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Search of human proteins with 118200352
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|118200352 hypothetical protein LOC642273 [Homo sapiens]
(321 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|118200352 hypothetical protein LOC642273 [Homo sapiens] 643 0.0
gi|46391104 hypothetical protein LOC83541 [Homo sapiens] 119 5e-27
gi|108389127 hypothetical protein LOC83541 [Homo sapiens] 119 5e-27
gi|13937401 hypothetical protein LOC83541 [Homo sapiens] 119 5e-27
gi|117956393 glycine/arginine rich protein 1 [Homo sapiens] 112 6e-25
gi|22218339 hypothetical protein LOC90362 [Homo sapiens] 111 8e-25
gi|110832843 TBP-associated factor 4 [Homo sapiens] 51 2e-06
gi|150170670 piccolo isoform 2 [Homo sapiens] 50 4e-06
gi|150378539 piccolo isoform 1 [Homo sapiens] 50 4e-06
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 49 6e-06
gi|239749695 PREDICTED: hypothetical protein XP_002347121 [Homo ... 47 2e-05
gi|239743961 PREDICTED: hypothetical protein XP_002344246 [Homo ... 47 2e-05
gi|110556644 zinc finger protein, multitype 1 [Homo sapiens] 47 2e-05
gi|40353727 synaptopodin isoform A [Homo sapiens] 46 5e-05
gi|95147559 ankyrin repeat domain 43 [Homo sapiens] 45 9e-05
gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo sapi... 45 1e-04
gi|239749594 PREDICTED: hypothetical protein XP_002347096 [Homo ... 44 3e-04
gi|116256464 hypothetical protein LOC343990 [Homo sapiens] 44 3e-04
gi|136255216 proline-rich transmembrane protein 3 [Homo sapiens] 44 3e-04
gi|239754940 PREDICTED: hypothetical protein [Homo sapiens] 43 3e-04
gi|23238226 CDC42 effector protein 1 [Homo sapiens] 43 3e-04
gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 43 4e-04
gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 43 4e-04
gi|217416350 cask-interacting protein 2 isoform b [Homo sapiens] 43 4e-04
gi|217416347 cask-interacting protein 2 isoform a [Homo sapiens] 43 4e-04
gi|117306167 proline-rich protein BstNI subfamily 3 precursor [H... 43 4e-04
gi|89941479 hypothetical protein LOC148137 [Homo sapiens] 43 4e-04
gi|115527070 alpha 2 type VI collagen isoform 2C2a' precursor [H... 42 6e-04
gi|115527066 alpha 2 type VI collagen isoform 2C2a precursor [Ho... 42 6e-04
gi|115527062 alpha 2 type VI collagen isoform 2C2 precursor [Hom... 42 6e-04
>gi|118200352 hypothetical protein LOC642273 [Homo sapiens]
Length = 321
Score = 643 bits (1659), Expect = 0.0
Identities = 321/321 (100%), Positives = 321/321 (100%)
Query: 1 MRALAALSAPPNERLLPRDPAATRDPDAARPARRSAVERLAADRAKYVRGRPGTGRGVAS 60
MRALAALSAPPNERLLPRDPAATRDPDAARPARRSAVERLAADRAKYVRGRPGTGRGVAS
Sbjct: 1 MRALAALSAPPNERLLPRDPAATRDPDAARPARRSAVERLAADRAKYVRGRPGTGRGVAS 60
Query: 61 EGSGPGAIKCPGNDPGPPARAPAPVARRAIARKPLRPDSLIIYRQKCEFVRGSGADGPRA 120
EGSGPGAIKCPGNDPGPPARAPAPVARRAIARKPLRPDSLIIYRQKCEFVRGSGADGPRA
Sbjct: 61 EGSGPGAIKCPGNDPGPPARAPAPVARRAIARKPLRPDSLIIYRQKCEFVRGSGADGPRA 120
Query: 121 SLVKKLFQGPGKDKAPVPRTGDEGKAGNPETVPTTPGPAADPATPETPAPAARSAAPSSV 180
SLVKKLFQGPGKDKAPVPRTGDEGKAGNPETVPTTPGPAADPATPETPAPAARSAAPSSV
Sbjct: 121 SLVKKLFQGPGKDKAPVPRTGDEGKAGNPETVPTTPGPAADPATPETPAPAARSAAPSSV 180
Query: 181 PAAPPGPEPRVVRRRGLQRSQSDLSSRYSAALAESDTFFQYCGLDPEVVEALGRENFTAG 240
PAAPPGPEPRVVRRRGLQRSQSDLSSRYSAALAESDTFFQYCGLDPEVVEALGRENFTAG
Sbjct: 181 PAAPPGPEPRVVRRRGLQRSQSDLSSRYSAALAESDTFFQYCGLDPEVVEALGRENFTAG 240
Query: 241 SDCVTLKVRSVSVATSGSGFSRHSGGDDEGLQEEELIEQVPSTTSVIERNARIIKWLYTC 300
SDCVTLKVRSVSVATSGSGFSRHSGGDDEGLQEEELIEQVPSTTSVIERNARIIKWLYTC
Sbjct: 241 SDCVTLKVRSVSVATSGSGFSRHSGGDDEGLQEEELIEQVPSTTSVIERNARIIKWLYTC 300
Query: 301 KKAKETPSQEQSRTRGSKPSR 321
KKAKETPSQEQSRTRGSKPSR
Sbjct: 301 KKAKETPSQEQSRTRGSKPSR 321
>gi|46391104 hypothetical protein LOC83541 [Homo sapiens]
Length = 295
Score = 119 bits (297), Expect = 5e-27
Identities = 108/309 (34%), Positives = 136/309 (44%), Gaps = 45/309 (14%)
Query: 14 RLLPRDPA-ATRDPDAARPARRSAVERLAADRAKYVRGRPGTGRGVASEGSGPGAIKCPG 72
RL R P R P + SAVERL AD+AKYV+ E P K P
Sbjct: 19 RLRTRVPGYLLRGPADGGARKPSAVERLEADKAKYVKSLHVA--NTRQEPVQPLLSKQPL 76
Query: 73 NDPGPPARAPAPVARRAIARKPLRPDSLIIYRQKCEFVRGSGADGPRASLVKKLFQGPGK 132
P P +RRA+ RP + + S AS + PG+
Sbjct: 77 FSPETRRTVLTP-SRRALPGPCRRPQLDLDILSSLIDLCDSPVSPAEAS------RTPGR 129
Query: 133 DKAPVPRTGDEGKAGNPETVPTTPGPAAD----------PATPETPAPAARSAAPSSVPA 182
EG P P P P+ PA+P P P+ AA SS PA
Sbjct: 130 ---------AEGAGRPPPATPPRPPPSTSAVRRVDVRPLPASPARPCPSPGPAAASS-PA 179
Query: 183 APPGPEPRVVRRRGLQRSQSDLSSRYSAALAESDTFFQYCGLDPEVVEALGRENFT-AGS 241
PP GLQRS+SDLS R+S A A+ + FF +CGLDPE LG + A S
Sbjct: 180 RPP----------GLQRSKSDLSERFSRAAADLERFFNFCGLDPEEARGLGVAHLARASS 229
Query: 242 DCVTLKVRSVSVATSGSGFSRHSGGDDEGLQEEELIEQVPSTTSVIERNARIIKWLYTCK 301
D V+L S +S G SR S EE E+VP SV+ERNAR+IKWLY +
Sbjct: 230 DIVSLAGPSAGPGSSEGGCSRRS----SVTVEERARERVPYGVSVVERNARVIKWLYGLR 285
Query: 302 KAKETPSQE 310
+A+E+P+ E
Sbjct: 286 QARESPAAE 294
>gi|108389127 hypothetical protein LOC83541 [Homo sapiens]
Length = 295
Score = 119 bits (297), Expect = 5e-27
Identities = 108/309 (34%), Positives = 136/309 (44%), Gaps = 45/309 (14%)
Query: 14 RLLPRDPA-ATRDPDAARPARRSAVERLAADRAKYVRGRPGTGRGVASEGSGPGAIKCPG 72
RL R P R P + SAVERL AD+AKYV+ E P K P
Sbjct: 19 RLRTRVPGYLLRGPADGGARKPSAVERLEADKAKYVKSLHVA--NTRQEPVQPLLSKQPL 76
Query: 73 NDPGPPARAPAPVARRAIARKPLRPDSLIIYRQKCEFVRGSGADGPRASLVKKLFQGPGK 132
P P +RRA+ RP + + S AS + PG+
Sbjct: 77 FSPETRRTVLTP-SRRALPGPCRRPQLDLDILSSLIDLCDSPVSPAEAS------RTPGR 129
Query: 133 DKAPVPRTGDEGKAGNPETVPTTPGPAAD----------PATPETPAPAARSAAPSSVPA 182
EG P P P P+ PA+P P P+ AA SS PA
Sbjct: 130 ---------AEGAGRPPPATPPRPPPSTSAVRRVDVRPLPASPARPCPSPGPAAASS-PA 179
Query: 183 APPGPEPRVVRRRGLQRSQSDLSSRYSAALAESDTFFQYCGLDPEVVEALGRENFT-AGS 241
PP GLQRS+SDLS R+S A A+ + FF +CGLDPE LG + A S
Sbjct: 180 RPP----------GLQRSKSDLSERFSRAAADLERFFNFCGLDPEEARGLGVAHLARASS 229
Query: 242 DCVTLKVRSVSVATSGSGFSRHSGGDDEGLQEEELIEQVPSTTSVIERNARIIKWLYTCK 301
D V+L S +S G SR S EE E+VP SV+ERNAR+IKWLY +
Sbjct: 230 DIVSLAGPSAGPGSSEGGCSRRS----SVTVEERARERVPYGVSVVERNARVIKWLYGLR 285
Query: 302 KAKETPSQE 310
+A+E+P+ E
Sbjct: 286 QARESPAAE 294
>gi|13937401 hypothetical protein LOC83541 [Homo sapiens]
