Guide to the Human Genome
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Name: LOC100292164 Sequence: fasta or formatted (158aa) NCBI GI: 239752719
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.0         11           2
 C cysteine            1.9          3           2
 D aspartate           1.9          3           1
 E glutamate           7.0         11           3
 F phenylalanine       1.3          2           1
 G glycine            14.6         23           1
 H histidine           4.4          7           1
 I isoleucine          0.6          1           1
 K lysine              3.8          6           1
 L leucine            13.3         21           2
 M methionine          2.5          4           1
 N asparagine          1.3          2           1
 P proline             8.2         13           2
 Q glutamine           7.0         11           1
 R arginine            3.8          6           1
 S serine              9.5         15           2
 T threonine           3.8          6           1
 V valine              2.5          4           1
 W tryptophan          5.7          9           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100293267          0.899   PREDICTED: hypothetical protein 
LOC100289081          0.686   PREDICTED: hypothetical protein XP_002342086 
SPSB2                 0.019   splA/ryanodine receptor domain and SOCS box contain...
SPSB2                 0.019   splA/ryanodine receptor domain and SOCS box contain...
SPSB2                 0.019   splA/ryanodine receptor domain and SOCS box containi...
DLL3                  0.016   delta-like 3 protein isoform 1 precursor 
DLL3                  0.016   delta-like 3 protein isoform 2 precursor 
MSLNL                 0.016   mesothelin-like 
LOC729660             0.013   PREDICTED: similar to Putative uncharacterized prot...
COL19A1               0.013   alpha 1 type XIX collagen precursor 
COL7A1                0.013   alpha 1 type VII collagen precursor 
FCN2                  0.013   ficolin 2 isoform b precursor 
MAP3K14               0.009   mitogen-activated protein kinase kinase kinase 14 [...
LOC100291309          0.009   PREDICTED: hypothetical protein XP_002347389 
LOC100288928          0.009   PREDICTED: hypothetical protein 
LOC100287749          0.009   PREDICTED: hypothetical protein XP_002343252 
LOC100288928          0.009   PREDICTED: hypothetical protein XP_002342353 
LOC100293760          0.009   PREDICTED: similar to hCG2002168 
LOC100287869          0.009   PREDICTED: similar to hCG2002168 
LOC100287869          0.009   PREDICTED: hypothetical protein XP_002342644 
BIRC7                 0.009   livin inhibitor of apoptosis isoform beta 
BIRC7                 0.009   livin inhibitor of apoptosis isoform alpha 
PRR19                 0.009   proline rich 19 
PKD1                  0.006   polycystin 1 isoform 2 precursor 
PKD1                  0.006   polycystin 1 isoform 1 precursor 
STARD9                0.006   PREDICTED: StAR-related lipid transfer (START) doma...
LOC100129619          0.006   PREDICTED: hypothetical protein 
STARD9                0.006   PREDICTED: StAR-related lipid transfer (START) doma...
LOC100129619          0.006   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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