Guide to the Human Genome
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Search of human proteins with 239752293

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239752293 PREDICTED: hypothetical protein [Homo sapiens]
         (97 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239757784 PREDICTED: hypothetical protein XP_002346335 [Homo ...   203   2e-53
gi|239752293 PREDICTED: hypothetical protein [Homo sapiens]           203   2e-53
gi|239746804 PREDICTED: hypothetical protein XP_002343853 [Homo ...   203   2e-53
gi|188536004 zinc finger protein 469 [Homo sapiens]                    37   0.004
gi|32307132 NFS1 nitrogen fixation 1 [Homo sapiens]                    37   0.004
gi|41281683 disabled homolog 2 interacting protein isoform 2 [Ho...    34   0.029
gi|94967023 disabled homolog 2 interacting protein isoform 1 [Ho...    34   0.029
gi|171543895 ataxin 2 [Homo sapiens]                                   34   0.029
gi|187761324 shootin1 isoform a [Homo sapiens]                         33   0.037
gi|50511340 shootin1 isoform b [Homo sapiens]                          33   0.037
gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens]     33   0.049
gi|239752594 PREDICTED: hypothetical protein, partial [Homo sapi...    33   0.064
gi|110832843 TBP-associated factor 4 [Homo sapiens]                    33   0.064
gi|22027541 programmed cell death 7 [Homo sapiens]                     33   0.064
gi|72004269 tetra-peptide repeat homeobox [Homo sapiens]               32   0.083
gi|89063265 PREDICTED: similar to MHC class I antigen [Homo sapi...    32   0.11 
gi|91208420 bassoon protein [Homo sapiens]                             32   0.11 
gi|37693995 Kruppel-like factor 13 [Homo sapiens]                      32   0.11 
gi|149158690 HLA-B associated transcript-2 [Homo sapiens]              32   0.14 
gi|51477700 mediator complex subunit 15 isoform a [Homo sapiens]       32   0.14 
gi|21312134 mediator complex subunit 15 isoform b [Homo sapiens]       32   0.14 
gi|239754327 PREDICTED: chromosome 6 open reading frame 132 [Hom...    31   0.24 
gi|239748855 PREDICTED: chromosome 6 open reading frame 132 [Hom...    31   0.24 
gi|239742884 PREDICTED: hypothetical protein LOC647024 [Homo sap...    31   0.24 
gi|27436984 potassium voltage-gated channel, Shal-related subfam...    31   0.24 
gi|27436986 potassium voltage-gated channel, Shal-related subfam...    31   0.24 
gi|155030232 proline, glutamic acid and leucine rich protein 1 [...    31   0.24 
gi|122937496 WAS/WASL interacting protein family, member 3 [Homo...    31   0.24 
gi|208022661 hypothetical protein LOC57701 [Homo sapiens]              31   0.24 
gi|33356148 formin-like 1 [Homo sapiens]                               31   0.24 

>gi|239757784 PREDICTED: hypothetical protein XP_002346335 [Homo
          sapiens]
          Length = 97

 Score =  203 bits (517), Expect = 2e-53
 Identities = 97/97 (100%), Positives = 97/97 (100%)

Query: 1  MESLKFQSKEEIRNTSHRANVTKRNSANRKTDAILATPGPPPAQPQGGGRLRAPPSPAPS 60
          MESLKFQSKEEIRNTSHRANVTKRNSANRKTDAILATPGPPPAQPQGGGRLRAPPSPAPS
Sbjct: 1  MESLKFQSKEEIRNTSHRANVTKRNSANRKTDAILATPGPPPAQPQGGGRLRAPPSPAPS 60

Query: 61 SGLLSQVWQPSAAPWYGPFSGPLLRKEQKRNPRKGTG 97
          SGLLSQVWQPSAAPWYGPFSGPLLRKEQKRNPRKGTG
Sbjct: 61 SGLLSQVWQPSAAPWYGPFSGPLLRKEQKRNPRKGTG 97