Length = 295
Score = 119 bits (297), Expect = 5e-27
Identities = 108/309 (34%), Positives = 136/309 (44%), Gaps = 45/309 (14%)
Query: 14 RLLPRDPA-ATRDPDAARPARRSAVERLAADRAKYVRGRPGTGRGVASEGSGPGAIKCPG 72
RL R P R P + SAVERL AD+AKYV+ E P K P
Sbjct: 19 RLRTRVPGYLLRGPADGGARKPSAVERLEADKAKYVKSLHVA--NTRQEPVQPLLSKQPL 76
Query: 73 NDPGPPARAPAPVARRAIARKPLRPDSLIIYRQKCEFVRGSGADGPRASLVKKLFQGPGK 132
P P +RRA+ RP + + S AS + PG+
Sbjct: 77 FSPETRRTVLTP-SRRALPGPCRRPQLDLDILSSLIDLCDSPVSPAEAS------RTPGR 129
Query: 133 DKAPVPRTGDEGKAGNPETVPTTPGPAAD----------PATPETPAPAARSAAPSSVPA 182
EG P P P P+ PA+P P P+ AA SS PA
Sbjct: 130 ---------AEGAGRPPPATPPRPPPSTSAVRRVDVRPLPASPARPCPSPGPAAASS-PA 179
Query: 183 APPGPEPRVVRRRGLQRSQSDLSSRYSAALAESDTFFQYCGLDPEVVEALGRENFT-AGS 241
PP GLQRS+SDLS R+S A A+ + FF +CGLDPE LG + A S
Sbjct: 180 RPP----------GLQRSKSDLSERFSRAAADLERFFNFCGLDPEEARGLGVAHLARASS 229
Query: 242 DCVTLKVRSVSVATSGSGFSRHSGGDDEGLQEEELIEQVPSTTSVIERNARIIKWLYTCK 301
D V+L S +S G SR S EE E+VP SV+ERNAR+IKWLY +
Sbjct: 230 DIVSLAGPSAGPGSSEGGCSRRS----SVTVEERARERVPYGVSVVERNARVIKWLYGLR 285
Query: 302 KAKETPSQE 310
+A+E+P+ E
Sbjct: 286 QARESPAAE 294
>gi|117956393 glycine/arginine rich protein 1 [Homo sapiens]
Length = 271
Score = 112 bits (279), Expect = 6e-25
Identities = 98/313 (31%), Positives = 133/313 (42%), Gaps = 66/313 (21%)
Query: 17 PRDPAATRDPDAARPARRSAVERLAADRAKYVRGRPGTGRGV--ASEGSGPGAIKCPGND 74
P P+ R P SAVERL AD+AKYV+ R A GS P N+
Sbjct: 6 PSTPSRGRTP--------SAVERLEADKAKYVKTHQVIARRQEPALRGSPGPLTPHPCNE 57
Query: 75 PGPPA--RAPAPVARRAIARKPLRPDSLIIYRQKCEFVRGSGADGPRAS-LVKKLFQGPG 131
GPPA R P PV RR R+ RPDSLI YRQK + + + LV++LF G
Sbjct: 58 LGPPASPRTPRPV-RRGSGRRLPRPDSLIFYRQKRDCKASVNKENAKGQGLVRRLFLGAP 116
Query: 132 KDKAPVPRTGDEGKAGNPETVPTTPGPAADPATPETPAPAARSAAPSSVPAAPPGPEPRV 191
+D AP + PA+ E PA + AAP P A
Sbjct: 117 RDAAP-----------------------SSPASTERPAASGGWAAPQDAPEAA------- 146
Query: 192 VRRRGLQRSQSDLSSRYSAALAESDTFFQYCGLDPEVVEALGRENFTAGSDCVTLKVRSV 251
+ L S L+E + FF YCGL+ +VE LG E F+ S ++
Sbjct: 147 --------GKRALCPTCSLPLSEKERFFNYCGLERALVEVLGAERFSPQSWGADASPQAG 198
Query: 252 SVATSGSGFSRHSGGDDEGLQEE-------------ELIEQVPSTTSVIERNARIIKWLY 298
+ GSG + D G+ ++ P SV+ERNAR+I+WLY
Sbjct: 199 TSPPPGSGDASDWTSSDRGVDSPGGAGGGGGSEAAGSARDRRPPV-SVVERNARVIQWLY 257
Query: 299 TCKKAKETPSQEQ 311
C++A+ P + +
Sbjct: 258 GCQRARGPPRESE 270
>gi|22218339 hypothetical protein LOC90362 [Homo sapiens]
Length = 370
Score = 111 bits (278), Expect = 8e-25
Identities = 68/151 (45%), Positives = 87/151 (57%), Gaps = 4/151 (2%)
Query: 158 PAADPATPETPAPAARSAAPSSVPAAPP-GPEPRVVRRRGLQRSQSDLSSRYSAALAESD 216
P + A P P P + A P A P P V RR LQRS+SDLS RY A+ +
Sbjct: 216 PCSSSAPPLPPKPKIAAIASMKSPEADPVEPACGVSRRPSLQRSKSDLSDRYFRVDADVE 275
Query: 217 TFFQYCGLDPEVVEALGRENFT-AGSDCVTLKVRSVSVATSGSGFSRHSGGDDEGLQEEE 275
FF YCGLDPE +E LG ENF A SD ++L RS S+ +S S+ S D ++
Sbjct: 276 RFFNYCGLDPEELENLGMENFARANSDIISLNFRSASMISSDCEQSQDSNSDLR--NDDS 333
Query: 276 LIEQVPSTTSVIERNARIIKWLYTCKKAKET 306
++VP S IERNARIIKWLY+ K+A+E+
Sbjct: 334 ANDRVPYGISAIERNARIIKWLYSIKQARES 364
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 50.8 bits (120), Expect = 2e-06
Identities = 58/186 (31%), Positives = 71/186 (38%), Gaps = 26/186 (13%)
Query: 10 PPNER--LLPRDPAATRDPDAAR---PARRSAVERLAADRAKYVRGRPGTGRGVASEGSG 64
PP+ R L+P PA P AA+ P SA A V P ++ +G
Sbjct: 107 PPSPRRPLVPAGPA----PPAAKLRPPPEGSAGSCAPVPAAAAVAAGPEPAPAGPAKPAG 162
Query: 65 PGAIKC---PGNDPGP-PARAPAPVARRAIARKPLRPDSLIIYRQKCEFVRGSGADGPRA 120
P A+ PG PGP P P P KP P + + A P
Sbjct: 163 PAALAARAGPGPGPGPGPGPGPGP-------GKPAGPGAAQTLNGSAALLNSHHAAAPAV 215
Query: 121 SLVKKLFQGPGKDKAPVPRTGDEGKA-GNPETVPTTPGPA-ADPATPETPAPAARSAAPS 178
SLV GP P+P+ G P V PA A P+ P PAPAA +AAP
Sbjct: 216 SLVNN---GPAA-LLPLPKPAAPGTVIQTPPFVGAAAPPAPAAPSPPAAPAPAAPAAAPP 271
Query: 179 SVPAAP 184
P AP
Sbjct: 272 PPPPAP 277
Score = 42.7 bits (99), Expect = 4e-04
Identities = 52/169 (30%), Positives = 62/169 (36%), Gaps = 23/169 (13%)
Query: 53 GTGRGVASEGSGPGAIKCPGNDPGPPARAPAPVARRAIARKPLRPDSLIIYRQKCEFVRG 112
G+ G A G A PG P PP PA AR P RP R
Sbjct: 65 GSPAGAAGAGPAAPAEGAPGAAPEPP---PAGRARPG-GGGPQRPGPPSPRRPLVP---- 116
Query: 113 SGADGPRASLVKKLFQGPGKDKAPVPRTGDEGKAGNPETVPTTPGPAADPATPETPAPAA 172
P A+ ++ +G APVP A PE P A PA P PA A
Sbjct: 117 -AGPAPPAAKLRPPPEGSAGSCAPVPAAA--AVAAGPEPAP------AGPAKPAGPAALA 167
Query: 173 RSAAPSSVPAAPPGPEPRVVRRRG------LQRSQSDLSSRYSAALAES 215
A P P PGP P + G L S + L+S ++AA A S
Sbjct: 168 ARAGPGPGPGPGPGPGPGPGKPAGPGAAQTLNGSAALLNSHHAAAPAVS 216
Score = 38.1 bits (87), Expect = 0.011
Identities = 57/194 (29%), Positives = 66/194 (34%), Gaps = 52/194 (26%)
Query: 21 AATRDPDAARPARRSAVERLAADRAKYVRGRPGTGRGVASEGSGPGAIKCPGNDPGPPAR 80
AA +P A PA+ + LAA R PG G G G GPG PG GP A
Sbjct: 147 AAGPEPAPAGPAKPAGPAALAA------RAGPGPGPG-PGPGPGPG----PGKPAGPGAA 195
Query: 81 ----------------APA-------PVARRAIARKPLRPDSLIIYRQKCEFVRGSGADG 117
APA P A + KP P ++I Q FV +
Sbjct: 196 QTLNGSAALLNSHHAAAPAVSLVNNGPAALLPLP-KPAAPGTVI---QTPPFVGAAAPPA 251
Query: 118 PRASLVKKLFQGPGKDKAPVPRTGDEGKAGNPETVPTTPGPAADPAT--PETPAPAA--- 172
P A P P P T+ PG A P T P P PAA
Sbjct: 252 PAAP------SPPAAPAPAAPAAAPPPPPPAPATLARPPGHPAGPPTAAPAVPPPAAAQN 305
Query: 173 ---RSAAPSSVPAA 183
AAP+ PAA
Sbjct: 306 GGSAGAAPAPAPAA 319
Score = 34.3 bits (77), Expect = 0.15
Identities = 41/181 (22%), Positives = 50/181 (27%), Gaps = 40/181 (22%)
Query: 3 ALAALSAPPNERLLPRDPAATRDPDAARPARRSAVERLAADRAKYVRGRPGTGRGVASEG 62
A A PP L R P P A PA + A G G A
Sbjct: 267 AAAPPPPPPAPATLARPPGHPAGPPTAAPA-------VPPPAAAQNGGSAGAAPAPAPAA 319
Query: 63 SGPGAIKCPGNDPGPPARAPAPVARRAIARKPLRPDSLIIYRQKCEFVRGSGADGPRASL 122
GP + PGP A A AP A G +A
Sbjct: 320 GGPAGVS---GQPGPGAAAAAP------------------------------APGVKAES 346
Query: 123 VKKLFQGPGKDKAPVPRTGDEGKAGNPETVPTTPGPAADPATPETPAPAARSAAPSSVPA 182
K++ Q + +G A + PT G PA PAP + P
Sbjct: 347 PKRVVQAAPPAAQTLAASGPASTAASMVIGPTMQGALPSPAAVPPPAPGTPTGLPKGAAG 406
Query: 183 A 183
A
Sbjct: 407 A 407
>gi|150170670 piccolo isoform 2 [Homo sapiens]
Length = 4935
Score = 49.7 bits (117), Expect = 4e-06
Identities = 38/153 (24%), Positives = 58/153 (37%), Gaps = 4/153 (2%)
