Guide to the Human Genome
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Name: KIAA1598 Sequence: fasta or formatted (631aa) NCBI GI: 187761324
Description:

shootin1 isoform a

Referenced in:

Neurons

Other entries for this name:
alt prot [456aa] shootin1 isoform b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.4         28           2
 C cysteine            1.4          9           1
 D aspartate           4.4         28           2
 E glutamate          14.7         93           3
 F phenylalanine       1.0          6           1
 G glycine             2.7         17           1
 H histidine           1.7         11           1
 I isoleucine          4.6         29           1
 K lysine             11.1         70           2
 L leucine             9.5         60           3
 M methionine          2.1         13           2
 N asparagine          4.6         29           1
 P proline             6.0         38           9
 Q glutamine           6.5         41           2
 R arginine            4.4         28           3
 S serine              8.4         53           3
 T threonine           5.5         35           2
 V valine              6.0         38           3
 W tryptophan          0.0          0           0
 Y tyrosine            0.8          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   shootin1 isoform a 
KIAA1598              0.710   shootin1 isoform b 
MYH9                  0.048   myosin, heavy polypeptide 9, non-muscle 
AKAP9                 0.046   A-kinase anchor protein 9 isoform 3 
AKAP9                 0.044   A-kinase anchor protein 9 isoform 2 
CCDC88A               0.044   coiled-coil domain containing 88A isoform 2 
CCDC88A               0.044   coiled-coil domain containing 88A isoform 1 
MYH6                  0.043   myosin heavy chain 6 
GOLGB1                0.043   golgi autoantigen, golgin subfamily b, macrogolgin ...
CENPE                 0.041   centromere protein E 
MYH10                 0.041   myosin, heavy polypeptide 10, non-muscle 
MYH11                 0.041   smooth muscle myosin heavy chain 11 isoform SM1A [Ho...
MYH11                 0.041   smooth muscle myosin heavy chain 11 isoform SM1B [Ho...
MYH11                 0.041   smooth muscle myosin heavy chain 11 isoform SM2B [Ho...
MYH11                 0.041   smooth muscle myosin heavy chain 11 isoform SM2A [Ho...
MYH2                  0.041   myosin, heavy chain 2, skeletal muscle, adult [Homo...
MYH2                  0.041   myosin, heavy chain 2, skeletal muscle, adult [Homo...
MYH7                  0.040   myosin, heavy chain 7, cardiac muscle, beta 
MYH1                  0.040   myosin, heavy chain 1, skeletal muscle, adult [Homo...
EEA1                  0.039   early endosome antigen 1, 162kD 
MYH8                  0.039   myosin, heavy chain 8, skeletal muscle, perinatal [...
GCC2                  0.039   GRIP and coiled-coil domain-containing 2 
MYH4                  0.039   myosin, heavy polypeptide 4, skeletal muscle 
MYH3                  0.039   myosin, heavy chain 3, skeletal muscle, embryonic [H...
MYH15                 0.038   myosin, heavy polypeptide 15 
CALD1                 0.038   caldesmon 1 isoform 1 
ITSN1                 0.037   intersectin 1 isoform ITSN-s 
ITSN1                 0.037   intersectin 1 isoform ITSN-l 
CCDC62                0.037   coiled-coil domain containing 62 isoform b 
CCDC62                0.037   coiled-coil domain containing 62 isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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