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Search of human proteins with 239752293
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239752293 PREDICTED: hypothetical protein [Homo sapiens]
(97 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239757784 PREDICTED: hypothetical protein XP_002346335 [Homo ... 203 2e-53
gi|239752293 PREDICTED: hypothetical protein [Homo sapiens] 203 2e-53
gi|239746804 PREDICTED: hypothetical protein XP_002343853 [Homo ... 203 2e-53
gi|188536004 zinc finger protein 469 [Homo sapiens] 37 0.004
gi|32307132 NFS1 nitrogen fixation 1 [Homo sapiens] 37 0.004
gi|41281683 disabled homolog 2 interacting protein isoform 2 [Ho... 34 0.029
gi|94967023 disabled homolog 2 interacting protein isoform 1 [Ho... 34 0.029
gi|171543895 ataxin 2 [Homo sapiens] 34 0.029
gi|187761324 shootin1 isoform a [Homo sapiens] 33 0.037
gi|50511340 shootin1 isoform b [Homo sapiens] 33 0.037
gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens] 33 0.049
gi|239752594 PREDICTED: hypothetical protein, partial [Homo sapi... 33 0.064
gi|110832843 TBP-associated factor 4 [Homo sapiens] 33 0.064
gi|22027541 programmed cell death 7 [Homo sapiens] 33 0.064
gi|72004269 tetra-peptide repeat homeobox [Homo sapiens] 32 0.083
gi|89063265 PREDICTED: similar to MHC class I antigen [Homo sapi... 32 0.11
gi|91208420 bassoon protein [Homo sapiens] 32 0.11
gi|37693995 Kruppel-like factor 13 [Homo sapiens] 32 0.11
gi|149158690 HLA-B associated transcript-2 [Homo sapiens] 32 0.14
gi|51477700 mediator complex subunit 15 isoform a [Homo sapiens] 32 0.14
gi|21312134 mediator complex subunit 15 isoform b [Homo sapiens] 32 0.14
gi|239754327 PREDICTED: chromosome 6 open reading frame 132 [Hom... 31 0.24
gi|239748855 PREDICTED: chromosome 6 open reading frame 132 [Hom... 31 0.24
gi|239742884 PREDICTED: hypothetical protein LOC647024 [Homo sap... 31 0.24
gi|27436984 potassium voltage-gated channel, Shal-related subfam... 31 0.24
gi|27436986 potassium voltage-gated channel, Shal-related subfam... 31 0.24
gi|155030232 proline, glutamic acid and leucine rich protein 1 [... 31 0.24
gi|122937496 WAS/WASL interacting protein family, member 3 [Homo... 31 0.24
gi|208022661 hypothetical protein LOC57701 [Homo sapiens] 31 0.24
gi|33356148 formin-like 1 [Homo sapiens] 31 0.24
>gi|239757784 PREDICTED: hypothetical protein XP_002346335 [Homo
sapiens]
Length = 97
Score = 203 bits (517), Expect = 2e-53
Identities = 97/97 (100%), Positives = 97/97 (100%)
Query: 1 MESLKFQSKEEIRNTSHRANVTKRNSANRKTDAILATPGPPPAQPQGGGRLRAPPSPAPS 60
MESLKFQSKEEIRNTSHRANVTKRNSANRKTDAILATPGPPPAQPQGGGRLRAPPSPAPS
