Guide to the Human Genome
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Name: LOC100289469 Sequence: fasta or formatted (97aa) NCBI GI: 239752293
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {97aa} PREDICTED: hypothetical protein XP_002343853
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.3          9           2
 C cysteine            0.0          0           0
 D aspartate           1.0          1           1
 E glutamate           4.1          4           2
 F phenylalanine       2.1          2           1
 G glycine             9.3          9           3
 H histidine           1.0          1           1
 I isoleucine          2.1          2           1
 K lysine              7.2          7           1
 L leucine             7.2          7           2
 M methionine          1.0          1           1
 N asparagine          5.2          5           1
 P proline            14.4         14           3
 Q glutamine           6.2          6           1
 R arginine            9.3          9           1
 S serine             10.3         10           2
 T threonine           5.2          5           1
 V valine              2.1          2           1
 W tryptophan          2.1          2           1
 Y tyrosine            1.0          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100291637          1.000   PREDICTED: hypothetical protein XP_002346335 
LOC100289469          1.000   PREDICTED: hypothetical protein XP_002343853 
ZNF469                0.067   zinc finger protein 469 
NFS1                  0.067   NFS1 nitrogen fixation 1 
DAB2IP                0.051   disabled homolog 2 interacting protein isoform 2 [Ho...
DAB2IP                0.051   disabled homolog 2 interacting protein isoform 1 [Ho...
ATXN2                 0.051   ataxin 2 
KIAA1598              0.045   shootin1 isoform a 
KIAA1598              0.045   shootin1 isoform b 
SAMD1                 0.045   sterile alpha motif domain containing 1 
LOC100133756          0.045   PREDICTED: hypothetical protein, partial 
TAF4                  0.045   TBP-associated factor 4 
PDCD7                 0.045   programmed cell death 7 
TPRX1                 0.039   tetra-peptide repeat homeobox 
LOC652614             0.039   PREDICTED: similar to MHC class I antigen 
BSN                   0.039   bassoon protein 
KLF13                 0.039   Kruppel-like factor 13 
BAT2                  0.039   HLA-B associated transcript-2 
MED15                 0.039   mediator complex subunit 15 isoform a 
MED15                 0.039   mediator complex subunit 15 isoform b 
C6orf132              0.034   PREDICTED: chromosome 6 open reading frame 132 [Hom...
C6orf132              0.034   PREDICTED: chromosome 6 open reading frame 132 [Hom...
C6orf132              0.034   PREDICTED: hypothetical protein LOC647024 
KCND3                 0.034   potassium voltage-gated channel, Shal-related subfam...
KCND3                 0.034   potassium voltage-gated channel, Shal-related subfam...
PELP1                 0.034   proline, glutamic acid and leucine rich protein 1 [...
WIPF3                 0.034   WAS/WASL interacting protein family, member 3 [Homo...
KIAA1602              0.034   hypothetical protein LOC57701 
FMNL1                 0.034   formin-like 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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