Query: 53 GTGRGVASEGSGPGAIKCPGNDPGPPARAPAPVARRAIARKPLRPDSLIIYRQKCEFVRG 112
GT + ++S+ P IK G P + P + A+ PL+ D+ ++ + VRG
Sbjct: 234 GTPKSISSQQ--PEKIKSQPPGTGKPIQGPTQTPQTDHAKLPLQRDASRPQTKQADIVRG 291
Query: 113 SGADGPRASLVKKLFQGPGKDKAPVPRTGDEGKAGNPETVPTTPGPAADPAT--PETPAP 170
S K Q P K P + G E P P P P P T P
Sbjct: 292 ESVKPSLPSPSKPPIQQPTPGKPPAQQPGHEKSQPGPAKPPAQPSGLTKPLAQQPGTVKP 351
Query: 171 AARSAAPSSVPAAPPGPEPRVVRRRGLQRSQSD 203
+ + PA P GP ++ G ++ S+
Sbjct: 352 PVQPPGTTKPPAQPLGPAKPPAQQTGSEKPSSE 384
Score = 43.1 bits (100), Expect = 3e-04
Identities = 56/215 (26%), Positives = 82/215 (38%), Gaps = 51/215 (23%)
Query: 3 ALAALSAPPNERLLPRDPAATRDPDAARPARRSAVERLAADRAKYVRGRPGTGRGVASEG 62
+L + S PP ++ P P PA++ E+ AK G + +A +
Sbjct: 297 SLPSPSKPPIQQPTPGKP----------PAQQPGHEKSQPGPAKPPAQPSGLTKPLAQQ- 345
Query: 63 SGPGAIKCPGNDPG---PPAR--APA-PVARRAIARKPLRPDSLIIYRQKCEFVRGSGAD 116
PG +K P PG PPA+ PA P A++ + KP S
Sbjct: 346 --PGTVKPPVQPPGTTKPPAQPLGPAKPPAQQTGSEKP-----------------SSEQP 386
Query: 117 GPRASLVKKLFQGPGKDKAPVPRTGDEG----KAGNPETVPTTPG---PAADPATPETPA 169
GP+A L Q PG K P + G + G P+ + PG PA P +TP
Sbjct: 387 GPKA-----LAQPPGVGKTPAQQPGPAKPPTQQVGTPKPLAQQPGLQSPAKAPGPTKTPV 441
Query: 170 PAARSAAPSSVPAAPPGPEPRVVRRRGLQRSQSDL 204
+ P +PA GP ++ G + S L
Sbjct: 442 ---QQPGPGKIPAQQAGPGKTSAQQTGPTKPPSQL 473
Score = 42.7 bits (99), Expect = 4e-04
Identities = 52/189 (27%), Positives = 73/189 (38%), Gaps = 48/189 (25%)
Query: 10 PPNERLLPRDPAATRDPDAARPARRSAVERLAADRA--KYVRGRPGTGRGVASEGSGPGA 67
PP P P P PA+++ E+ ++++ K + PG G+ A + PG
Sbjct: 355 PPGTTKPPAQPLGPAKP----PAQQTGSEKPSSEQPGPKALAQPPGVGKTPAQQ---PGP 407
Query: 68 IKCPGNDPGPPARAPAPVARRAIARKPLRPDSLIIYRQKCEFVRGSGADGPRASLVKKLF 127
K P G P P+A++ + P + A GP + V
Sbjct: 408 AKPPTQQVG----TPKPLAQQPGLQSPAK------------------APGPTKTPV---- 441
Query: 128 QGPGKDKAPVPRTGDEGKAGNPETVPT-----TPGPAADPATPETPAPAARSAAPSSVP- 181
Q PG K P + G GK +T PT PGPA P P+ P PA P P
Sbjct: 442 QQPGPGKIPAQQAG-PGKTSAQQTGPTKPPSQLPGPAKPP--PQQPGPA---KPPPQQPG 495
Query: 182 -AAPPGPEP 189
A PP +P
Sbjct: 496 SAKPPSQQP 504
Score = 34.3 bits (77), Expect = 0.15
Identities = 48/212 (22%), Positives = 70/212 (33%), Gaps = 45/212 (21%)
Query: 57 GVASEGSGPGAIKCPGNDPGP---PARAPAPVARRAIARKPLRPDSLIIYRQKCEFVRGS 113
G+ S PG K P PGP PA+ P A P +P S +
Sbjct: 426 GLQSPAKAPGPTKTPVQQPGPGKIPAQQAGPGKTSAQQTGPTKPPSQL------------ 473
Query: 114 GADGPRASLVKKLFQGPGKDKAPVPRTGD----EGKAGNPETVPTTPGPAADPATPETPA 169
GP K Q PG K P + G + G+ + P PGPA P
Sbjct: 474 --PGP----AKPPPQQPGPAKPPPQQPGSAKPPSQQPGSTKPPPQQPGPAK----PSPQQ 523
Query: 170 PAAR--------SAAPSSVPAAPPGPEPRVVRR--------RGLQRSQSDLSSRYSAALA 213
P + SA PS+ +P P + + + LQ S++ +
Sbjct: 524 PGSTKPPSQQPGSAKPSAQQPSPAKPSAQQSTKPVSQTGSGKPLQPPTVSPSAKQPPSQG 583
Query: 214 ESDTFFQYCGLDPEVVEALGRENFTAGSDCVT 245
T C ++ + NF ++C T
Sbjct: 584 LPKTICPLCNTTELLLHVPEKANFNTCTECQT 615
Score = 30.8 bits (68), Expect = 1.7
Identities = 40/178 (22%), Positives = 62/178 (34%), Gaps = 16/178 (8%)
Query: 17 PRDPAATRDPDAARPARRSAVERLAADRAKYVRGRPGTGRGVASEGSGPGAIKCPGNDPG 76
P T P A +P +S + A K +PG G+ + ++ +GPG P
Sbjct: 411 PTQQVGTPKPLAQQPGLQSPAK--APGPTKTPVQQPGPGK-IPAQQAGPGKTSAQQTGPT 467
Query: 77 -PPARAPAPVARRAIARKPLRPDSLIIYRQKCEFVRGSGADGP--RASLVKKLFQGPGKD 133
PP++ P P P +P K + P + K Q PG
Sbjct: 468 KPPSQLPGPAKPPPQQPGPAKPPPQQPGSAKPPSQQPGSTKPPPQQPGPAKPSPQQPGST 527
Query: 134 KAPVPRTGD-EGKAGNPE---------TVPTTPGPAADPATPETPAPAARSAAPSSVP 181
K P + G + A P T P + + P P T +P+A+ +P
Sbjct: 528 KPPSQQPGSAKPSAQQPSPAKPSAQQSTKPVSQTGSGKPLQPPTVSPSAKQPPSQGLP 585
Score = 28.9 bits (63), Expect = 6.4
Identities = 11/38 (28%), Positives = 17/38 (44%)
Query: 149 PETVPTTPGPAADPATPETPAPAARSAAPSSVPAAPPG 186
P+ +P GP DP + + S P + + PPG
Sbjct: 216 PKPIPKQQGPGRDPLQQDGTPKSISSQQPEKIKSQPPG 253
>gi|150378539 piccolo isoform 1 [Homo sapiens]
Length = 5142
Score = 49.7 bits (117), Expect = 4e-06
Identities = 38/153 (24%), Positives = 58/153 (37%), Gaps = 4/153 (2%)
Query: 53 GTGRGVASEGSGPGAIKCPGNDPGPPARAPAPVARRAIARKPLRPDSLIIYRQKCEFVRG 112
GT + ++S+ P IK G P + P + A+ PL+ D+ ++ + VRG
Sbjct: 234 GTPKSISSQQ--PEKIKSQPPGTGKPIQGPTQTPQTDHAKLPLQRDASRPQTKQADIVRG 291
Query: 113 SGADGPRASLVKKLFQGPGKDKAPVPRTGDEGKAGNPETVPTTPGPAADPAT--PETPAP 170
S K Q P K P + G E P P P P P T P
Sbjct: 292 ESVKPSLPSPSKPPIQQPTPGKPPAQQPGHEKSQPGPAKPPAQPSGLTKPLAQQPGTVKP 351
Query: 171 AARSAAPSSVPAAPPGPEPRVVRRRGLQRSQSD 203
+ + PA P GP ++ G ++ S+
Sbjct: 352 PVQPPGTTKPPAQPLGPAKPPAQQTGSEKPSSE 384
Score = 43.1 bits (100), Expect = 3e-04
Identities = 56/215 (26%), Positives = 82/215 (38%), Gaps = 51/215 (23%)
Query: 3 ALAALSAPPNERLLPRDPAATRDPDAARPARRSAVERLAADRAKYVRGRPGTGRGVASEG 62
+L + S PP ++ P P PA++ E+ AK G + +A +
Sbjct: 297 SLPSPSKPPIQQPTPGKP----------PAQQPGHEKSQPGPAKPPAQPSGLTKPLAQQ- 345
Query: 63 SGPGAIKCPGNDPG---PPAR--APA-PVARRAIARKPLRPDSLIIYRQKCEFVRGSGAD 116
PG +K P PG PPA+ PA P A++ + KP S
Sbjct: 346 --PGTVKPPVQPPGTTKPPAQPLGPAKPPAQQTGSEKP-----------------SSEQP 386
Query: 117 GPRASLVKKLFQGPGKDKAPVPRTGDEG----KAGNPETVPTTPG---PAADPATPETPA 169
GP+A L Q PG K P + G + G P+ + PG PA P +TP
Sbjct: 387 GPKA-----LAQPPGVGKTPAQQPGPAKPPTQQVGTPKPLAQQPGLQSPAKAPGPTKTPV 441
Query: 170 PAARSAAPSSVPAAPPGPEPRVVRRRGLQRSQSDL 204
+ P +PA GP ++ G + S L
Sbjct: 442 ---QQPGPGKIPAQQAGPGKTSAQQTGPTKPPSQL 473
Score = 42.7 bits (99), Expect = 4e-04
Identities = 52/189 (27%), Positives = 73/189 (38%), Gaps = 48/189 (25%)
Query: 10 PPNERLLPRDPAATRDPDAARPARRSAVERLAADRA--KYVRGRPGTGRGVASEGSGPGA 67
PP P P P PA+++ E+ ++++ K + PG G+ A + PG
Sbjct: 355 PPGTTKPPAQPLGPAKP----PAQQTGSEKPSSEQPGPKALAQPPGVGKTPAQQ---PGP 407
Query: 68 IKCPGNDPGPPARAPAPVARRAIARKPLRPDSLIIYRQKCEFVRGSGADGPRASLVKKLF 127
K P G P P+A++ + P + A GP + V
Sbjct: 408 AKPPTQQVG----TPKPLAQQPGLQSPAK------------------APGPTKTPV---- 441
Query: 128 QGPGKDKAPVPRTGDEGKAGNPETVPT-----TPGPAADPATPETPAPAARSAAPSSVP- 181
Q PG K P + G GK +T PT PGPA P P+ P PA P P
Sbjct: 442 QQPGPGKIPAQQAG-PGKTSAQQTGPTKPPSQLPGPAKPP--PQQPGPA---KPPPQQPG 495
Query: 182 -AAPPGPEP 189
A PP +P
Sbjct: 496 SAKPPSQQP 504
Score = 34.3 bits (77), Expect = 0.15
Identities = 48/212 (22%), Positives = 70/212 (33%), Gaps = 45/212 (21%)
