Guide to the Human Genome
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Name: DNAJC6 Sequence: fasta or formatted (913aa) NCBI GI: 7662146
Description:

DnaJ (Hsp40) homolog, subfamily C, member 6

Referenced in:

Heat-Shock Proteins and Chaperonins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.0         55           2
 C cysteine            1.4         13           1
 D aspartate           5.9         54           2
 E glutamate           4.4         40           2
 F phenylalanine       4.4         40           2
 G glycine             8.2         75           4
 H histidine           2.8         26           1
 I isoleucine          3.4         31           2
 K lysine              6.2         57           2
 L leucine             7.9         72           2
 M methionine          2.3         21           1
 N asparagine          3.8         35           1
 P proline             9.1         83           4
 Q glutamine           5.4         49           2
 R arginine            3.7         34           2
 S serine             10.0         91           3
 T threonine           5.9         54           2
 V valine              5.0         46           3
 W tryptophan          1.3         12           1
 Y tyrosine            2.7         25           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   DnaJ (Hsp40) homolog, subfamily C, member 6 
GAK                   0.402   cyclin G associated kinase 
TNS3                  0.052   tensin 3 
TENC1                 0.051   tensin like C1 domain containing phosphatase isoform...
TENC1                 0.051   tensin like C1 domain containing phosphatase isoform...
TENC1                 0.051   tensin like C1 domain containing phosphatase isoform...
TNS1                  0.051   tensin 
PTEN                  0.045   phosphatase and tensin homolog 
TPTE2                 0.042   TPTE and PTEN homologous inositol lipid phosphatase...
TPTE2                 0.042   TPTE and PTEN homologous inositol lipid phosphatase...
TPTE2                 0.042   TPTE and PTEN homologous inositol lipid phosphatase...
TPTE                  0.039   transmembrane phosphatase with tensin homology isofo...
TPTE                  0.039   transmembrane phosphatase with tensin homology isofo...
TPTE                  0.039   transmembrane phosphatase with tensin homology isof...
NACA                  0.018   nascent polypeptide-associated complex alpha subuni...
PRB2                  0.016   proline-rich protein BstNI subfamily 2 
ARID1B                0.016   AT rich interactive domain 1B (SWI1-like) isoform 1 ...
ARID1B                0.016   AT rich interactive domain 1B (SWI1-like) isoform 3 ...
PRB1                  0.016   proline-rich protein BstNI subfamily 1 isoform 1 pre...
ARID1B                0.016   AT rich interactive domain 1B (SWI1-like) isoform 2 ...
ARHGAP17              0.014   nadrin isoform 1 
ARHGAP17              0.014   nadrin isoform 2 
LOC100133756          0.014   PREDICTED: hypothetical protein, partial 
SNAP91                0.014   synaptosomal-associated protein, 91kDa homolog 
PRB3                  0.014   proline-rich protein BstNI subfamily 3 precursor [H...
CNOT3                 0.013   CCR4-NOT transcription complex, subunit 3 
POLR2A                0.013   DNA-directed RNA polymerase II A 
POM121C               0.013   POM121 membrane glycoprotein (rat)-like 
FAM65A                0.013   hypothetical protein LOC79567 
POM121                0.012   nuclear pore membrane protein 121 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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