Sbjct: 1 MESLKFQSKEEIRNTSHRANVTKRNSANRKTDAILATPGPPPAQPQGGGRLRAPPSPAPS 60
Query: 61 SGLLSQVWQPSAAPWYGPFSGPLLRKEQKRNPRKGTG 97
SGLLSQVWQPSAAPWYGPFSGPLLRKEQKRNPRKGTG
Sbjct: 61 SGLLSQVWQPSAAPWYGPFSGPLLRKEQKRNPRKGTG 97
>gi|239752293 PREDICTED: hypothetical protein [Homo sapiens]
Length = 97
Score = 203 bits (517), Expect = 2e-53
Identities = 97/97 (100%), Positives = 97/97 (100%)
Query: 1 MESLKFQSKEEIRNTSHRANVTKRNSANRKTDAILATPGPPPAQPQGGGRLRAPPSPAPS 60
MESLKFQSKEEIRNTSHRANVTKRNSANRKTDAILATPGPPPAQPQGGGRLRAPPSPAPS
Sbjct: 1 MESLKFQSKEEIRNTSHRANVTKRNSANRKTDAILATPGPPPAQPQGGGRLRAPPSPAPS 60
Query: 61 SGLLSQVWQPSAAPWYGPFSGPLLRKEQKRNPRKGTG 97
SGLLSQVWQPSAAPWYGPFSGPLLRKEQKRNPRKGTG
Sbjct: 61 SGLLSQVWQPSAAPWYGPFSGPLLRKEQKRNPRKGTG 97
>gi|239746804 PREDICTED: hypothetical protein XP_002343853 [Homo
sapiens]
Length = 97
Score = 203 bits (517), Expect = 2e-53
Identities = 97/97 (100%), Positives = 97/97 (100%)
Query: 1 MESLKFQSKEEIRNTSHRANVTKRNSANRKTDAILATPGPPPAQPQGGGRLRAPPSPAPS 60
MESLKFQSKEEIRNTSHRANVTKRNSANRKTDAILATPGPPPAQPQGGGRLRAPPSPAPS
Sbjct: 1 MESLKFQSKEEIRNTSHRANVTKRNSANRKTDAILATPGPPPAQPQGGGRLRAPPSPAPS 60
Query: 61 SGLLSQVWQPSAAPWYGPFSGPLLRKEQKRNPRKGTG 97
SGLLSQVWQPSAAPWYGPFSGPLLRKEQKRNPRKGTG
Sbjct: 61 SGLLSQVWQPSAAPWYGPFSGPLLRKEQKRNPRKGTG 97
>gi|188536004 zinc finger protein 469 [Homo sapiens]
Length = 3925
Score = 36.6 bits (83), Expect = 0.004
Identities = 25/68 (36%), Positives = 32/68 (47%), Gaps = 16/68 (23%)
Query: 32 DAILATPGPPPAQPQG---GGRLRA--------PP-----SPAPSSGLLSQVWQPSAAPW 75
D + +T GPP + PQ G RA PP +P P L Q+W P+AAP+
Sbjct: 389 DGLGSTRGPPSSLPQRHFPGQAYRASGVDTSPGPPDTELAAPGPPPARLPQLWDPTAAPY 448
Query: 76 YGPFSGPL 83
P GPL
Sbjct: 449 PTPPGGPL 456
>gi|32307132 NFS1 nitrogen fixation 1 [Homo sapiens]
Length = 457
Score = 36.6 bits (83), Expect = 0.004
Identities = 27/73 (36%), Positives = 31/73 (42%), Gaps = 12/73 (16%)
Query: 24 RNSANRKTDAILATPGPPPAQPQGGGRL----RAPPSPAPSSGLLSQVWQPSAAPWYGPF 79
R + R A+ A PGP PA P G RL RAP S P+ +AAP GP
Sbjct: 4 RAAWRRAAVAVTAAPGPKPAAPTRGLRLRVGDRAPQSAVPA--------DTAAAPEVGPV 55
Query: 80 SGPLLRKEQKRNP 92
PL Q P
Sbjct: 56 LRPLYMDVQATTP 68
>gi|41281683 disabled homolog 2 interacting protein isoform 2 [Homo
sapiens]
Length = 1065
Score = 33.9 bits (76), Expect = 0.029
Identities = 31/85 (36%), Positives = 40/85 (47%), Gaps = 23/85 (27%)
Query: 21 VTKRNSAN--RKTDAILATPGPPPAQPQGGGRLRAPPS-------PAPSSGLLSQVWQPS 71
V ++NSA R+ D P PPP P R R PP+ P PSSG L+ S
Sbjct: 781 VPRQNSAGPQRRIDQ----PPPPPPPPPPAPRGRTPPNLLSTLQYPRPSSGTLA-----S 831
Query: 72 AAP-WYGPFSGPLLRKEQKRNPRKG 95
A+P W GP + R Q+ + KG
Sbjct: 832 ASPDWVGPST----RLRQQSSSSKG 852