>gi|239752293 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 97

 Score =  203 bits (517), Expect = 2e-53
 Identities = 97/97 (100%), Positives = 97/97 (100%)

Query: 1  MESLKFQSKEEIRNTSHRANVTKRNSANRKTDAILATPGPPPAQPQGGGRLRAPPSPAPS 60
          MESLKFQSKEEIRNTSHRANVTKRNSANRKTDAILATPGPPPAQPQGGGRLRAPPSPAPS
Sbjct: 1  MESLKFQSKEEIRNTSHRANVTKRNSANRKTDAILATPGPPPAQPQGGGRLRAPPSPAPS 60

Query: 61 SGLLSQVWQPSAAPWYGPFSGPLLRKEQKRNPRKGTG 97
          SGLLSQVWQPSAAPWYGPFSGPLLRKEQKRNPRKGTG
Sbjct: 61 SGLLSQVWQPSAAPWYGPFSGPLLRKEQKRNPRKGTG 97


>gi|239746804 PREDICTED: hypothetical protein XP_002343853 [Homo
          sapiens]
          Length = 97

 Score =  203 bits (517), Expect = 2e-53
 Identities = 97/97 (100%), Positives = 97/97 (100%)

Query: 1  MESLKFQSKEEIRNTSHRANVTKRNSANRKTDAILATPGPPPAQPQGGGRLRAPPSPAPS 60
          MESLKFQSKEEIRNTSHRANVTKRNSANRKTDAILATPGPPPAQPQGGGRLRAPPSPAPS
Sbjct: 1  MESLKFQSKEEIRNTSHRANVTKRNSANRKTDAILATPGPPPAQPQGGGRLRAPPSPAPS 60

Query: 61 SGLLSQVWQPSAAPWYGPFSGPLLRKEQKRNPRKGTG 97
          SGLLSQVWQPSAAPWYGPFSGPLLRKEQKRNPRKGTG
Sbjct: 61 SGLLSQVWQPSAAPWYGPFSGPLLRKEQKRNPRKGTG 97


>gi|188536004 zinc finger protein 469 [Homo sapiens]
          Length = 3925

 Score = 36.6 bits (83), Expect = 0.004
 Identities = 25/68 (36%), Positives = 32/68 (47%), Gaps = 16/68 (23%)

Query: 32  DAILATPGPPPAQPQG---GGRLRA--------PP-----SPAPSSGLLSQVWQPSAAPW 75
           D + +T GPP + PQ    G   RA        PP     +P P    L Q+W P+AAP+
Sbjct: 389 DGLGSTRGPPSSLPQRHFPGQAYRASGVDTSPGPPDTELAAPGPPPARLPQLWDPTAAPY 448

Query: 76  YGPFSGPL 83
             P  GPL
Sbjct: 449 PTPPGGPL 456


>gi|32307132 NFS1 nitrogen fixation 1 [Homo sapiens]
          Length = 457

 Score = 36.6 bits (83), Expect = 0.004
 Identities = 27/73 (36%), Positives = 31/73 (42%), Gaps = 12/73 (16%)

Query: 24 RNSANRKTDAILATPGPPPAQPQGGGRL----RAPPSPAPSSGLLSQVWQPSAAPWYGPF 79
          R +  R   A+ A PGP PA P  G RL    RAP S  P+          +AAP  GP 
Sbjct: 4  RAAWRRAAVAVTAAPGPKPAAPTRGLRLRVGDRAPQSAVPA--------DTAAAPEVGPV 55

Query: 80 SGPLLRKEQKRNP 92
            PL    Q   P
Sbjct: 56 LRPLYMDVQATTP 68


>gi|41281683 disabled homolog 2 interacting protein isoform 2 [Homo
           sapiens]
          Length = 1065

 Score = 33.9 bits (76), Expect = 0.029
 Identities = 31/85 (36%), Positives = 40/85 (47%), Gaps = 23/85 (27%)

