Guide to the Human Genome
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Name: LOC100289081 Sequence: fasta or formatted (155aa) NCBI GI: 239741081
Description:

PREDICTED: hypothetical protein XP_002342086

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.4         13           2
 C cysteine            2.6          4           2
 D aspartate           1.9          3           1
 E glutamate           7.7         12           4
 F phenylalanine       1.3          2           1
 G glycine            14.8         23           1
 H histidine           3.2          5           1
 I isoleucine          0.6          1           1
 K lysine              2.6          4           1
 L leucine            14.8         23           2
 M methionine          3.2          5           1
 N asparagine          0.6          1           1
 P proline             7.1         11           1
 Q glutamine           7.7         12           1
 R arginine            3.9          6           1
 S serine              7.7         12           2
 T threonine           5.8          9           2
 V valine              2.6          4           1
 W tryptophan          3.2          5           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002342086 
LOC100292164          0.727   PREDICTED: hypothetical protein 
LOC100293267          0.693   PREDICTED: hypothetical protein 
DLL3                  0.017   delta-like 3 protein isoform 1 precursor 
DLL3                  0.017   delta-like 3 protein isoform 2 precursor 
RNF149                0.013   ring finger protein 149 
GPR68                 0.013   G protein-coupled receptor 68 
STARD9                0.010   PREDICTED: StAR-related lipid transfer (START) doma...
STARD9                0.010   PREDICTED: StAR-related lipid transfer (START) doma...
STARD9                0.010   PREDICTED: StAR-related lipid transfer (START) doma...
LOC100291309          0.010   PREDICTED: hypothetical protein XP_002347389 
LOC100287749          0.010   PREDICTED: hypothetical protein XP_002343252 
GRM5                  0.010   glutamate receptor, metabotropic 5 isoform a precur...
GRM5                  0.010   glutamate receptor, metabotropic 5 isoform b precurso...
FCN2                  0.010   ficolin 2 isoform b precursor 
CTDP1                 0.007   CTD (carboxy-terminal domain, RNA polymerase II, pol...
CTDP1                 0.007   CTD (carboxy-terminal domain, RNA polymerase II, pol...
HRC                   0.007   histidine rich calcium binding protein precursor [Hom...
MIA2                  0.007   melanoma inhibitory activity 2 
GIGYF1                0.007   PERQ amino acid rich, with GYF domain 1 
LOC100293437          0.007   PREDICTED: hypothetical protein 
LOC100291237          0.007   PREDICTED: hypothetical protein XP_002347546 
LOC100289532          0.007   PREDICTED: hypothetical protein XP_002342183 
NPR1                  0.007   natriuretic peptide receptor 1 
CASKIN2               0.007   cask-interacting protein 2 isoform b 
CASKIN2               0.007   cask-interacting protein 2 isoform a 
KBTBD5                0.007   kelch repeat and BTB (POZ) domain containing 5 [Homo...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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