>gi|94967023 disabled homolog 2 interacting protein isoform 1 [Homo
sapiens]
Length = 1132
Score = 33.9 bits (76), Expect = 0.029
Identities = 31/85 (36%), Positives = 40/85 (47%), Gaps = 23/85 (27%)
Query: 21 VTKRNSAN--RKTDAILATPGPPPAQPQGGGRLRAPPS-------PAPSSGLLSQVWQPS 71
V ++NSA R+ D P PPP P R R PP+ P PSSG L+ S
Sbjct: 877 VPRQNSAGPQRRIDQ----PPPPPPPPPPAPRGRTPPNLLSTLQYPRPSSGTLA-----S 927
Query: 72 AAP-WYGPFSGPLLRKEQKRNPRKG 95
A+P W GP + R Q+ + KG
Sbjct: 928 ASPDWVGPST----RLRQQSSSSKG 948
>gi|171543895 ataxin 2 [Homo sapiens]
Length = 1313
Score = 33.9 bits (76), Expect = 0.029
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 35 LATPGPPPAQPQGGGRLRAPPSPAPSSGLLSQ----VWQPSAAPWYGPFSGPLLRKEQKR 90
LA+PG PPA P L A SP S L++ +P+ P YGP + L ++Q++
Sbjct: 111 LASPGAPPAAPTRASPLGARASPPRSGVSLARPAPGCPRPACEPVYGPLTMSLKPQQQQQ 170
Query: 91 NPRK 94
++
Sbjct: 171 QQQQ 174
>gi|187761324 shootin1 isoform a [Homo sapiens]
Length = 631
Score = 33.5 bits (75), Expect = 0.037
Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 16/90 (17%)
Query: 4 LKFQSKEE-IRNTSHRANVTKRNSANRKTDAILATPGPPPAQPQGGGRLRAPPSPAPSSG 62
LK+Q+ EE RN H + ++ N+ +++ P PPP P PP P P
Sbjct: 322 LKYQNSEEKARNLKHSVDELQKR-VNQSENSVPPPPPPPPPLP--------PPPPNPIRS 372
Query: 63 LLSQVWQPSAAPWYGPFSGPLLRKEQKRNP 92
L+S + + S SG +KE+ P
Sbjct: 373 LMSMIRKRSHP------SGSGAKKEKATQP 396
>gi|50511340 shootin1 isoform b [Homo sapiens]
Length = 456
Score = 33.5 bits (75), Expect = 0.037
Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 16/90 (17%)
Query: 4 LKFQSKEE-IRNTSHRANVTKRNSANRKTDAILATPGPPPAQPQGGGRLRAPPSPAPSSG 62
LK+Q+ EE RN H + ++ N+ +++ P PPP P PP P P
Sbjct: 322 LKYQNSEEKARNLKHSVDELQKR-VNQSENSVPPPPPPPPPLP--------PPPPNPIRS 372
Query: 63 LLSQVWQPSAAPWYGPFSGPLLRKEQKRNP 92
L+S + + S SG +KE+ P
Sbjct: 373 LMSMIRKRSHP------SGSGAKKEKATQP 396
>gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens]
Length = 538
Score = 33.1 bits (74), Expect = 0.049
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Query: 5 KFQSKEEIRNTSHRANVTKRNSANRKTDAILATPGPPPAQPQGGGRLRA----PPSPAP 59
K + + S++ +++ RN+A + ATP PP P+G A PP+PAP
Sbjct: 75 KLIQQRAVLRVSYKGSISYRNAARVQPPRRGATPPAPPRAPRGAPAAAAAAAPPPTPAP 133
Score = 29.6 bits (65), Expect = 0.54
Identities = 20/53 (37%), Positives = 24/53 (45%), Gaps = 10/53 (18%)
Query: 33 AILATPGPPPAQPQGGGRLRAP---PSPAPSSGLLSQVWQPSAAPWYGPFSGP 82
A A P P PAQP + AP P PAP++ P+ AP GP P
Sbjct: 155 AATAPPSPGPAQPGPRAQRAAPLAAPPPAPAA-------PPAVAPPAGPRRAP 200
Score = 25.8 bits (55), Expect = 7.8
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 38 PGPPPAQPQGGGRLRAPPSPAP 59
P PPP QP + + PP P P
Sbjct: 210 PLPPPPQPPAPPQQQQPPPPQP 231