Query: 21  VTKRNSAN--RKTDAILATPGPPPAQPQGGGRLRAPPS-------PAPSSGLLSQVWQPS 71
           V ++NSA   R+ D     P PPP  P    R R PP+       P PSSG L+     S
Sbjct: 781 VPRQNSAGPQRRIDQ----PPPPPPPPPPAPRGRTPPNLLSTLQYPRPSSGTLA-----S 831

Query: 72  AAP-WYGPFSGPLLRKEQKRNPRKG 95
           A+P W GP +    R  Q+ +  KG
Sbjct: 832 ASPDWVGPST----RLRQQSSSSKG 852


>gi|94967023 disabled homolog 2 interacting protein isoform 1 [Homo
           sapiens]
          Length = 1132

 Score = 33.9 bits (76), Expect = 0.029
 Identities = 31/85 (36%), Positives = 40/85 (47%), Gaps = 23/85 (27%)

Query: 21  VTKRNSAN--RKTDAILATPGPPPAQPQGGGRLRAPPS-------PAPSSGLLSQVWQPS 71
           V ++NSA   R+ D     P PPP  P    R R PP+       P PSSG L+     S
Sbjct: 877 VPRQNSAGPQRRIDQ----PPPPPPPPPPAPRGRTPPNLLSTLQYPRPSSGTLA-----S 927

Query: 72  AAP-WYGPFSGPLLRKEQKRNPRKG 95
           A+P W GP +    R  Q+ +  KG
Sbjct: 928 ASPDWVGPST----RLRQQSSSSKG 948


>gi|171543895 ataxin 2 [Homo sapiens]
          Length = 1313

 Score = 33.9 bits (76), Expect = 0.029
 Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 4/64 (6%)

Query: 35  LATPGPPPAQPQGGGRLRAPPSPAPSSGLLSQ----VWQPSAAPWYGPFSGPLLRKEQKR 90
           LA+PG PPA P     L A  SP  S   L++      +P+  P YGP +  L  ++Q++
Sbjct: 111 LASPGAPPAAPTRASPLGARASPPRSGVSLARPAPGCPRPACEPVYGPLTMSLKPQQQQQ 170

Query: 91  NPRK 94
             ++
Sbjct: 171 QQQQ 174


>gi|187761324 shootin1 isoform a [Homo sapiens]
          Length = 631

 Score = 33.5 bits (75), Expect = 0.037
 Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 16/90 (17%)

Query: 4   LKFQSKEE-IRNTSHRANVTKRNSANRKTDAILATPGPPPAQPQGGGRLRAPPSPAPSSG 62
           LK+Q+ EE  RN  H  +  ++   N+  +++   P PPP  P        PP P P   
Sbjct: 322 LKYQNSEEKARNLKHSVDELQKR-VNQSENSVPPPPPPPPPLP--------PPPPNPIRS 372

Query: 63  LLSQVWQPSAAPWYGPFSGPLLRKEQKRNP 92
           L+S + + S        SG   +KE+   P
Sbjct: 373 LMSMIRKRSHP------SGSGAKKEKATQP 396


>gi|50511340 shootin1 isoform b [Homo sapiens]
          Length = 456

 Score = 33.5 bits (75), Expect = 0.037
 Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 16/90 (17%)

Query: 4   LKFQSKEE-IRNTSHRANVTKRNSANRKTDAILATPGPPPAQPQGGGRLRAPPSPAPSSG 62
           LK+Q+ EE  RN  H  +  ++   N+  +++   P PPP  P        PP P P   
Sbjct: 322 LKYQNSEEKARNLKHSVDELQKR-VNQSENSVPPPPPPPPPLP--------PPPPNPIRS 372

Query: 63  LLSQVWQPSAAPWYGPFSGPLLRKEQKRNP 92
           L+S + + S        SG   +KE+   P
Sbjct: 373 LMSMIRKRSHP------SGSGAKKEKATQP 396


>gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens]
          Length = 538

 Score = 33.1 bits (74), Expect = 0.049
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 4/59 (6%)

Query: 5   KFQSKEEIRNTSHRANVTKRNSANRKTDAILATPGPPPAQPQGGGRLRA----PPSPAP 59
           K   +  +   S++ +++ RN+A  +     ATP  PP  P+G     A    PP+PAP
Sbjct: 75  KLIQQRAVLRVSYKGSISYRNAARVQPPRRGATPPAPPRAPRGAPAAAAAAAPPPTPAP 133



 Score = 29.6 bits (65), Expect = 0.54
 Identities = 20/53 (37%), Positives = 24/53 (45%), Gaps = 10/53 (18%)

Query: 33  AILATPGPPPAQPQGGGRLRAP---PSPAPSSGLLSQVWQPSAAPWYGPFSGP 82
           A  A P P PAQP    +  AP   P PAP++        P+ AP  GP   P
Sbjct: 155 AATAPPSPGPAQPGPRAQRAAPLAAPPPAPAA-------PPAVAPPAGPRRAP 200



 Score = 25.8 bits (55), Expect = 7.8
 Identities = 10/22 (45%), Positives = 12/22 (54%)

Query: 38  PGPPPAQPQGGGRLRAPPSPAP 59
           P PPP QP    + + PP P P
Sbjct: 210 PLPPPPQPPAPPQQQQPPPPQP 231


>gi|239752594 PREDICTED: hypothetical protein, partial [Homo
           sapiens]
          Length = 673

 Score = 32.7 bits (73), Expect = 0.064
 Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 3/62 (4%)

Query: 8   SKEEIRNTSHRANVT--KRNSANRKTDAILATPGPPPAQPQGGGRLRAPPSPAPSSGLLS 65
           S+  +  T  RA++T   R S  R    +L T  PP A P G    R  P+  PSS LL+
Sbjct: 552 SRASLTRTPSRASLTTPSRASLTRTPSTVLLTRMPPSASPTGMPS-RTSPTGMPSSALLT 610

Query: 66  QV 67
           ++
Sbjct: 611 KM 612


>gi|110832843 TBP-associated factor 4 [Homo sapiens]
          Length = 1085

 Score = 32.7 bits (73), Expect = 0.064
 Identities = 13/23 (56%), Positives = 16/23 (69%)

Query: 40  PPPAQPQGGGRLRAPPSPAPSSG 62
           PPPA  Q GG   A P+PAP++G
Sbjct: 298 PPPAAAQNGGSAGAAPAPAPAAG 320



 Score = 27.3 bits (59), Expect = 2.7
 Identities = 18/52 (34%), Positives = 22/52 (42%), Gaps = 9/52 (17%)

Query: 36  ATPGP----PPAQPQGGGRLRAPPSPAPSSGLLSQ-----VWQPSAAPWYGP 78
           A P P    PPA P       APP P P+   L++        P+AAP   P
Sbjct: 248 APPAPAAPSPPAAPAPAAPAAAPPPPPPAPATLARPPGHPAGPPTAAPAVPP 299



 Score = 26.2 bits (56), Expect = 6.0
 Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 4/49 (8%)

Query: 36  ATPGPPPA---QPQGGGRLRAPPSPAPSSGLLSQVWQPSAAPWYGPFSG 81
           A P PPPA   +P GGG  + P  P+P   L+     P AA    P  G
Sbjct: 85  AAPEPPPAGRARPGGGGP-QRPGPPSPRRPLVPAGPAPPAAKLRPPPEG 132



 Score = 25.8 bits (55), Expect = 7.8
 Identities = 20/55 (36%), Positives = 23/55 (41%), Gaps = 12/55 (21%)

