTHKWQHPWPKPPHSWAASWPEEGRQCSSGLLPKPL 81
L P+ F S PG GWS + G W HP PP +W P +G G P+
Sbjct: 895 LSPEAFSHSYPGASGWSH-NPTGGPGPHWGHPMGGPPQAW--GHPMQGGPQPWGHPSGPM 951
Query: 82 LGLRTVGSGWGLNIS 96
G+ GS G+ S
Sbjct: 952 QGVPR-GSSMGVRNS 965
>gi|194294532 alpha 1 type XIII collagen isoform 20 [Homo sapiens]
Length = 717
Score = 30.8 bits (68), Expect = 0.74
Identities = 40/156 (25%), Positives = 52/156 (33%), Gaps = 19/156 (12%)
Query: 3 LGQPASKSQWVRKENRGRGALGPQPFQSEPGLPGWSPPRASRGLTHKWQHPWPKPPHSWA 62
LGQ K GRG GP PGLPG P+ G+ + P
Sbjct: 367 LGQKGEKGDAGNSIGGGRGEPGP------PGLPGPPGPKGEAGVDGQVGPPGQPGDKGER 420
Query: 63 ASWPEEGRQCSSGLLPKPLLGLRTVGSGWGLNISFGLLTQSMKQDHGPERGAGFLGAGLK 122
+ E+G G +P G +G NI+ L GP G +G
Sbjct: 421 GAAGEQGPDGPKGSKGEPGKGEMVDYNG---NINEALQEIRTLALMGPPGLPGQIGPPGA 477
Query: 123 SSLPQMGWALTLRELQMGELGAPQASGHWGQPEEEG 158
+P Q GE+G P GH G+ G
Sbjct: 478 PGIPG----------QKGEIGLPGPPGHDGEKGPRG 503
>gi|22027609 alpha 1 type XIII collagen isoform 19 [Homo sapiens]
Length = 610
Score = 30.8 bits (68), Expect = 0.74
Identities = 40/156 (25%), Positives = 52/156 (33%), Gaps = 19/156 (12%)
Query: 3 LGQPASKSQWVRKENRGRGALGPQPFQSEPGLPGWSPPRASRGLTHKWQHPWPKPPHSWA 62
LGQ K GRG GP PGLPG P+ G+ + P
Sbjct: 316 LGQKGEKGDAGNSIGGGRGEPGP------PGLPGPPGPKGEAGVDGQVGPPGQPGDKGER 369
Query: 63 ASWPEEGRQCSSGLLPKPLLGLRTVGSGWGLNISFGLLTQSMKQDHGPERGAGFLGAGLK 122
+ E+G G +P G +G NI+ L GP G +G
Sbjct: 370 GAAGEQGPDGPKGSKGEPGKGEMVDYNG---NINEALQEIRTLALMGPPGLPGQIGPPGA 426
Query: 123 SSLPQMGWALTLRELQMGELGAPQASGHWGQPEEEG 158
+P Q GE+G P GH G+ G
Sbjct: 427 PGIPG----------QKGEIGLPGPPGHDGEKGPRG 452
>gi|22027607 alpha 1 type XIII collagen isoform 18 [Homo sapiens]
Length = 655
Score = 30.8 bits (68), Expect = 0.74
Identities = 40/156 (25%), Positives = 52/156 (33%), Gaps = 19/156 (12%)
Query: 3 LGQPASKSQWVRKENRGRGALGPQPFQSEPGLPGWSPPRASRGLTHKWQHPWPKPPHSWA 62
LGQ K GRG GP PGLPG P+ G+ + P
Sbjct: 305 LGQKGEKGDAGNSIGGGRGEPGP------PGLPGPPGPKGEAGVDGQVGPPGQPGDKGER 358
Query: 63 ASWPEEGRQCSSGLLPKPLLGLRTVGSGWGLNISFGLLTQSMKQDHGPERGAGFLGAGLK 122
+ E+G G +P G +G NI+ L GP G +G
Sbjct: 359 GAAGEQGPDGPKGSKGEPGKGEMVDYNG---NINEALQEIRTLALMGPPGLPGQIGPPGA 415
Query: 123 SSLPQMGWALTLRELQMGELGAPQASGHWGQPEEEG 158
+P Q GE+G P GH G+ G
Sbjct: 416 PGIPG----------QKGEIGLPGPPGHDGEKGPRG 441
>gi|22027605 alpha 1 type XIII collagen isoform 17 [Homo sapiens]
Length = 657
Score = 30.8 bits (68), Expect = 0.74
Identities = 40/156 (25%), Positives = 52/156 (33%), Gaps = 19/156 (12%)
Query: 3 LGQPASKSQWVRKENRGRGALGPQPFQSEPGLPGWSPPRASRGLTHKWQHPWPKPPHSWA 62
LGQ K GRG GP PGLPG P+ G+ + P
Sbjct: 307 LGQKGEKGDAGNSIGGGRGEPGP------PGLPGPPGPKGEAGVDGQVGPPGQPGDKGER 360
Query: 63 ASWPEEGRQCSSGLLPKPLLGLRTVGSGWGLNISFGLLTQSMKQDHGPERGAGFLGAGLK 122
+ E+G G +P G +G NI+ L GP G +G
Sbjct: 361 GAAGEQGPDGPKGSKGEPGKGEMVDYNG---NINEALQEIRTLALMGPPGLPGQIGPPGA 417
