Guide to the Human Genome
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Name: KIAA1598 Sequence: fasta or formatted (456aa) NCBI GI: 50511340
Description:

shootin1 isoform b

Referenced in:

Neurons

Other entries for this name:
alt prot [631aa] shootin1 isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.8         22           2
 C cysteine            1.3          6           1
 D aspartate           4.2         19           2
 E glutamate          15.6         71           3
 F phenylalanine       0.9          4           1
 G glycine             1.8          8           1
 H histidine           2.0          9           1
 I isoleucine          5.0         23           1
 K lysine             11.8         54           2
 L leucine            10.7         49           3
 M methionine          2.6         12           2
 N asparagine          4.8         22           1
 P proline             4.8         22           9
 Q glutamine           7.9         36           2
 R arginine            4.4         20           1
 S serine              6.4         29           2
 T threonine           4.2         19           2
 V valine              5.9         27           1
 W tryptophan          0.0          0           0
 Y tyrosine            0.9          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   shootin1 isoform b 
KIAA1598              0.994   shootin1 isoform a 
MYH9                  0.067   myosin, heavy polypeptide 9, non-muscle 
AKAP9                 0.064   A-kinase anchor protein 9 isoform 3 
AKAP9                 0.062   A-kinase anchor protein 9 isoform 2 
CCDC88A               0.062   coiled-coil domain containing 88A isoform 2 
CCDC88A               0.062   coiled-coil domain containing 88A isoform 1 
MYH10                 0.059   myosin, heavy polypeptide 10, non-muscle 
GOLGB1                0.059   golgi autoantigen, golgin subfamily b, macrogolgin ...
CENPE                 0.058   centromere protein E 
MYH13                 0.057   myosin, heavy polypeptide 13, skeletal muscle [Homo...
MYH2                  0.057   myosin, heavy chain 2, skeletal muscle, adult [Homo...
MYH2                  0.057   myosin, heavy chain 2, skeletal muscle, adult [Homo...
MYH11                 0.057   smooth muscle myosin heavy chain 11 isoform SM1A [Ho...
MYH11                 0.057   smooth muscle myosin heavy chain 11 isoform SM1B [Ho...
MYH11                 0.057   smooth muscle myosin heavy chain 11 isoform SM2B [Ho...
MYH11                 0.057   smooth muscle myosin heavy chain 11 isoform SM2A [Ho...
MYH1                  0.056   myosin, heavy chain 1, skeletal muscle, adult [Homo...
EEA1                  0.055   early endosome antigen 1, 162kD 
MYH8                  0.055   myosin, heavy chain 8, skeletal muscle, perinatal [...
MYH4                  0.055   myosin, heavy polypeptide 4, skeletal muscle 
ERC1                  0.053   RAB6-interacting protein 2 isoform epsilon 
ERC1                  0.053   RAB6-interacting protein 2 isoform delta 
ITSN1                 0.052   intersectin 1 isoform ITSN-s 
ITSN1                 0.052   intersectin 1 isoform ITSN-l 
CCDC62                0.052   coiled-coil domain containing 62 isoform b 
CCDC62                0.052   coiled-coil domain containing 62 isoform a 
GCC2                  0.051   GRIP and coiled-coil domain-containing 2 
CEP110                0.051   centrosomal protein 110kDa 
LOC645202             0.051   PREDICTED: hypothetical protein LOC645202 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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