Query: 33  AILATPGPPPA---QPQGGGRL--RAPPSPAPSSGLLSQVWQPSAAPWYGPFSGP 82
           A+ A P P PA   +P G   L  RA P P P  G       P   P  G  +GP
Sbjct: 145 AVAAGPEPAPAGPAKPAGPAALAARAGPGPGPGPG-------PGPGPGPGKPAGP 192


>gi|22027541 programmed cell death 7 [Homo sapiens]
          Length = 485

 Score = 32.7 bits (73), Expect = 0.064
 Identities = 21/59 (35%), Positives = 23/59 (38%), Gaps = 8/59 (13%)

Query: 38 PGPPPAQPQGGGRLRAPPSPAPSSGLLSQVWQPSAAPWYGPFSG---PLLRKEQKRNPR 93
          PGPPP QP        PP P P     S  + P      GPF G   P L+      PR
Sbjct: 12 PGPPPPQPPPPAPFGCPPPPLP-----SPAFPPPLPQRPGPFPGASAPFLQPPLALQPR 65


>gi|72004269 tetra-peptide repeat homeobox [Homo sapiens]
          Length = 411

 Score = 32.3 bits (72), Expect = 0.083
 Identities = 23/68 (33%), Positives = 29/68 (42%), Gaps = 8/68 (11%)

Query: 33  AILATPGPPPAQPQGGGRLRAP-----PSPAPSSGLLSQVWQPSAAPWYGPFSGPLLRKE 87
           A+   PGP PA   G  ++  P     P P P     +Q+  P  AP  GP SGP+    
Sbjct: 91  ALSPGPGPIPAPIPGPAQIPGPLPGSIPGPIPGP---AQIPSPIPAPIPGPISGPVQIPG 147

Query: 88  QKRNPRKG 95
             R P  G
Sbjct: 148 PFRGPIPG 155



 Score = 32.3 bits (72), Expect = 0.083
 Identities = 19/45 (42%), Positives = 21/45 (46%)

Query: 38  PGPPPAQPQGGGRLRAPPSPAPSSGLLSQVWQPSAAPWYGPFSGP 82
           P P PAQ  G GRL+ P        + S    P  AP  GP SGP
Sbjct: 268 PIPSPAQIPGPGRLQGPGPILSPGRMRSPGSLPGLAPILGPGSGP 312



 Score = 26.2 bits (56), Expect = 6.0
 Identities = 20/60 (33%), Positives = 23/60 (38%), Gaps = 14/60 (23%)

Query: 38  PGPPPAQPQGGGRLRAP---------PSPAPSSGLLS-----QVWQPSAAPWYGPFSGPL 83
           PGP     Q  G  R P         P P P SG  S      +  P+  P  GP SGP+
Sbjct: 136 PGPISGPVQIPGPFRGPIPGPISGPAPIPGPISGPFSGPNPGPIPGPNPGPIPGPISGPI 195


>gi|89063265 PREDICTED: similar to MHC class I antigen [Homo
          sapiens]
          Length = 366

 Score = 32.0 bits (71), Expect = 0.11
 Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 2/49 (4%)

Query: 29 RKTDAILATPGPPPAQPQGGGRLRAPPSPAPSSGLLSQVWQPSAAPWYG 77
          R    I + PGP PA    GGR R+ PSP P S  L   +   + P  G
Sbjct: 9  RPPGPITSDPGPDPAPR--GGRARSHPSPPPGSHSLRYFYTAVSRPGLG 55


>gi|91208420 bassoon protein [Homo sapiens]
          Length = 3926

 Score = 32.0 bits (71), Expect = 0.11
 Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 2/54 (3%)

Query: 39 GPPPAQPQGGGRLRAPPSPAPSSGLLSQVWQPSAAPWYGPFSGPLLRKEQKRNP 92
          G PP+ P GGG+L  P + A  S  +  V  P   P  GP  G   R+   + P
Sbjct: 34 GKPPSAPAGGGQL--PAAGAARSTAVPPVPGPGPGPGPGPGPGSTSRRLDPKEP 85