Query: 57 GVASEGSGPGAIKCPGNDPGP---PARAPAPVARRAIARKPLRPDSLIIYRQKCEFVRGS 113
G+ S PG K P PGP PA+ P A P +P S +
Sbjct: 426 GLQSPAKAPGPTKTPVQQPGPGKIPAQQAGPGKTSAQQTGPTKPPSQL------------ 473
Query: 114 GADGPRASLVKKLFQGPGKDKAPVPRTGD----EGKAGNPETVPTTPGPAADPATPETPA 169
GP K Q PG K P + G + G+ + P PGPA P
Sbjct: 474 --PGP----AKPPPQQPGPAKPPPQQPGSAKPPSQQPGSTKPPPQQPGPAK----PSPQQ 523
Query: 170 PAAR--------SAAPSSVPAAPPGPEPRVVRR--------RGLQRSQSDLSSRYSAALA 213
P + SA PS+ +P P + + + LQ S++ +
Sbjct: 524 PGSTKPPSQQPGSAKPSAQQPSPAKPSAQQSTKPVSQTGSGKPLQPPTVSPSAKQPPSQG 583
Query: 214 ESDTFFQYCGLDPEVVEALGRENFTAGSDCVT 245
T C ++ + NF ++C T
Sbjct: 584 LPKTICPLCNTTELLLHVPEKANFNTCTECQT 615
Score = 30.8 bits (68), Expect = 1.7
Identities = 40/178 (22%), Positives = 62/178 (34%), Gaps = 16/178 (8%)
Query: 17 PRDPAATRDPDAARPARRSAVERLAADRAKYVRGRPGTGRGVASEGSGPGAIKCPGNDPG 76
P T P A +P +S + A K +PG G+ + ++ +GPG P
Sbjct: 411 PTQQVGTPKPLAQQPGLQSPAK--APGPTKTPVQQPGPGK-IPAQQAGPGKTSAQQTGPT 467
Query: 77 -PPARAPAPVARRAIARKPLRPDSLIIYRQKCEFVRGSGADGP--RASLVKKLFQGPGKD 133
PP++ P P P +P K + P + K Q PG
Sbjct: 468 KPPSQLPGPAKPPPQQPGPAKPPPQQPGSAKPPSQQPGSTKPPPQQPGPAKPSPQQPGST 527
Query: 134 KAPVPRTGD-EGKAGNPE---------TVPTTPGPAADPATPETPAPAARSAAPSSVP 181
K P + G + A P T P + + P P T +P+A+ +P
Sbjct: 528 KPPSQQPGSAKPSAQQPSPAKPSAQQSTKPVSQTGSGKPLQPPTVSPSAKQPPSQGLP 585
Score = 28.9 bits (63), Expect = 6.4
Identities = 11/38 (28%), Positives = 17/38 (44%)
Query: 149 PETVPTTPGPAADPATPETPAPAARSAAPSSVPAAPPG 186
P+ +P GP DP + + S P + + PPG
Sbjct: 216 PKPIPKQQGPGRDPLQQDGTPKSISSQQPEKIKSQPPG 253
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 48.9 bits (115), Expect = 6e-06
Identities = 46/139 (33%), Positives = 56/139 (40%), Gaps = 24/139 (17%)
Query: 50 GRPGTGRGVASEGSGPGAIKCPGNDPGPPARAPAPVARRAIARKPLRPDSLIIYRQKCEF 109
G PG G+G E PGA PG+ PGPP P+ P R +
Sbjct: 1026 GSPG-GKGDRGENGSPGAPGAPGH-PGPPG--------------PVGPAGKSGDRGESGP 1069
Query: 110 VRGSGADGPRASLVKKLFQGPGKDKAPVPRTGDEGKAGNPETVPTTPGPAADPATPETPA 169
+GA GP S QGP DK TG+ G AG + G +P P +P
Sbjct: 1070 AGPAGAPGPAGSRGAPGPQGPRGDKG---ETGERGAAG----IKGHRGFPGNPGAPGSPG 1122
Query: 170 PAARSAAPSSV-PAAPPGP 187
PA + A S PA P GP
Sbjct: 1123 PAGQQGAIGSPGPAGPRGP 1141
Score = 44.3 bits (103), Expect = 1e-04
Identities = 63/239 (26%), Positives = 78/239 (32%), Gaps = 72/239 (30%)
Query: 1 MRALAALSAPPNERLLPRDPAATRDP----------DAARPARRSAVERLAADRAKYVRG 50
++ L PP E P +P D DA P R A + G
Sbjct: 640 LQGLPGTGGPPGENGKPGEPGPKGDAGAPGAPGGKGDAGAPGERGPPGLAGAPGLRGGAG 699
Query: 51 RPGT--GRGVASEGSGPGAIKCPGNDPGPPAR----APAPVARRAIARKPLRPDSLIIYR 104
PG G+G A PGA PG P R +P P + +P P + +
Sbjct: 700 PPGPEGGKGAAGPPGPPGAAGTPGLQGMPGERGGLGSPGPKGDKG---EPGGPGADGV-- 754
Query: 105 QKCEFVRGSGADGPRASLVKKLFQGPGKDKAPVPRTGDEGKAGNP--------------- 149
G DGPR GP P + GD+G+ G P
Sbjct: 755 --------PGKDGPRGP------TGPIGPPGPAGQPGDKGEGGAPGLPGIAGPRGSPGER 800
Query: 150 -ETVPTTPGPAADPATP----------ETPAPAARS-------AAP--SSVPAAPPGPE 188
ET P PGPA P P E AP + A P S PA PPGP+
Sbjct: 801 GETGP--PGPAGFPGAPGQNGEPGGKGERGAPGEKGEGGPPGVAGPPGGSGPAGPPGPQ 857
Score = 43.9 bits (102), Expect = 2e-04
Identities = 49/179 (27%), Positives = 65/179 (36%), Gaps = 10/179 (5%)
Query: 9 APPNERLLPRDPAATRDPDAARPARRSAVE--RLAADRAKYVRGRPGTGRGVASEGS-GP 65
A PN + PA R R +A E R +RG PG+ G S+G GP
Sbjct: 494 AGPNGIPGEKGPAGERGAPGPAGPRGAAGEPGRDGVPGGPGMRGMPGSPGGPGSDGKPGP 553
Query: 66 GAIKCPGNDPGPPARAPAPVARRAIARKPLRPDSLIIYRQKCEFVRGSGADGPRASLVKK 125
+ PGPP + P + + P P K G G GP+ K
Sbjct: 554 PGSQGESGRPGPPGPS-GPRGQPGVMGFP-GPKGNDGAPGKNGERGGPGGPGPQGPPGKN 611
Query: 126 LFQGPGKDKAPVPRTGDEGKAGNP-----ETVPTTPGPAADPATPETPAPAARSAAPSS 179
GP P GD+G G P + +P T GP + P P P + AP +
Sbjct: 612 GETGPQGPPGPTGPGGDKGDTGPPGPQGLQGLPGTGGPPGENGKPGEPGPKGDAGAPGA 670
Score = 36.6 bits (83), Expect = 0.031
Identities = 42/143 (29%), Positives = 55/143 (38%), Gaps = 36/143 (25%)
Query: 49 RGRPGTGRGVASEGSGPGAIKCPGNDPGPPARAPAPVARRAIARKPLRPDSLIIYRQKCE 108
RG PG +GV E PGA G + GPP P A +P R +
Sbjct: 968 RGSPGP-QGVKGESGKPGANGLSG-ERGPPGPQGLP-GLAGTAGEPGRDGN--------- 1015
Query: 109 FVRGSGADGPRASLVKKLFQGPGKDKAPVPRTGDEGKAGNPETVPTTPGPAADPATPETP 168
G+DG PG+D +P + GD G+ G+P PG P P
Sbjct: 1016 ----PGSDGL-----------PGRDGSPGGK-GDRGENGSPGA----PGAPGHPGPPGPV 1055
Query: 169 APAARSA----APSSVPAAPPGP 187
PA +S + + PA PGP
Sbjct: 1056 GPAGKSGDRGESGPAGPAGAPGP 1078
Score = 36.2 bits (82), Expect = 0.040
Identities = 55/194 (28%), Positives = 62/194 (31%), Gaps = 39/194 (20%)
Query: 8 SAPPNERLLPRDPAATRDPDAARPARRSAVERLAADRAKYVRGRPGTGRGVASEGSGPGA 67
+ PP P P +P R A V G PG G G A GP
Sbjct: 803 TGPPGPAGFPGAPGQNGEPGGK--GERGAPGEKGEGGPPGVAGPPG-GSGPAGP-PGPQG 858
Query: 68 IKCPGNDPGPPARAPAPVARRAIARKPLRPDSLIIYRQKCEFVRGSGADGPRASLVKKLF 127
+K PG P A P AR P P S G GP S
Sbjct: 859 VKGERGSPGGPGAAGFPGARGL----PGPPGS----------NGNPGPPGPSGS------ 898
Query: 128 QGPGKDKAPVPRTGDEGKAGNPETVPTTPGPAADPATPETPAPAARSAAPSSVP------ 181
PGKD P P G+ G G+P V G A P +P AP +
Sbjct: 899 --PGKDGPPGP-AGNTGAPGSP-GVSGPKGDAGQPGEKGSPGAQGPPGAPGPLGIAGITG 954
Query: 182 ----AAPPG-PEPR 190
A PPG P PR
Sbjct: 955 ARGLAGPPGMPGPR 968
Score = 32.3 bits (72), Expect = 0.58
Identities = 38/150 (25%), Positives = 47/150 (31%), Gaps = 29/150 (19%)
Query: 49 RGRPGTGRGVASEGSGPGAIKCPGND-----PGPPAR--APAPVARRAIA--RKPLRPDS 99
+G PG RG E PG G D PG P P R R P P+
Sbjct: 440 KGEPGP-RGERGEAGIPGVPGAKGEDGKDGSPGEPGANGLPGAAGERGAPGFRGPAGPNG 498
Query: 100 LIIYRQKCEFVRGSGADGPRASLVKKLFQGPGKDKAPVPRTGDEGKAGNP--ETVPTTPG 157
+ G GP ++ GP + G +G G P +P +PG
Sbjct: 499 I------------PGEKGPAG---ERGAPGPAGPRGAAGEPGRDGVPGGPGMRGMPGSPG 543
Query: 158 PAADPATPETPAPAARSAAPSSVPAAPPGP 187
P P S P P P GP
Sbjct: 544 GPGSDGKPGPPGSQGESGRPG--PPGPSGP 571
Score = 31.6 bits (70), Expect = 0.99
Identities = 18/61 (29%), Positives = 22/61 (36%), Gaps = 1/61 (1%)
Query: 128 QGPGKDKAPVPRTGDEGKAGNPETVPTTPGPAADPATPETPAPAARSAAPSSVPAAPPGP 187
Q P P G +G G+P P PG DP P P P + P GP
Sbjct: 90 QPPTAPTRPPNGQGPQGPKGDPGP-PGIPGRNGDPGIPGQPGSPGSPGPPGICESCPTGP 148
Query: 188 E 188
+
Sbjct: 149 Q 149
Score = 30.8 bits (68), Expect = 1.7
Identities = 35/141 (24%), Positives = 45/141 (31%), Gaps = 23/141 (16%)