Query: 123 SSLPQMGWALTLRELQMGELGAPQASGHWGQPEEEG 158
+P Q GE+G P GH G+ G
Sbjct: 418 PGIPG----------QKGEIGLPGPPGHDGEKGPRG 443
>gi|22027603 alpha 1 type XIII collagen isoform 16 [Homo sapiens]
Length = 660
Score = 30.8 bits (68), Expect = 0.74
Identities = 40/156 (25%), Positives = 52/156 (33%), Gaps = 19/156 (12%)
Query: 3 LGQPASKSQWVRKENRGRGALGPQPFQSEPGLPGWSPPRASRGLTHKWQHPWPKPPHSWA 62
LGQ K GRG GP PGLPG P+ G+ + P
Sbjct: 310 LGQKGEKGDAGNSIGGGRGEPGP------PGLPGPPGPKGEAGVDGQVGPPGQPGDKGER 363
Query: 63 ASWPEEGRQCSSGLLPKPLLGLRTVGSGWGLNISFGLLTQSMKQDHGPERGAGFLGAGLK 122
+ E+G G +P G +G NI+ L GP G +G
Sbjct: 364 GAAGEQGPDGPKGSKGEPGKGEMVDYNG---NINEALQEIRTLALMGPPGLPGQIGPPGA 420
Query: 123 SSLPQMGWALTLRELQMGELGAPQASGHWGQPEEEG 158
+P Q GE+G P GH G+ G
Sbjct: 421 PGIPG----------QKGEIGLPGPPGHDGEKGPRG 446
>gi|22027601 alpha 1 type XIII collagen isoform 15 [Homo sapiens]
Length = 668
Score = 30.8 bits (68), Expect = 0.74
Identities = 40/156 (25%), Positives = 52/156 (33%), Gaps = 19/156 (12%)
Query: 3 LGQPASKSQWVRKENRGRGALGPQPFQSEPGLPGWSPPRASRGLTHKWQHPWPKPPHSWA 62
LGQ K GRG GP PGLPG P+ G+ + P
Sbjct: 345 LGQKGEKGDAGNSIGGGRGEPGP------PGLPGPPGPKGEAGVDGQVGPPGQPGDKGER 398
Query: 63 ASWPEEGRQCSSGLLPKPLLGLRTVGSGWGLNISFGLLTQSMKQDHGPERGAGFLGAGLK 122
+ E+G G +P G +G NI+ L GP G +G
Sbjct: 399 GAAGEQGPDGPKGSKGEPGKGEMVDYNG---NINEALQEIRTLALMGPPGLPGQIGPPGA 455
Query: 123 SSLPQMGWALTLRELQMGELGAPQASGHWGQPEEEG 158
+P Q GE+G P GH G+ G
Sbjct: 456 PGIPG----------QKGEIGLPGPPGHDGEKGPRG 481
>gi|22027599 alpha 1 type XIII collagen isoform 14 [Homo sapiens]
Length = 664
Score = 30.8 bits (68), Expect = 0.74
Identities = 40/156 (25%), Positives = 52/156 (33%), Gaps = 19/156 (12%)
Query: 3 LGQPASKSQWVRKENRGRGALGPQPFQSEPGLPGWSPPRASRGLTHKWQHPWPKPPHSWA 62
LGQ K GRG GP PGLPG P+ G+ + P
Sbjct: 314 LGQKGEKGDAGNSIGGGRGEPGP------PGLPGPPGPKGEAGVDGQVGPPGQPGDKGER 367
Query: 63 ASWPEEGRQCSSGLLPKPLLGLRTVGSGWGLNISFGLLTQSMKQDHGPERGAGFLGAGLK 122
+ E+G G +P G +G NI+ L GP G +G
Sbjct: 368 GAAGEQGPDGPKGSKGEPGKGEMVDYNG---NINEALQEIRTLALMGPPGLPGQIGPPGA 424
Query: 123 SSLPQMGWALTLRELQMGELGAPQASGHWGQPEEEG 158
+P Q GE+G P GH G+ G
Sbjct: 425 PGIPG----------QKGEIGLPGPPGHDGEKGPRG 450
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.135 0.461
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,421,247
Number of Sequences: 37866
Number of extensions: 628529
Number of successful extensions: 2471
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 107
Number of HSP's that attempted gapping in prelim test: 1946
Number of HSP's gapped (non-prelim): 582
length of query: 191
length of database: 18,247,518
effective HSP length: 96
effective length of query: 95
effective length of database: 14,612,382
effective search space: 1388176290
effective search space used: 1388176290
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.