>gi|37693995 Kruppel-like factor 13 [Homo sapiens]
          Length = 288

 Score = 32.0 bits (71), Expect = 0.11
 Identities = 20/61 (32%), Positives = 24/61 (39%)

Query: 30  KTDAILATPGPPPAQPQGGGRLRAPPSPAPSSGLLSQVWQPSAAPWYGPFSGPLLRKEQK 89
           +T   L  P P P  P   G   APPSPA S        +P   P       P LR+  +
Sbjct: 93  RTPCRLPPPAPEPTSPGAEGAAAAPPSPAWSEPEPEAGLEPEREPGPAGSGEPGLRQRVR 152

Query: 90  R 90
           R
Sbjct: 153 R 153


>gi|149158690 HLA-B associated transcript-2 [Homo sapiens]
          Length = 2157

 Score = 31.6 bits (70), Expect = 0.14
 Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 5/41 (12%)

Query: 36  ATPGPPPAQPQGGGRLRAPPSPAPSSGLL--SQVWQPSAAP 74
           +TP PPPA P+    L APP+P P+S     ++  +P+ AP
Sbjct: 516 STPAPPPAVPK---ELPAPPAPPPASAPTPETEPEEPAQAP 553



 Score = 29.6 bits (65), Expect = 0.54
 Identities = 14/28 (50%), Positives = 14/28 (50%)

Query: 38   PGPPPAQPQGGGRLRAPPSPAPSSGLLS 65
            PG P   P     L  PP PAP S LLS
Sbjct: 1866 PGTPSLHPYRSQPLYLPPGPAPPSALLS 1893


>gi|51477700 mediator complex subunit 15 isoform a [Homo sapiens]
          Length = 788

 Score = 31.6 bits (70), Expect = 0.14
 Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 2/39 (5%)

Query: 38  PGPPPAQP--QGGGRLRAPPSPAPSSGLLSQVWQPSAAP 74
           P P P QP  Q    + + P+P+PSS L S   QPS +P
Sbjct: 454 PSPQPGQPSSQPNSNVSSGPAPSPSSFLPSPSPQPSQSP 492


>gi|21312134 mediator complex subunit 15 isoform b [Homo sapiens]
          Length = 748

 Score = 31.6 bits (70), Expect = 0.14
 Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 2/39 (5%)

Query: 38  PGPPPAQP--QGGGRLRAPPSPAPSSGLLSQVWQPSAAP 74
           P P P QP  Q    + + P+P+PSS L S   QPS +P
Sbjct: 414 PSPQPGQPSSQPNSNVSSGPAPSPSSFLPSPSPQPSQSP 452


>gi|239754327 PREDICTED: chromosome 6 open reading frame 132 [Homo
           sapiens]
          Length = 1188

 Score = 30.8 bits (68), Expect = 0.24
 Identities = 19/41 (46%), Positives = 22/41 (53%), Gaps = 4/41 (9%)

Query: 38  PGPPP--AQPQGGGRLRAPPS--PAPSSGLLSQVWQPSAAP 74
           PGPP   ++P GG  L +PPS  P P   LL     PS AP
Sbjct: 148 PGPPQDISEPPGGSPLPSPPSTAPPPPPLLLEPPPPPSMAP 188


>gi|239748855 PREDICTED: chromosome 6 open reading frame 132 [Homo
           sapiens]
          Length = 1188

 Score = 30.8 bits (68), Expect = 0.24
 Identities = 19/41 (46%), Positives = 22/41 (53%), Gaps = 4/41 (9%)

Query: 38  PGPPP--AQPQGGGRLRAPPS--PAPSSGLLSQVWQPSAAP 74
           PGPP   ++P GG  L +PPS  P P   LL     PS AP
Sbjct: 148 PGPPQDISEPPGGSPLPSPPSTAPPPPPLLLEPPPPPSMAP 188