Query: 51 RPGTGRGVASEGSGPGAIKCPGND-----PGPPARAPAPVARRAIARKPLRPDSLIIYRQ 105
RP G+G PG PG + PG P +P P P +
Sbjct: 97 RPPNGQGPQGPKGDPGPPGIPGRNGDPGIPGQPGSPGSPGPPGICESCPTGPQNYSPQYD 156
Query: 106 KCEFVRGSGADGPRASLVKKLFQGPGKDKAPVPRTGDEGKAGNPETVPTTPGPAADPATP 165
+ G G L PG P P G G +G+P + P +PG P P
Sbjct: 157 SYDVKSGVAVGG--------LAGYPGPAGPPGP-PGPPGTSGHPGS-PGSPGYQGPPGEP 206
Query: 166 ETPAPAARSAAPSSVPAAPPG 186
P+ P PPG
Sbjct: 207 GQAGPSG--------PPGPPG 219
>gi|239749695 PREDICTED: hypothetical protein XP_002347121 [Homo
sapiens]
Length = 594
Score = 47.0 bits (110), Expect = 2e-05
Identities = 56/191 (29%), Positives = 79/191 (41%), Gaps = 37/191 (19%)
Query: 19 DPAATRDPDAARPARRSAVERLAADRAKYVRGRPGTGRGVASEGSGPGAIKCP------- 71
DPA R+P AA A+ LA RA R R G+ G G GPGA + P
Sbjct: 423 DPARRRNPGAAARAK------LAGQRAGRARARTGSQVGSRGRGWGPGAGRVPSGGRRGV 476
Query: 72 GNDPGPPARAPAPVARRAIARKPLRPDSLIIYRQKCEFVRGSGADGPRASLVKKLFQGPG 131
GN A AP R + + D R++ + A R L ++ +GPG
Sbjct: 477 GNPERWGGEAAAPRPSRVLLPELPAVDPARDTRREPD------AAAQRTELGGRVGKGPG 530
Query: 132 KDKAPVPRTGDEGKAGNPETVPTTPGPAADPATPETPAPAARSAAPSSVPAA------PP 185
+ +P G P+++ +PG +P P TP PA A P++V +A P
Sbjct: 531 APPSALP-----GPRPRPDSL--SPG---EPPGPPTPPPA--RALPAAVASARCSLRDPG 578
Query: 186 GPEPRVVRRRG 196
G R+ R G
Sbjct: 579 GGSARIRSRPG 589
Score = 40.8 bits (94), Expect = 0.002
Identities = 47/146 (32%), Positives = 55/146 (37%), Gaps = 22/146 (15%)
Query: 55 GRGVASEGSGPGAIKCPGNDPGPPARAPAPVARRAIARKPLRPDSLIIYRQKCEFVRGSG 114
GRGV + GPG P P A A A +A + R R S + RG G
Sbjct: 409 GRGVCGK-CGPGPWDDPARRRNPGAAARAKLAGQRAGRARARTGSQV-------GSRGRG 460
Query: 115 ADGPRASLVKKLFQGPGKDKAPVPRTGDEGKAGNPETVPTTPGPAADPA--TPETPAPAA 172
GP A V G + R G E A P V PA DPA T P AA
Sbjct: 461 W-GPGAGRVPS---GGRRGVGNPERWGGEAAAPRPSRVLLPELPAVDPARDTRREPDAAA 516
Query: 173 RSA--------APSSVPAAPPGPEPR 190
+ P + P+A PGP PR
Sbjct: 517 QRTELGGRVGKGPGAPPSALPGPRPR 542
Score = 34.3 bits (77), Expect = 0.15
Identities = 33/90 (36%), Positives = 38/90 (42%), Gaps = 11/90 (12%)
Query: 6 ALSAPPNERLLPRDPAATRDPDAARPARRSAVERLAADRAKYVRGRPGTGRGV---ASEG 62
A + P+ LLP PA D AR RR E AA + + GR G G G A G
Sbjct: 486 AAAPRPSRVLLPELPAV----DPARDTRR---EPDAAAQRTELGGRVGKGPGAPPSALPG 538
Query: 63 SGPGAIKC-PGNDPGPPARAPAPVARRAIA 91
P PG PGPP PA A+A
Sbjct: 539 PRPRPDSLSPGEPPGPPTPPPARALPAAVA 568
>gi|239743961 PREDICTED: hypothetical protein XP_002344246 [Homo
sapiens]
Length = 594
Score = 47.0 bits (110), Expect = 2e-05
Identities = 56/191 (29%), Positives = 79/191 (41%), Gaps = 37/191 (19%)
Query: 19 DPAATRDPDAARPARRSAVERLAADRAKYVRGRPGTGRGVASEGSGPGAIKCP------- 71
DPA R+P AA A+ LA RA R R G+ G G GPGA + P
Sbjct: 423 DPARRRNPGAAARAK------LAGQRAGRARARTGSQVGSRGRGWGPGAGRVPSGGRRGV 476
Query: 72 GNDPGPPARAPAPVARRAIARKPLRPDSLIIYRQKCEFVRGSGADGPRASLVKKLFQGPG 131
GN A AP R + + D R++ + A R L ++ +GPG
Sbjct: 477 GNPERWGGEAAAPRPSRVLLPELPAVDPARDTRREPD------AAAQRTELGGRVGKGPG 530
Query: 132 KDKAPVPRTGDEGKAGNPETVPTTPGPAADPATPETPAPAARSAAPSSVPAA------PP 185
+ +P G P+++ +PG +P P TP PA A P++V +A P
Sbjct: 531 APPSALP-----GPRPRPDSL--SPG---EPPGPPTPPPA--RALPAAVASARCSLRDPG 578
Query: 186 GPEPRVVRRRG 196
G R+ R G
Sbjct: 579 GGSARIRSRPG 589
Score = 40.8 bits (94), Expect = 0.002
Identities = 47/146 (32%), Positives = 55/146 (37%), Gaps = 22/146 (15%)
Query: 55 GRGVASEGSGPGAIKCPGNDPGPPARAPAPVARRAIARKPLRPDSLIIYRQKCEFVRGSG 114
GRGV + GPG P P A A A +A + R R S + RG G
Sbjct: 409 GRGVCGK-CGPGPWDDPARRRNPGAAARAKLAGQRAGRARARTGSQV-------GSRGRG 460
Query: 115 ADGPRASLVKKLFQGPGKDKAPVPRTGDEGKAGNPETVPTTPGPAADPA--TPETPAPAA 172
GP A V G + R G E A P V PA DPA T P AA
Sbjct: 461 W-GPGAGRVPS---GGRRGVGNPERWGGEAAAPRPSRVLLPELPAVDPARDTRREPDAAA 516
Query: 173 RSA--------APSSVPAAPPGPEPR 190
+ P + P+A PGP PR
Sbjct: 517 QRTELGGRVGKGPGAPPSALPGPRPR 542
Score = 34.3 bits (77), Expect = 0.15
Identities = 33/90 (36%), Positives = 38/90 (42%), Gaps = 11/90 (12%)
Query: 6 ALSAPPNERLLPRDPAATRDPDAARPARRSAVERLAADRAKYVRGRPGTGRGV---ASEG 62
A + P+ LLP PA D AR RR E AA + + GR G G G A G
Sbjct: 486 AAAPRPSRVLLPELPAV----DPARDTRR---EPDAAAQRTELGGRVGKGPGAPPSALPG 538
Query: 63 SGPGAIKC-PGNDPGPPARAPAPVARRAIA 91
P PG PGPP PA A+A
Sbjct: 539 PRPRPDSLSPGEPPGPPTPPPARALPAAVA 568
>gi|110556644 zinc finger protein, multitype 1 [Homo sapiens]
Length = 1006
Score = 47.0 bits (110), Expect = 2e-05
Identities = 57/207 (27%), Positives = 68/207 (32%), Gaps = 33/207 (15%)
Query: 8 SAPPNERLLPRDPAATRDPDAARPARRSAVERLAADRAKYVRGRPGTGRGVASE------ 61
+APP P PAA P A P R +L A P G A E
Sbjct: 718 AAPPG----PPGPAAPPAPSPAAPVRTRRRRKLYELHAAGAPPPPPPGHAPAPESPRPGS 773
Query: 62 GSGPGAIKCPGNDPGPPARAPAPVARRAIARKPLRPDSLIIYRQKCEFVRGSGADGPRAS 121
GSG G P PGP A P ++++ P P + +C R S A
Sbjct: 774 GSGSGPGLAPARSPGPAADGPIDLSKKPRRPLPGAPAPALADYHECTACRVS-FHSLEAY 832
Query: 122 LVKKLFQGPGKDKAPVPRTGDEGKAGNPETVPTTP------------------GPAADPA 163
L K + P AP P A P P P P A P
Sbjct: 833 LAHKKYSCPA---APPPGALGLPAAACPYCPPNGPVRGDLLEHFRLAHGLLLGAPLAGPG 889
Query: 164 TPETPAPAARSAAPSSVPAAPPGPEPR 190
E PA R +P+ PAA P P R
Sbjct: 890 V-EARTPADRGPSPAPAPAASPQPGSR 915
Score = 38.5 bits (88), Expect = 0.008
Identities = 37/130 (28%), Positives = 45/130 (34%), Gaps = 10/130 (7%)
Query: 70 CPGNDPGPPARAPAPVARRAIARKPLRPDSLIIYRQKCEFVRGSGADGPRASLVKKLFQG 129
CP P PA P+R D L +R + G+ GP +G
Sbjct: 840 CPAAPPPGALGLPAAACPYCPPNGPVRGDLLEHFRLAHGLLLGAPLAGPGVEARTPADRG 899
Query: 130 PGKDKAPV--PRTGDEGKAG--NPETVPTTPGP-----AADPATPETPAPAARSAAPSSV 180
P AP P+ G G PE PGP AA A P PAP + S
Sbjct: 900 PSPAPAPAASPQPGSRGPRDGLGPEPQEPPPGPPPSPAAAPEAVPPPPAPPSYSDKGVQT 959
Query: 181 PA-APPGPEP 189
P+ P P P
Sbjct: 960 PSKGTPAPLP 969
Score = 32.7 bits (73), Expect = 0.44
Identities = 37/144 (25%), Positives = 50/144 (34%), Gaps = 14/144 (9%)
Query: 51 RPGTGRGVASEGSGPGAIKCPGNDPGP----PARAPAPVARRAIARKPLRPDSLIIYRQK 106
+PG+ + S G+G A K P + G P+A + P P + +
Sbjct: 375 QPGSKGEIYSPGAGHPATKLPPDSLGSFQQQHTALQGPLASADLGLAPT-PSPGLDRKAL 433
Query: 107 CEFVRGSGADGPRASLVKKLFQGPGKDKAPVPRTGDEGKAGNPETVPTT-PGPAADPATP 165
E G P A G + PR+ PE P PG A
Sbjct: 434 AEATNGEARAEPLAQ------NGGSSEPPAAPRSIKVEAVEEPEAAPILGPGEPGPQAPS 487
Query: 166 ETPAPAARSAAPSSVPAAPPGPEP 189
TP+P RS AP+ V A P P
Sbjct: 488 RTPSP--RSPAPARVKAELSSPTP 509