>gi|239752594 PREDICTED: hypothetical protein, partial [Homo
sapiens]
Length = 673
Score = 32.7 bits (73), Expect = 0.064
Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Query: 8 SKEEIRNTSHRANVT--KRNSANRKTDAILATPGPPPAQPQGGGRLRAPPSPAPSSGLLS 65
S+ + T RA++T R S R +L T PP A P G R P+ PSS LL+
Sbjct: 552 SRASLTRTPSRASLTTPSRASLTRTPSTVLLTRMPPSASPTGMPS-RTSPTGMPSSALLT 610
Query: 66 QV 67
++
Sbjct: 611 KM 612
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 32.7 bits (73), Expect = 0.064
Identities = 13/23 (56%), Positives = 16/23 (69%)
Query: 40 PPPAQPQGGGRLRAPPSPAPSSG 62
PPPA Q GG A P+PAP++G
Sbjct: 298 PPPAAAQNGGSAGAAPAPAPAAG 320
Score = 27.3 bits (59), Expect = 2.7
Identities = 18/52 (34%), Positives = 22/52 (42%), Gaps = 9/52 (17%)
Query: 36 ATPGP----PPAQPQGGGRLRAPPSPAPSSGLLSQ-----VWQPSAAPWYGP 78
A P P PPA P APP P P+ L++ P+AAP P
Sbjct: 248 APPAPAAPSPPAAPAPAAPAAAPPPPPPAPATLARPPGHPAGPPTAAPAVPP 299
Score = 26.2 bits (56), Expect = 6.0
Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
Query: 36 ATPGPPPA---QPQGGGRLRAPPSPAPSSGLLSQVWQPSAAPWYGPFSG 81
A P PPPA +P GGG + P P+P L+ P AA P G
Sbjct: 85 AAPEPPPAGRARPGGGGP-QRPGPPSPRRPLVPAGPAPPAAKLRPPPEG 132
Score = 25.8 bits (55), Expect = 7.8
Identities = 20/55 (36%), Positives = 23/55 (41%), Gaps = 12/55 (21%)
Query: 33 AILATPGPPPA---QPQGGGRL--RAPPSPAPSSGLLSQVWQPSAAPWYGPFSGP 82
A+ A P P PA +P G L RA P P P G P P G +GP
Sbjct: 145 AVAAGPEPAPAGPAKPAGPAALAARAGPGPGPGPG-------PGPGPGPGKPAGP 192
>gi|22027541 programmed cell death 7 [Homo sapiens]
Length = 485
Score = 32.7 bits (73), Expect = 0.064
Identities = 21/59 (35%), Positives = 23/59 (38%), Gaps = 8/59 (13%)
Query: 38 PGPPPAQPQGGGRLRAPPSPAPSSGLLSQVWQPSAAPWYGPFSG---PLLRKEQKRNPR 93
PGPPP QP PP P P S + P GPF G P L+ PR
Sbjct: 12 PGPPPPQPPPPAPFGCPPPPLP-----SPAFPPPLPQRPGPFPGASAPFLQPPLALQPR 65
>gi|72004269 tetra-peptide repeat homeobox [Homo sapiens]
Length = 411
Score = 32.3 bits (72), Expect = 0.083
Identities = 23/68 (33%), Positives = 29/68 (42%), Gaps = 8/68 (11%)
Query: 33 AILATPGPPPAQPQGGGRLRAP-----PSPAPSSGLLSQVWQPSAAPWYGPFSGPLLRKE 87
A+ PGP PA G ++ P P P P +Q+ P AP GP SGP+
Sbjct: 91 ALSPGPGPIPAPIPGPAQIPGPLPGSIPGPIPGP---AQIPSPIPAPIPGPISGPVQIPG 147
Query: 88 QKRNPRKG 95
R P G
Sbjct: 148 PFRGPIPG 155
Score = 32.3 bits (72), Expect = 0.083
Identities = 19/45 (42%), Positives = 21/45 (46%)
Query: 38 PGPPPAQPQGGGRLRAPPSPAPSSGLLSQVWQPSAAPWYGPFSGP 82
P P PAQ G GRL+ P + S P AP GP SGP
Sbjct: 268 PIPSPAQIPGPGRLQGPGPILSPGRMRSPGSLPGLAPILGPGSGP 312
Score = 26.2 bits (56), Expect = 6.0
Identities = 20/60 (33%), Positives = 23/60 (38%), Gaps = 14/60 (23%)
Query: 38 PGPPPAQPQGGGRLRAP---------PSPAPSSGLLS-----QVWQPSAAPWYGPFSGPL 83
