Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: PRR19 Sequence: fasta or formatted (356aa) NCBI GI: 51093874
Description:

proline rich 19

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.2         22           1
 C cysteine            1.1          4           1
 D aspartate           3.1         11           1
 E glutamate           3.7         13           1
 F phenylalanine       2.5          9           1
 G glycine             7.0         25           2
 H histidine           2.0          7           2
 I isoleucine          1.7          6           1
 K lysine              3.4         12           1
 L leucine             9.8         35           2
 M methionine          1.4          5           1
 N asparagine          1.4          5           1
 P proline            18.0         64           4
 Q glutamine           6.2         22           2
 R arginine            8.1         29           3
 S serine             10.4         37           2
 T threonine           4.5         16           1
 V valine              6.5         23           2
 W tryptophan          2.2          8           1
 Y tyrosine            0.8          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   proline rich 19 
FLJ22184              0.037   PREDICTED: hypothetical protein FLJ22184 
DIAPH1                0.036   diaphanous 1 isoform 2 
DIAPH1                0.036   diaphanous 1 isoform 1 
NACA                  0.035   nascent polypeptide-associated complex alpha subuni...
RAPH1                 0.033   Ras association and pleckstrin homology domains 1 is...
FLJ22184              0.032   PREDICTED: hypothetical protein FLJ22184 
FMN2                  0.032   formin 2 
RERE                  0.031   atrophin-1 like protein isoform b 
RERE                  0.031   atrophin-1 like protein isoform a 
RERE                  0.031   atrophin-1 like protein isoform a 
FLJ22184              0.029   PREDICTED: hypothetical protein LOC80164 
BCL9L                 0.029   B-cell CLL/lymphoma 9-like 
WASF2                 0.028   WAS protein family, member 2 
TICAM1                0.028   toll-like receptor adaptor molecule 1 
TAF4                  0.026   TBP-associated factor 4 
SMARCA4               0.026   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.026   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.026   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.026   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.026   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.026   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.026   SWI/SNF-related matrix-associated actin-dependent re...
WIPF1                 0.026   WAS/WASL interacting protein family, member 1 [Homo...
WIPF1                 0.026   WAS/WASL interacting protein family, member 1 
ZNF828                0.026   zinc finger protein 828 
SFPQ                  0.026   splicing factor proline/glutamine rich (polypyrimidin...
KIAA1602              0.026   hypothetical protein LOC57701 
WASF1                 0.025   Wiskott-Aldrich syndrome protein family member 1 [Ho...
WASF1                 0.025   Wiskott-Aldrich syndrome protein family member 1 [Ho...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press