Score = 31.6 bits (70), Expect = 0.99
Identities = 66/266 (24%), Positives = 80/266 (30%), Gaps = 88/266 (33%)
Query: 2 RALAALSAP-PNERLLPRD---------PAATRDPDAARPARRSAVERLAADRAKYVRGR 51
R A LS+P P +P + P PDAA PA + ++ +G
Sbjct: 499 RVKAELSSPTPGSSPVPGELGLAGALFLPQYVFGPDAAPPASEILAKMSELVHSRLQQGA 558
Query: 52 PGTGRGVASEGSGPGAIK------------------------CPGN---DPGPPARAPA- 83
G G G A G PGA K C G + P AR P
Sbjct: 559 -GAGAGGAQTGLFPGAPKGATCFECEITFSNVNNYYVHKRLYCSGRRAPEDAPAARRPKA 617
Query: 84 -PVARRAIARKPLRPDSLIIYRQKCEFVRGSGADGPRASLVKKLFQGPGKDKAPVPRTGD 142
P RA +P PD+ R S G R +G G P G
Sbjct: 618 PPGPARAPPGQPAEPDA----------PRSSPGPGARE-------EGAGGAATPEDGAGG 660
Query: 143 EGKAGNPETVPTTPGPAADPATPETPA-------------------------PAARSAAP 177
G G+ + DP+ A P R AAP
Sbjct: 661 RGSEGSQSPGSSVDDAEDDPSRTLCEACNIRFSRHETYTVHKRYYCASRHDPPPRRPAAP 720
Query: 178 SSVP--AAPPGPEP----RVVRRRGL 197
P AAPP P P R RRR L
Sbjct: 721 PGPPGPAAPPAPSPAAPVRTRRRRKL 746
Score = 28.5 bits (62), Expect = 8.4
Identities = 19/48 (39%), Positives = 20/48 (41%), Gaps = 11/48 (22%)
Query: 149 PETVPTTPGPAADPATPETPAPAA-------RSAAPSSVPAAPPGPEP 189
P P PGPAA PA P+PAA R APP P P
Sbjct: 717 PAAPPGPPGPAAPPA----PSPAAPVRTRRRRKLYELHAAGAPPPPPP 760
>gi|40353727 synaptopodin isoform A [Homo sapiens]
Length = 903
Score = 45.8 bits (107), Expect = 5e-05
Identities = 66/253 (26%), Positives = 91/253 (35%), Gaps = 32/253 (12%)
Query: 5 AALSAPPNERLLPRDPAATRDPDAARPARRSAVERLAADRAKYVRGRPGTGRGVASEGSG 64
A + A LP P T P A+RP S+++ + G GRG +S S
Sbjct: 671 AGIEAQDRRESLPTSPPWT--PGASRPP--SSLDGWVSP------GPWEPGRG-SSMSSP 719
Query: 65 PGAIKCPGNDPGPPARAPAPVARRAIARKPLRPDSLIIYR-------QKCEFVRGSGADG 117
P P P R+ +P+ AR P R ++ R +K R +GA+
Sbjct: 720 PPLPPPPPMSPSWSERSVSPLRPETEARPPSRQLQALLARNIINAARRKSASPRSAGAEN 779
Query: 118 PRASLVKKLFQGPGKDKAPVPRTGDEGKAGNPETVPTTPGPAADPAT-----PETPAPAA 172
PR F P P P + +P+ P PG AA P P +P PA
Sbjct: 780 PRP------FSPPRAPPPPPPPPPPPPRMRSPQ--PARPGSAAVPGAAFAPIPRSPLPAG 831
Query: 173 RSAAPSSVPAAPPGPEPRVVRRRGLQRSQSDLSSRYSAALAESDTFFQYCGLDPEVVEAL 232
S+ S P P P + RR S L S S A + + C L
Sbjct: 832 PSSCTSPRSPLPAPPRPFLYRRSPTD-SDVSLDSEDSGAKSPGILGYNICPRGWNGSLRL 890
Query: 233 GRENFTAGSDCVT 245
R + A + C T
Sbjct: 891 KRGSLPAEASCTT 903
>gi|95147559 ankyrin repeat domain 43 [Homo sapiens]
Length = 549
Score = 45.1 bits (105), Expect = 9e-05
Identities = 36/122 (29%), Positives = 49/122 (40%), Gaps = 24/122 (19%)
Query: 75 PGPPARAPAPVARRAIARKPLRPDSLIIYRQKCEFVRGSGADGPRASLVKKLFQGPGKDK 134
P PP PAP A +P +P S ++ R A P A + ++
Sbjct: 83 PRPPEPEPAPFGPPGAAAQPSKPTSTVLPR---------SASAPGAPPLVRV-------P 126
Query: 135 APVPRTGDEGKAGNPETVPTTPGPAADPATP------ETPAPAARSAAPSSVPAAPPGPE 188
PV GD G P+ P GPA++PA P + P PA A + P+A P
Sbjct: 127 RPVEPPGDLGLPTEPQDTP--GGPASEPAQPPGERSADPPLPALELAQATERPSADAAPP 184
Query: 189 PR 190
PR
Sbjct: 185 PR 186
Score = 36.2 bits (82), Expect = 0.040
Identities = 50/195 (25%), Positives = 70/195 (35%), Gaps = 35/195 (17%)
Query: 10 PPNERLLPRDPAATRDPDAARPAR----RSAVERLAADRAKYVRGRPGTGRGVASEGSGP 65
PP + LP +P T A+ PA+ RSA L A RP
Sbjct: 131 PPGDLGLPTEPQDTPGGPASEPAQPPGERSADPPLPALELAQATERPSADAAPPPRAPSE 190
Query: 66 GAIKC---------PGNDPGPPARAPAPVARRAI---ARKPLRPDSLIIYRQKCEFVRGS 113
A C PG GPP + P + R + A LR + + RQ E
Sbjct: 191 AASPCSDPPDAEPGPGAAKGPPQQKPCMLPVRCVPAPATLRLRAEEPGLRRQLSE----- 245
Query: 114 GADGPRAS--LVKKLF---------QGPGKDK--APVPRTGDEGKAGNPETVPTTPGPAA 160
PR+S L+++L GPG+ + R G + + E +P P P+A
Sbjct: 246 -EPSPRSSPLLLRRLSVEESGLGLGLGPGRSPHLRRLSRAGPRLLSPDAEELPAAPPPSA 304
Query: 161 DPATPETPAPAARSA 175
P P R+A
Sbjct: 305 VPLEPSEHEWLVRTA 319
Score = 33.9 bits (76), Expect = 0.20
Identities = 46/170 (27%), Positives = 62/170 (36%), Gaps = 26/170 (15%)
Query: 57 GVASEGSGPGAIKCP--GNDPGPP--ARAPAPVARRAIARKPLRPDSLI--IYRQKCEFV 110
G A++ S P + P + PG P R P PV P P + +
Sbjct: 97 GAAAQPSKPTSTVLPRSASAPGAPPLVRVPRPVEPPGDLGLPTEPQDTPGGPASEPAQPP 156
Query: 111 RGSGADGPRASL-VKKLFQGPGKDKAPVPRTGDEGKAGNPETVPTTPGPAADPATPETPA 169
AD P +L + + + P D AP PR E + P +DP E P
Sbjct: 157 GERSADPPLPALELAQATERPSADAAPPPRAPSEAAS-----------PCSDPPDAE-PG 204
Query: 170 PAARSAAPSSVPAAPP---GPEPRVVRRR----GLQRSQSDLSSRYSAAL 212
P A P P P P P +R R GL+R S+ S S+ L
Sbjct: 205 PGAAKGPPQQKPCMLPVRCVPAPATLRLRAEEPGLRRQLSEEPSPRSSPL 254
>gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo
sapiens]
Length = 816
Score = 44.7 bits (104), Expect = 1e-04
Identities = 55/207 (26%), Positives = 74/207 (35%), Gaps = 20/207 (9%)
Query: 15 LLPRDPAATRDPDAARPARRSAVERLAADRAKYVRGRPGTGRGVASEGSGPGA-----IK 69
L PR P + R P PA + A K + R G G S P A +
Sbjct: 25 LTPRPPGSPRPPPPVTPAALRVLGAAGAVGRKPLAERAGGIGGATIPESAPRAGPTRTSR 84
Query: 70 CPGNDPG---PPAR--APAPVARRAIARKPLRPDSL----IIYRQKCEFVRGSGADGPRA 120
P + G PPA+ +P PV+ A RP L + + RG + P+
Sbjct: 85 PPASGRGERAPPAKNTSPGPVSSPGRASGTTRPGPLGQKGLRISAEETVARGKATEAPKR 144
Query: 121 SLV----KKLFQGPGKDKAPVPRTGDEGKAGNPETVPTTPGPAADPATP-ETPAPAARSA 175
S + ++ GP P P +A E P P+A P P E P + SA
Sbjct: 145 SALSAGARRDTSGP-TPGTPSPAMARRSRAAGTEVGLPRPAPSARPRPPTEGPRKSVSSA 203
Query: 176 APSSVPAAPPGPEPRVVRRRGLQRSQS 202
+ S P R GLQR S
Sbjct: 204 SEHSTTEPSPAARRRPSAGGGLQRPAS 230
Score = 37.0 bits (84), Expect = 0.023
Identities = 61/227 (26%), Positives = 82/227 (36%), Gaps = 29/227 (12%)
Query: 5 AALSAPPNERL-LPRDPAATR--DPDAARPARRSAVERLAADRAKYVRGRPGTGRGVASE 61
A S PP+ + P P A+ P A P++ A LAA + P AS
Sbjct: 399 APFSPPPSPPVQAPFSPPASPPVSPSATPPSQ--APPSLAAPPLQVPPSPP------ASP 450
Query: 62 GSGPGAIKCPGNDP---GPPARA--PAPVARRAIARKPLR--PDSLIIYRQKCEFVRGSG 114
P A P P PP + P P A A+A PL+ P + + F
Sbjct: 451 PMSPSATPPPQAPPPLAAPPLQLAKPPPQAPPALATPPLQALPSPPASFPGQAPF--SPS 508
Query: 115 ADGPRASLVKKLFQGPGKDKAPVPRTGDEGKAGNPETVPTTPGPAADPATPETPAPAARS 174
A P + L Q P AP+ + P + P +P A P P TP P
Sbjct: 509 ASLPMSPLATPPPQAPPVLAAPLLQV--------PPSPPASPTLQA-PRRPPTPGPDTSV 559
Query: 175 AAPSSVPAAPPGPEPRVVRRRGLQRSQSDLSSRYSAALAESDTFFQY 221
+ P A PGP P R S DL+ S+A + + Y
Sbjct: 560 SGPRLTLALAPGPPPPPSRSPSSTLSGPDLAGHSSSATSTPEELRGY 606
Score = 35.8 bits (81), Expect = 0.052
Identities = 32/115 (27%), Positives = 43/115 (37%), Gaps = 9/115 (7%)
Query: 75 PGPPARAPAPVARRAIARKPLRPDSLIIYRQKCEFVRGSGADGPRASLVKKLFQGPGKDK 134