PGP Q G R P P P P SG S + P+ P GP SGP+
Sbjct: 136 PGPISGPVQIPGPFRGPIPGPISGPAPIPGPISGPFSGPNPGPIPGPNPGPIPGPISGPI 195
>gi|89063265 PREDICTED: similar to MHC class I antigen [Homo
sapiens]
Length = 366
Score = 32.0 bits (71), Expect = 0.11
Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Query: 29 RKTDAILATPGPPPAQPQGGGRLRAPPSPAPSSGLLSQVWQPSAAPWYG 77
R I + PGP PA GGR R+ PSP P S L + + P G
Sbjct: 9 RPPGPITSDPGPDPAPR--GGRARSHPSPPPGSHSLRYFYTAVSRPGLG 55
>gi|91208420 bassoon protein [Homo sapiens]
Length = 3926
Score = 32.0 bits (71), Expect = 0.11
Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Query: 39 GPPPAQPQGGGRLRAPPSPAPSSGLLSQVWQPSAAPWYGPFSGPLLRKEQKRNP 92
G PP+ P GGG+L P + A S + V P P GP G R+ + P
Sbjct: 34 GKPPSAPAGGGQL--PAAGAARSTAVPPVPGPGPGPGPGPGPGSTSRRLDPKEP 85
>gi|37693995 Kruppel-like factor 13 [Homo sapiens]
Length = 288
Score = 32.0 bits (71), Expect = 0.11
Identities = 20/61 (32%), Positives = 24/61 (39%)
Query: 30 KTDAILATPGPPPAQPQGGGRLRAPPSPAPSSGLLSQVWQPSAAPWYGPFSGPLLRKEQK 89
+T L P P P P G APPSPA S +P P P LR+ +
Sbjct: 93 RTPCRLPPPAPEPTSPGAEGAAAAPPSPAWSEPEPEAGLEPEREPGPAGSGEPGLRQRVR 152
Query: 90 R 90
R
Sbjct: 153 R 153
>gi|149158690 HLA-B associated transcript-2 [Homo sapiens]
Length = 2157
Score = 31.6 bits (70), Expect = 0.14
Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 5/41 (12%)
Query: 36 ATPGPPPAQPQGGGRLRAPPSPAPSSGLL--SQVWQPSAAP 74
+TP PPPA P+ L APP+P P+S ++ +P+ AP
Sbjct: 516 STPAPPPAVPK---ELPAPPAPPPASAPTPETEPEEPAQAP 553
Score = 29.6 bits (65), Expect = 0.54
Identities = 14/28 (50%), Positives = 14/28 (50%)
Query: 38 PGPPPAQPQGGGRLRAPPSPAPSSGLLS 65
PG P P L PP PAP S LLS
Sbjct: 1866 PGTPSLHPYRSQPLYLPPGPAPPSALLS 1893
>gi|51477700 mediator complex subunit 15 isoform a [Homo sapiens]
Length = 788
Score = 31.6 bits (70), Expect = 0.14
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 38 PGPPPAQP--QGGGRLRAPPSPAPSSGLLSQVWQPSAAP 74
P P P QP Q + + P+P+PSS L S QPS +P
Sbjct: 454 PSPQPGQPSSQPNSNVSSGPAPSPSSFLPSPSPQPSQSP 492
>gi|21312134 mediator complex subunit 15 isoform b [Homo sapiens]
Length = 748
Score = 31.6 bits (70), Expect = 0.14
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 38 PGPPPAQP--QGGGRLRAPPSPAPSSGLLSQVWQPSAAP 74
P P P QP Q + + P+P+PSS L S QPS +P
Sbjct: 414 PSPQPGQPSSQPNSNVSSGPAPSPSSFLPSPSPQPSQSP 452
>gi|239754327 PREDICTED: chromosome 6 open reading frame 132 [Homo
sapiens]
Length = 1188
Score = 30.8 bits (68), Expect = 0.24
Identities = 19/41 (46%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
Query: 38 PGPPP--AQPQGGGRLRAPPS--PAPSSGLLSQVWQPSAAP 74
PGPP ++P GG L +PPS P P LL PS AP