>gi|239742884 PREDICTED: hypothetical protein LOC647024 [Homo
           sapiens]
          Length = 1188

 Score = 30.8 bits (68), Expect = 0.24
 Identities = 19/41 (46%), Positives = 22/41 (53%), Gaps = 4/41 (9%)

Query: 38  PGPPP--AQPQGGGRLRAPPS--PAPSSGLLSQVWQPSAAP 74
           PGPP   ++P GG  L +PPS  P P   LL     PS AP
Sbjct: 148 PGPPQDISEPPGGSPLPSPPSTAPPPPPLLLEPPPPPSMAP 188


>gi|27436984 potassium voltage-gated channel, Shal-related
           subfamily, member 3 isoform 1 [Homo sapiens]
          Length = 655

 Score = 30.8 bits (68), Expect = 0.24
 Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 15/79 (18%)

Query: 1   MESLKFQSKEEIRNTSHRANVTKRNSANRKTD--------------AILATPGPPPAQPQ 46
           + S++  S   I+ +   +  T R+S N K D              AI++ P PP   P+
Sbjct: 567 LRSMQELSTIHIQGSEQPSLTTSRSSLNLKADDGLRPNCKTSQITTAIISIPTPPALTPE 626

Query: 47  GGGRLRAPPSPAPSSGLLS 65
           G  R   P SP P++ + S
Sbjct: 627 GESR-PPPASPGPNTNIPS 644


>gi|27436986 potassium voltage-gated channel, Shal-related
           subfamily, member 3 isoform 2 [Homo sapiens]
          Length = 636

 Score = 30.8 bits (68), Expect = 0.24
 Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 15/79 (18%)

Query: 1   MESLKFQSKEEIRNTSHRANVTKRNSANRKTD--------------AILATPGPPPAQPQ 46
           + S++  S   I+ +   +  T R+S N K D              AI++ P PP   P+
Sbjct: 548 LRSMQELSTIHIQGSEQPSLTTSRSSLNLKADDGLRPNCKTSQITTAIISIPTPPALTPE 607

Query: 47  GGGRLRAPPSPAPSSGLLS 65
           G  R   P SP P++ + S
Sbjct: 608 GESR-PPPASPGPNTNIPS 625


>gi|155030232 proline, glutamic acid and leucine rich protein 1 [Homo
            sapiens]
          Length = 1130

 Score = 30.8 bits (68), Expect = 0.24
 Identities = 17/50 (34%), Positives = 21/50 (42%)

Query: 38   PGPPPAQPQGGGRLRAPPSPAPSSGLLSQVWQPSAAPWYGPFSGPLLRKE 87
            P  PPA P      +  P P P  GLL +V +P      G  + P L  E
Sbjct: 980  PTLPPALPPPESPPKVQPEPEPEPGLLLEVEEPGTEEERGADTAPTLAPE 1029


>gi|122937496 WAS/WASL interacting protein family, member 3 [Homo
           sapiens]
          Length = 483

 Score = 30.8 bits (68), Expect = 0.24
 Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 19/61 (31%)

Query: 33  AILATPGPPPAQP-----------QGGGRLRAPPSP---APSSGLLSQ-----VWQPSAA 73
           A+ A P PP +QP            GGG+L  PP+P   +P++ L S+      W P+  
Sbjct: 344 ALPAPPAPPGSQPFLQKKRHGRPGAGGGKLNPPPAPPARSPTTELSSKSQQATAWTPTQQ 403

Query: 74  P 74
           P
Sbjct: 404 P 404



 Score = 26.9 bits (58), Expect = 3.5
 Identities = 12/24 (50%), Positives = 13/24 (54%)

Query: 38 PGPPPAQPQGGGRLRAPPSPAPSS 61
          P PPP  P     L APP P PS+
Sbjct: 5  PPPPPPLPPPPPPLGAPPPPPPSA 28



 Score = 26.6 bits (57), Expect = 4.6
 Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 9/58 (15%)