P P P P A A+A PL+ + P A L L Q P
Sbjct: 346 PLSPLATPPPQAPPALALPPLQAPPSPPASPPLSPLATPSPQAPNA-LAVHLLQAPF--- 401
Query: 135 APVPRTGDEGKAGNPETVPTTPGPAADPATPETPAPAARSAAPSSVPAAPPGPEP 189
+P P + P + P +P ATP + AP + +A P VP +PP P
Sbjct: 402 SPPPSPPVQAPFSPPASPPVSPS-----ATPPSQAPPSLAAPPLQVPPSPPASPP 451
Score = 33.1 bits (74), Expect = 0.34
Identities = 52/194 (26%), Positives = 68/194 (35%), Gaps = 7/194 (3%)
Query: 23 TRDPDAARPARRSAVERLAADRAKYVRGRPGTGRGVASEGSGPGAIKCPGNDPGPPARAP 82
T P AR +R + E A R RP T S S A + +P P AR
Sbjct: 162 TPSPAMARRSRAAGTEVGLPRPAPSARPRPPTEGPRKSVSS---ASEHSTTEPSPAARR- 217
Query: 83 APVARRAIARKPLRPDSLIIYRQKCEFVRGSGADG-PRASLVKKLFQGPGKDKAPVPRTG 141
P A + R R S G A G PRA + G P+
Sbjct: 218 RPSAGGGLQRPASRSLSSSATPLSSPARSGPSARGTPRAPAHPSQPKPKGLQALRPPQVT 277
Query: 142 DEGKAGNPETVPTTPGPAADPATPETPAPAARSAAPS--SVPAAPPGPEPRVVRRRGLQR 199
K P P + P A P+ P+P+A + + S PA PP + LQ
Sbjct: 278 PPRKDAAPALGPLSSSPLATPSPSAPPSPSAPPSLQTLPSPPATPPSQATTSLGSPTLQA 337
Query: 200 SQSDLSSRYSAALA 213
+ S L S + LA
Sbjct: 338 THSFLPSPPLSPLA 351
>gi|239749594 PREDICTED: hypothetical protein XP_002347096 [Homo
sapiens]
Length = 201
Score = 43.5 bits (101), Expect = 3e-04
Identities = 56/191 (29%), Positives = 74/191 (38%), Gaps = 28/191 (14%)
Query: 6 ALSAPPNERLLPRDPAATRDPDAARPARRSAVERLAADRAKYVRGRPGTGRGVASEGSGP 65
A A P+ L R+P T P ++ ARR E++ A VR P T A+E +
Sbjct: 23 AFRAQPSPGLQHRNPLET-PPGPSKAARRGRGEQVRTHLAP-VRVLPNT----AAEATAK 76
Query: 66 GAIKCPGNDPGPPARAPAPVARRAIARKPLRPDSLIIYRQKCEFVRGSGADGPRASLVKK 125
A P AP P AR +PL P S +VRG G +
Sbjct: 77 RA---------PVPSAPLPAARSPRGPQPLSPRS--------SWVRGMPGRGGHQ---RP 116
Query: 126 LFQGPGKDKAPVPRTGDEGKAGNPETVPTTPGPAADPATP--ETPAPAARSAAPSSVPAA 183
LF G P G G+ G P ++ ++ P A PA P E PAA + P+
Sbjct: 117 LFSTLGAGFQPPLGRGGAGRGGAPASLASSARPCAAPALPYRERARPAALHWRTPASPSL 176
Query: 184 PPGPEPRVVRR 194
G R RR
Sbjct: 177 GSGWFRRRARR 187
>gi|116256464 hypothetical protein LOC343990 [Homo sapiens]
Length = 962
Score = 43.5 bits (101), Expect = 3e-04
Identities = 51/193 (26%), Positives = 69/193 (35%), Gaps = 28/193 (14%)
Query: 25 DPDAARPARRSAVERLAADRAKYVRGRPGTGRGVASEGSGPGAIKCPGNDPGPPARAPAP 84
+P A+P R ER D G + + PG +P P A+ PAP
Sbjct: 621 EPQHAKPGPRKLAERGPQDSGDRAASPAGPRKSPQEAAAAPGT-----REPCPAAQEPAP 675
Query: 85 VARRAIARKPLRPDSLII-YRQKC-EFVRGSGADGPRASLVKKLFQGPGKDKAPV----- 137
R LR SL + YR + V+G L + L P ++K P+
Sbjct: 676 SEDRNPFPVKLRSTSLSLKYRDGASQEVKGVKRYSAEVRLERSLTVLPKEEKCPLGTAPA 735
Query: 138 ------PRTGDEGKAGNPETVPTTPGPAADP-----ATPETPAPAARSAAPSSVPAAPPG 186
P +GKA PE + + P P P PAP A P P
Sbjct: 736 LRGTRAPSDQGKGKARPPEPLSSKPPLPRKPLLQSFTLPHQPAPP--DAGPGE---REPR 790
Query: 187 PEPRVVRRRGLQR 199
EPR +R L+R
Sbjct: 791 KEPRTAEKRPLRR 803
Score = 38.9 bits (89), Expect = 0.006
Identities = 43/170 (25%), Positives = 64/170 (37%), Gaps = 38/170 (22%)
Query: 51 RPGTGRGVASEGSGPGAIKCPGNDPGPPARAPAPVARRAIARKPLRPDSLIIYRQKCEFV 110
RP +G+ + GP +PGPPA P P RA R L+ S
Sbjct: 277 RPSSGQQDVAPDRGP--------EPGPPAPLPPPGGARA-RRARLQHSS----------- 316
Query: 111 RGSGADGPRASLVKKLFQG--PGKDKAPVPRTGDEGKAGNPETVPT-TPGPAADPATPET 167
+L + +G PG+D + P T + PE+ PT P + P P
Sbjct: 317 ----------ALTASVEEGGVPGEDPSSRPATPE---LAEPESAPTLRVEPPSPPEGPPN 363
Query: 168 PAPAARSAAPSSVPAAPPGPEPRVVRRRGLQRSQSDLSSRYSAALAESDT 217
P P + PA P P + + + D++S + A+ E DT
Sbjct: 364 PGPDGGKQDGEAPPAGPCA--PATDKAEEVVCAPEDVASPFPTAIPEGDT 411
Score = 36.6 bits (83), Expect = 0.031
Identities = 41/149 (27%), Positives = 49/149 (32%), Gaps = 33/149 (22%)
Query: 51 RPGTGRGVASEGSGPGAIKCPGNDPGPPARAPAPVARRAIARKPLRPDSLIIYRQKCEFV 110
R G R V E P P + GPP AP P R +P
Sbjct: 428 RDGPERSVPKEAE-PTPPVLPDEEKGPPGPAPEP--EREAETEP---------------E 469
Query: 111 RGSGADGPRASLVKKLFQGPGKDKAPV------PRTGDEGKAGNP-----ETVPTTPGPA 159
RG+G + R P AP P EG A +P E+ P PGP
Sbjct: 470 RGAGTEPERIGTEPSTAPAPSPP-APKSCLKHRPAAASEGPAASPPLAAAESPPVEPGPG 528
Query: 160 ---ADPATPETPAPAARSAAPSSVPAAPP 185
A+ A PE P A P+ A P
Sbjct: 529 SLDAEAAAPERPKAERAEAPPAGAERAAP 557
Score = 34.3 bits (77), Expect = 0.15
Identities = 53/206 (25%), Positives = 71/206 (34%), Gaps = 42/206 (20%)
Query: 6 ALSAPPNERLLPRDPAATRDPDAARPARRSAVERLAADRAKYVRGRPGTGRGVASEGSGP 65
A S P + L PAA + AA P LAA + V PG+ A+ P
Sbjct: 488 APSPPAPKSCLKHRPAAASEGPAASPP-------LAAAESPPVEPGPGSLDAEAAAPERP 540
Query: 66 GAIKCPGNDPGPPARAPAPVARRAIARKPLRPDSLIIYRQKCEFVRGSGADGPRASLVKK 125
A + G AP A R A R +F S PR + +
Sbjct: 541 KAERAEAPPAGAERAAPERKAERGGAE----------LRGAKKFSVSSCRARPRPGVSRP 590
Query: 126 LFQGPGKDKAPVPRTGDEGKA--------GNPETVPTTPGP--------------AADPA 163
L + G+ P+ R+G ++ G PE PGP AA PA
Sbjct: 591 LERASGR--LPLARSGPVWRSEAALDDLQGLPEPQHAKPGPRKLAERGPQDSGDRAASPA 648
Query: 164 TPETPAPAARSAAPSSVPAAPPGPEP 189
P +P +AAP + P EP
Sbjct: 649 GPRK-SPQEAAAAPGTREPCPAAQEP 673
Score = 32.3 bits (72), Expect = 0.58
Identities = 48/200 (24%), Positives = 64/200 (32%), Gaps = 53/200 (26%)
Query: 17 PRDPAATRDPDAARPARRSAVERLAADRAKYVRG---------RPGTGRGVASEGSGPGA 67
P PA P AR ARR+ ++ +A A G RP T E +
Sbjct: 293 PGPPAPLPPPGGAR-ARRARLQHSSALTASVEEGGVPGEDPSSRPATPELAEPESAPTLR 351
Query: 68 IKCPGNDPGPPARAPAPVARRAIARKPLRPDSLIIYRQKCEFVRGSGADGPRASLVKKLF 127
++ P GPP P P + P +G P +++
Sbjct: 352 VEPPSPPEGPPN--PGPDGGKQDGEAP-----------------PAGPCAPATDKAEEVV 392
Query: 128 QGPGKDKAPVPRTGDEGKAGNPETVPTTPGPAADPATPETPAPAARSAAPSSVP------ 181
P +P P EG +T P PAA + AP+AR SVP
Sbjct: 393 CAPEDVASPFPTAIPEG-----DTTPPETDPAA-----TSEAPSARDGPERSVPKEAEPT 442
Query: 182 --------AAPPGPEPRVVR 193
PPGP P R
Sbjct: 443 PPVLPDEEKGPPGPAPEPER 462
Score = 31.2 bits (69), Expect = 1.3
Identities = 58/235 (24%), Positives = 82/235 (34%), Gaps = 27/235 (11%)
Query: 5 AALSAPPNERLLPRDPAATRD--PDAARPARRSAVERLAADRAKYVRGRPGTGR-GVASE 61
+AL+A E +P + ++R P+ A P + L + G P G G +
Sbjct: 316 SALTASVEEGGVPGEDPSSRPATPELAEP---ESAPTLRVEPPSPPEGPPNPGPDGGKQD 372
Query: 62 GSGPGAIKC-PGNDPGPPAR-APAPVARRAIARKPLRPDSLIIYRQKCEFVRGSGADGPR 119
G P A C P D AP VA P + S DGP
Sbjct: 373 GEAPPAGPCAPATDKAEEVVCAPEDVASPFPTAIPEGDTTPPETDPAATSEAPSARDGPE 432
Query: 120 ASLVKKLFQGP----GKDK-----APVPRTGDE-----GKAGNPETVPTTPGPAADPATP 165
S+ K+ P ++K AP P E G PE + T P A P+ P
Sbjct: 433 RSVPKEAEPTPPVLPDEEKGPPGPAPEPEREAETEPERGAGTEPERIGTEPSTAPAPSPP 492
