LOC100291878 21565

Name: LOC100291878	Sequence: fasta or formatted (1183aa)		NCBI GI: 239753314
Description: PREDICTED: similar to RIKEN cDNA C230030N03		Not currently referenced in the text
Composition: Amino acid Percentage Count Longest homopolymer A alanine 8.9 105 4 C cysteine 1.9 23 2 D aspartate 3.7 44 2 E glutamate 8.4 99 2 F phenylalanine 1.8 21 2 G glycine 9.6 114 3 H histidine 2.5 30 2 I isoleucine 1.6 19 1 K lysine 4.2 50 2 L leucine 8.5 100 2 M methionine 0.6 7 1 N asparagine 1.8 21 1 P proline 10.6 125 2 Q glutamine 5.1 60 2 R arginine 6.9 82 2 S serine 11.4 135 3 T threonine 5.7 68 2 V valine 4.1 49 2 W tryptophan 1.6 19 1 Y tyrosine 1.0 12 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 PREDICTED: similar to RIKEN cDNA C230030N03 COL7A1 0.017 alpha 1 type VII collagen precursor ZNF469 0.015 zinc finger protein 469 COL1A1 0.015 alpha 1 type I collagen preproprotein COL11A1 0.013 alpha 1 type XI collagen isoform B preproprotein [Ho... COL11A1 0.013 alpha 1 type XI collagen isoform C preproprotein [Ho... COL11A1 0.013 alpha 1 type XI collagen isoform A preproprotein [Ho... NEFH 0.013 neurofilament, heavy polypeptide 200kDa COL5A1 0.013 alpha 1 type V collagen preproprotein COL1A2 0.013 alpha 2 type I collagen MAPK8IP2 0.013 mitogen-activated protein kinase 8 interacting protei... MAPK8IP2 0.013 mitogen-activated protein kinase 8 interacting protei... COL28A1 0.012 collagen, type XXVIII precursor COL3A1 0.012 collagen type III alpha 1 preproprotein COL8A2 0.012 collagen, type VIII, alpha 2 COL10A1 0.012 type X collagen alpha 1 precursor COL5A3 0.011 collagen, type V, alpha 3 preproprotein COL16A1 0.011 alpha 1 type XVI collagen precursor COL5A2 0.010 alpha 2 type V collagen preproprotein COL13A1 0.010 alpha 1 type XIII collagen isoform 20 COL13A1 0.010 alpha 1 type XIII collagen isoform 18 COL13A1 0.010 alpha 1 type XIII collagen isoform 17 COL13A1 0.010 alpha 1 type XIII collagen isoform 16 COL13A1 0.010 alpha 1 type XIII collagen isoform 14 COL13A1 0.010 alpha 1 type XIII collagen isoform 10 COL13A1 0.010 alpha 1 type XIII collagen isoform 9 COL13A1 0.010 alpha 1 type XIII collagen isoform 6 COL13A1 0.010 alpha 1 type XIII collagen isoform 5 COL13A1 0.010 alpha 1 type XIII collagen isoform 4 COL13A1 0.010 alpha 1 type XIII collagen isoform 3 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.