Query: 40  PPPAQPQGGGRLRAPPSPAPSSGLLSQVWQPSAAPWYGPFSGPLLRKEQKRNPRKGTG 97
           PPP  P+     +APP  A +  L         AP   P S P L+K++   P  G G
Sbjct: 323 PPPLPPKSPS-FQAPPQKAGAQAL--------PAPPAPPGSQPFLQKKRHGRPGAGGG 371



 Score = 25.8 bits (55), Expect = 7.8
 Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 6/43 (13%)

Query: 36  ATPGPPPAQPQGGGRLRAPPSPAPSSGLLSQVWQPSAAPWYGP 78
           A P PPP  P        PP   P+S L  +  +P  AP + P
Sbjct: 222 APPPPPPPPPP------TPPPLPPASVLSDKAVKPQLAPLHLP 258


>gi|208022661 hypothetical protein LOC57701 [Homo sapiens]
          Length = 1334

 Score = 30.8 bits (68), Expect = 0.24
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 4/58 (6%)

Query: 18  RANVTKRNSANRKTDAILATPGPPPAQPQGGGRLRAPPSPAPSSGLLSQVWQPSAAPW 75
           +A + +   A  +TD +L      P +P G G    P SP P +G L    QP  +PW
Sbjct: 187 KAQILEVLRALEETDPLLLCSPATPWRPPGQG----PGSPEPINGELCGPPQPEPSPW 240


>gi|33356148 formin-like 1 [Homo sapiens]
          Length = 1100

 Score = 30.8 bits (68), Expect = 0.24
 Identities = 22/69 (31%), Positives = 28/69 (40%), Gaps = 2/69 (2%)

Query: 26  SANRKTDAILATPGPPPAQPQGGGRLRAPPSPAPSSGLLSQVWQPSAAPWYGPFSGP--L 83
           SA  +   +  +P PPPA P  G     PP P P  G    V  P   P   P   P  L
Sbjct: 560 SAPPQAPPLPGSPEPPPAPPLPGDLPPPPPPPPPPPGTDGPVPPPPPPPPPPPGGPPDAL 619

Query: 84  LRKEQKRNP 92
            R++ +  P
Sbjct: 620 GRRDSELGP 628



 Score = 28.1 bits (61), Expect = 1.6
 Identities = 21/49 (42%), Positives = 23/49 (46%), Gaps = 7/49 (14%)

Query: 37  TPGP---PPAQPQGGGRLRAPPSPAPSSGLLS-QVWQPSAAPWYGPFSG 81
           +P P   P A+P  G    APP P P  GL S Q   PSA P   P  G
Sbjct: 525 SPSPDLAPAAEPAPGA---APPPPPPLPGLPSPQEAPPSAPPQAPPLPG 570



 Score = 28.1 bits (61), Expect = 1.6
 Identities = 21/61 (34%), Positives = 23/61 (37%), Gaps = 3/61 (4%)

Query: 36  ATPGPPPAQPQGGGRLRAPPSPAPSSGLLSQVWQPSAAPWYGPFSGPLLRKEQKRNPRKG 95
           A P PPP  P       APPS  P +  L    +P  AP   P  G L        P  G
Sbjct: 540 AAPPPPPPLPGLPSPQEAPPSAPPQAPPLPGSPEPPPAP---PLPGDLPPPPPPPPPPPG 596

Query: 96  T 96
           T
Sbjct: 597 T 597


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.309    0.128    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,406,827
Number of Sequences: 37866
Number of extensions: 339291
Number of successful extensions: 3629
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 293
Number of HSP's that attempted gapping in prelim test: 2791
Number of HSP's gapped (non-prelim): 1044
length of query: 97
length of database: 18,247,518
effective HSP length: 68
effective length of query: 29
effective length of database: 15,672,630
effective search space: 454506270
effective search space used: 454506270
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 55 (25.8 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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