Sbjct: 148 PGPPQDISEPPGGSPLPSPPSTAPPPPPLLLEPPPPPSMAP 188
>gi|239748855 PREDICTED: chromosome 6 open reading frame 132 [Homo
sapiens]
Length = 1188
Score = 30.8 bits (68), Expect = 0.24
Identities = 19/41 (46%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
Query: 38 PGPPP--AQPQGGGRLRAPPS--PAPSSGLLSQVWQPSAAP 74
PGPP ++P GG L +PPS P P LL PS AP
Sbjct: 148 PGPPQDISEPPGGSPLPSPPSTAPPPPPLLLEPPPPPSMAP 188
>gi|239742884 PREDICTED: hypothetical protein LOC647024 [Homo
sapiens]
Length = 1188
Score = 30.8 bits (68), Expect = 0.24
Identities = 19/41 (46%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
Query: 38 PGPPP--AQPQGGGRLRAPPS--PAPSSGLLSQVWQPSAAP 74
PGPP ++P GG L +PPS P P LL PS AP
Sbjct: 148 PGPPQDISEPPGGSPLPSPPSTAPPPPPLLLEPPPPPSMAP 188
>gi|27436984 potassium voltage-gated channel, Shal-related
subfamily, member 3 isoform 1 [Homo sapiens]
Length = 655
Score = 30.8 bits (68), Expect = 0.24
Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 15/79 (18%)
Query: 1 MESLKFQSKEEIRNTSHRANVTKRNSANRKTD--------------AILATPGPPPAQPQ 46
+ S++ S I+ + + T R+S N K D AI++ P PP P+
Sbjct: 567 LRSMQELSTIHIQGSEQPSLTTSRSSLNLKADDGLRPNCKTSQITTAIISIPTPPALTPE 626
Query: 47 GGGRLRAPPSPAPSSGLLS 65
G R P SP P++ + S
Sbjct: 627 GESR-PPPASPGPNTNIPS 644
>gi|27436986 potassium voltage-gated channel, Shal-related
subfamily, member 3 isoform 2 [Homo sapiens]
Length = 636
Score = 30.8 bits (68), Expect = 0.24
Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 15/79 (18%)
Query: 1 MESLKFQSKEEIRNTSHRANVTKRNSANRKTD--------------AILATPGPPPAQPQ 46
+ S++ S I+ + + T R+S N K D AI++ P PP P+
Sbjct: 548 LRSMQELSTIHIQGSEQPSLTTSRSSLNLKADDGLRPNCKTSQITTAIISIPTPPALTPE 607
Query: 47 GGGRLRAPPSPAPSSGLLS 65
G R P SP P++ + S
Sbjct: 608 GESR-PPPASPGPNTNIPS 625
>gi|155030232 proline, glutamic acid and leucine rich protein 1 [Homo
sapiens]
Length = 1130
Score = 30.8 bits (68), Expect = 0.24
Identities = 17/50 (34%), Positives = 21/50 (42%)
Query: 38 PGPPPAQPQGGGRLRAPPSPAPSSGLLSQVWQPSAAPWYGPFSGPLLRKE 87
P PPA P + P P P GLL +V +P G + P L E
Sbjct: 980 PTLPPALPPPESPPKVQPEPEPEPGLLLEVEEPGTEEERGADTAPTLAPE 1029
>gi|122937496 WAS/WASL interacting protein family, member 3 [Homo
sapiens]
Length = 483
Score = 30.8 bits (68), Expect = 0.24
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 19/61 (31%)
Query: 33 AILATPGPPPAQP-----------QGGGRLRAPPSP---APSSGLLSQ-----VWQPSAA 73
A+ A P PP +QP GGG+L PP+P +P++ L S+ W P+
Sbjct: 344 ALPAPPAPPGSQPFLQKKRHGRPGAGGGKLNPPPAPPARSPTTELSSKSQQATAWTPTQQ 403
Query: 74 P 74
P
Sbjct: 404 P 404
Score = 26.9 bits (58), Expect = 3.5
Identities = 12/24 (50%), Positives = 13/24 (54%)
Query: 38 PGPPPAQPQGGGRLRAPPSPAPSS 61
P PPP P L APP P PS+
Sbjct: 5 PPPPPPLPPPPPPLGAPPPPPPSA 28
Score = 26.6 bits (57), Expect = 4.6
Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 9/58 (15%)
Query: 40 PPPAQPQGGGRLRAPPSPAPSSGLLSQVWQPSAAPWYGPFSGPLLRKEQKRNPRKGTG 97
PPP P+ +APP A + L AP P S P L+K++ P G G
Sbjct: 323 PPPLPPKSPS-FQAPPQKAGAQAL--------PAPPAPPGSQPFLQKKRHGRPGAGGG 371
Score = 25.8 bits (55), Expect = 7.8
Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 6/43 (13%)
Query: 36 ATPGPPPAQPQGGGRLRAPPSPAPSSGLLSQVWQPSAAPWYGP 78
A P PPP P PP P+S L + +P AP + P
Sbjct: 222 APPPPPPPPPP------TPPPLPPASVLSDKAVKPQLAPLHLP 258
>gi|208022661 hypothetical protein LOC57701 [Homo sapiens]
Length = 1334
Score = 30.8 bits (68), Expect = 0.24
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Query: 18 RANVTKRNSANRKTDAILATPGPPPAQPQGGGRLRAPPSPAPSSGLLSQVWQPSAAPW 75
+A + + A +TD +L P +P G G P SP P +G L QP +PW
Sbjct: 187 KAQILEVLRALEETDPLLLCSPATPWRPPGQG----PGSPEPINGELCGPPQPEPSPW 240
>gi|33356148 formin-like 1 [Homo sapiens]
Length = 1100
Score = 30.8 bits (68), Expect = 0.24
Identities = 22/69 (31%), Positives = 28/69 (40%), Gaps = 2/69 (2%)
Query: 26 SANRKTDAILATPGPPPAQPQGGGRLRAPPSPAPSSGLLSQVWQPSAAPWYGPFSGP--L 83
SA + + +P PPPA P G PP P P G V P P P P L
Sbjct: 560 SAPPQAPPLPGSPEPPPAPPLPGDLPPPPPPPPPPPGTDGPVPPPPPPPPPPPGGPPDAL 619
Query: 84 LRKEQKRNP 92
R++ + P
Sbjct: 620 GRRDSELGP 628
Score = 28.1 bits (61), Expect = 1.6
Identities = 21/49 (42%), Positives = 23/49 (46%), Gaps = 7/49 (14%)
Query: 37 TPGP---PPAQPQGGGRLRAPPSPAPSSGLLS-QVWQPSAAPWYGPFSG 81
+P P P A+P G APP P P GL S Q PSA P P G
Sbjct: 525 SPSPDLAPAAEPAPGA---APPPPPPLPGLPSPQEAPPSAPPQAPPLPG 570
Score = 28.1 bits (61), Expect = 1.6
Identities = 21/61 (34%), Positives = 23/61 (37%), Gaps = 3/61 (4%)
Query: 36 ATPGPPPAQPQGGGRLRAPPSPAPSSGLLSQVWQPSAAPWYGPFSGPLLRKEQKRNPRKG 95
A P PPP P APPS P + L +P AP P G L P G
Sbjct: 540 AAPPPPPPLPGLPSPQEAPPSAPPQAPPLPGSPEPPPAP---PLPGDLPPPPPPPPPPPG 596
Query: 96 T 96
T
Sbjct: 597 T 597
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.309 0.128 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,406,827
Number of Sequences: 37866
Number of extensions: 339291
Number of successful extensions: 3629
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 293
Number of HSP's that attempted gapping in prelim test: 2791
Number of HSP's gapped (non-prelim): 1044
length of query: 97
length of database: 18,247,518
effective HSP length: 68
effective length of query: 29
effective length of database: 15,672,630
effective search space: 454506270
effective search space used: 454506270
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.