Query: 166 ETPA-----PAARSAAPSSVPAAPPGPEPRVVRRRGLQRSQSDLSSRYSAALAES 215
+ PAA S P++ P P V G +++ R A AE+
Sbjct: 493 APKSCLKHRPAAASEGPAASPPLAAAESPPVEPGPGSLDAEAAAPERPKAERAEA 547
>gi|136255216 proline-rich transmembrane protein 3 [Homo sapiens]
Length = 981
Score = 43.5 bits (101), Expect = 3e-04
Identities = 54/200 (27%), Positives = 74/200 (37%), Gaps = 35/200 (17%)
Query: 8 SAPPNERLLPRDPAATRDPDAARPARRSAVERLAADRAKYVRGRPGTGRGVASEGSGPGA 67
S PP E + ++P A PD A E L + K G V+ E S PG
Sbjct: 254 SVPPVEVVYSQEPGA--QPDLALARSLPPAEELPVETPKRA------GAEVSWEVSSPGP 305
Query: 68 IKCPGNDPGPPARAPAPVARRAIARKPLRPDSLIIYRQ--KCEFVRGSGADGPRASLVKK 125
PP +A P A+ + +P P + + K E +GAD V+
Sbjct: 306 ---------PPKQADLPDAKDSPGPQPTDPPASEAPDRPSKPERAAMNGADPISPQRVRG 356
Query: 126 LFQGPGKDKAPVPRTGDEGKAGNPETVP---TTPGPAAD-PATPETPAPAARSAAPSS-- 179
+ PG K+ +P D G A N P P A + P P++ PA APS+
Sbjct: 357 AVEAPGTPKSLIPGPSDPGPAVNRTESPMGALQPDEAEEWPGRPQSHPPAPPVQAPSTSR 416
Query: 180 ----------VPAAPPGPEP 189
PP PEP
Sbjct: 417 RGLIRVTTQRALGQPPPPEP 436
>gi|239754940 PREDICTED: hypothetical protein [Homo sapiens]
Length = 159
Score = 43.1 bits (100), Expect = 3e-04
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Query: 118 PRASLVKKLFQGPGKDKAPVPRTGDEGKAGNPETVPTTPGPAADPATPETPAPAARSAAP 177
P A+ + L + ++P P+ G G +P +P P PA P P+P A P
Sbjct: 64 PAAARLSALAAAQPRRRSPGPQGGGGGDIASP--LPPALQPRGAPAVPAAPSPGPLPARP 121
Query: 178 SSVPAAPPGP 187
SS P +PP P
Sbjct: 122 SSPPPSPPSP 131
Score = 29.6 bits (65), Expect = 3.7
Identities = 44/146 (30%), Positives = 51/146 (34%), Gaps = 19/146 (13%)
Query: 48 VRGRPGTGRGVASEGSGPGAIKCPGND----------PGPPA-RAPAPVARRAIARKPLR 96
VRG G GR V PG PG P P A PAP R A AR L
Sbjct: 14 VRGG-GAGRRVRVGVGEPGGFCLPGPALVVAGLDGIRPAPAAAHPPAPRERPAAAR--LS 70
Query: 97 PDSLIIYRQKCEFVRGSGADGPRASLVKKLFQGPGKDKAPVPRTGDEGKAGNPETVPTTP 156
+ R++ +G G G AS + Q G P + A P+ P
Sbjct: 71 ALAAAQPRRRSPGPQGGGG-GDIASPLPPALQPRGAPAVPAAPSPGPLPARPSSPPPSPP 129
Query: 157 GPAADPATPETPAP----AARSAAPS 178
P A PAP RS APS
Sbjct: 130 SPPVPTAQSSLPAPWPPQGPRSPAPS 155
Score = 28.9 bits (63), Expect = 6.4
Identities = 29/81 (35%), Positives = 32/81 (39%), Gaps = 10/81 (12%)
Query: 20 PAATRDPDAARPARRSAVERLAADRAKYVRGR-PGTGRGVASEGSGPGAIKCPGNDPGPP 78
PAA P P R A RL+A A R R PG +G G G I P P
Sbjct: 52 PAAAHPP---APRERPAAARLSALAAAQPRRRSPGP------QGGGGGDIASPLPPALQP 102
Query: 79 ARAPAPVARRAIARKPLRPDS 99
APA A + P RP S
Sbjct: 103 RGAPAVPAAPSPGPLPARPSS 123
>gi|23238226 CDC42 effector protein 1 [Homo sapiens]
Length = 391
Score = 43.1 bits (100), Expect = 3e-04
Identities = 55/202 (27%), Positives = 77/202 (38%), Gaps = 26/202 (12%)
Query: 1 MRALAALSAPPNERLLPRDPAATRDPDAARPARRSAVERLAADRAKYVRGRPGTGRGVAS 60
++ + + APP P PA + P A P ++A+ ++A Y G +S
Sbjct: 86 LQLVRRVGAPPRRMASP--PAPSPAPPAISPIIKNAISLPQLNQAAYDSLVVGKLSFDSS 143
Query: 61 EGSGPGAIKCPGNDPG-----PPARAPAPVARRAIARKPLRP-----DSLIIYRQKCEFV 110
S G D G R+ P R P P DSL+ +R +
Sbjct: 144 PTSSTDGHSSYGLDSGFCTISRLPRSEKPHDRDRDGSFPSEPGLRRSDSLLSFRLDLDL- 202
Query: 111 RGSGADGPRASLVKKLFQGPGKDKAPVPRTGDEGKAGNPETVPTTP-GPAADP--ATPET 167
GP SL+ +L +AP T A NP P GPAA+P T
Sbjct: 203 ------GP--SLLSELLGVMSLPEAPAAET--PAPAANPPAPTANPTGPAANPPATTANP 252
Query: 168 PAPAARSAAPSSVPAAPPGPEP 189
PAPAA +AP++ P P P
Sbjct: 253 PAPAANPSAPAATPTGPAANPP 274
>gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 855
Score = 42.7 bits (99), Expect = 4e-04
Identities = 56/217 (25%), Positives = 78/217 (35%), Gaps = 31/217 (14%)
Query: 15 LLPRDPAATRDPDAARPARRSAV-------ERLAADRAKYVRG--------RPGTGRGVA 59
L PR P + R P PA + + A+RA + G R G R
Sbjct: 25 LTPRPPGSPRPPPPVTPAALRVLGAAGAVGRKPLAERAGGIGGATIPESAPRAGPTRSAG 84
Query: 60 SEGSGPGAIKCPGNDPG---PPAR--APAPVARRAIARKPLRPDSL----IIYRQKCEFV 110
+ P A + P + G PPA+ +P PV+ A RP L + +
Sbjct: 85 TSSRNP-ASRPPASGRGERAPPAKNTSPGPVSSPGRASGTTRPGPLGQKGLRISAEETVA 143
Query: 111 RGSGADGPRASLV----KKLFQGPGKDKAPVPRTGDEGKAGNPETVPTTPGPAADPATP- 165
RG + P+ S + ++ GP P P +A E P P+A P P
Sbjct: 144 RGKATEAPKRSALSAGARRDTSGP-TPGTPSPAMARRSRAAGTEVGLPRPAPSARPRPPT 202
Query: 166 ETPAPAARSAAPSSVPAAPPGPEPRVVRRRGLQRSQS 202
E P + SA+ S P R GLQR S
Sbjct: 203 EGPRKSVSSASEHSTTEPSPAARRRPSAGGGLQRPAS 239
Score = 38.5 bits (88), Expect = 0.008
Identities = 60/215 (27%), Positives = 82/215 (38%), Gaps = 34/215 (15%)
Query: 17 PRDPAATRDP-DAARPARRSAVERLAADRAKYVRGRPGTGRGVASEGSGP-GAIKCPGND 74
P A R P + R + SA E + + R RP G G+ S + P +
Sbjct: 192 PAPSARPRPPTEGPRKSVSSASEHSTTEPSPAARRRPSAGGGLQRPASRSLSSSATPLSS 251
Query: 75 P---GPPAR----APA-PVARRAIARKPLRPDSLIIYRQKCEFVRGSGADGPRASLVKKL 126
P GP AR APA P + + LRP + R+ G + P A+
Sbjct: 252 PARSGPSARGTPRAPAHPSQPKPKGLQALRPPQVTPPRKDAAPALGPLSSSPLAT----- 306
Query: 127 FQGPGKDKAPVPRTGDEGKAGNPETVPTTPGPAA---DPATPETPAPAARSAAPS----- 178
P P + +A P T+P TP ++ ATP AP + SA PS
Sbjct: 307 ---------PSPSAALQSQA--PPTLPATPHSSSLTCQLATPLPLAPPSPSAPPSLQTLP 355
Query: 179 SVPAAPPGPEPRVVRRRGLQRSQSDLSSRYSAALA 213
S PA PP + LQ + S L S + LA
Sbjct: 356 SPPATPPSQATTSLGSPTLQATHSFLPSPPLSPLA 390
Score = 37.0 bits (84), Expect = 0.023
Identities = 61/227 (26%), Positives = 82/227 (36%), Gaps = 29/227 (12%)
Query: 5 AALSAPPNERL-LPRDPAATR--DPDAARPARRSAVERLAADRAKYVRGRPGTGRGVASE 61
A S PP+ + P P A+ P A P++ A LAA + P AS
Sbjct: 438 APFSPPPSPPVQAPFSPPASPPVSPSATPPSQ--APPSLAAPPLQVPPSPP------ASP 489
Query: 62 GSGPGAIKCPGNDP---GPPARA--PAPVARRAIARKPLR--PDSLIIYRQKCEFVRGSG 114
P A P P PP + P P A A+A PL+ P + + F
Sbjct: 490 PMSPSATPPPQAPPPLAAPPLQLAKPPPQAPPALATPPLQALPSPPASFPGQAPF--SPS 547
Query: 115 ADGPRASLVKKLFQGPGKDKAPVPRTGDEGKAGNPETVPTTPGPAADPATPETPAPAARS 174
A P + L Q P AP+ + P + P +P A P P TP P
Sbjct: 548 ASLPMSPLATPPPQAPPVLAAPLLQV--------PPSPPASPTLQA-PRRPPTPGPDTSV 598
Query: 175 AAPSSVPAAPPGPEPRVVRRRGLQRSQSDLSSRYSAALAESDTFFQY 221
+ P A PGP P R S DL+ S+A + + Y
Sbjct: 599 SGPRLTLALAPGPPPPPSRSPSSTLSGPDLAGHSSSATSTPEELRGY 645
Score = 35.8 bits (81), Expect = 0.052
Identities = 32/115 (27%), Positives = 43/115 (37%), Gaps = 9/115 (7%)
Query: 75 PGPPARAPAPVARRAIARKPLRPDSLIIYRQKCEFVRGSGADGPRASLVKKLFQGPGKDK 134
P P P P A A+A PL+ + P A L L Q P
Sbjct: 385 PLSPLATPPPQAPPALALPPLQAPPSPPASPPLSPLATPSPQAPNA-LAVHLLQAPF--- 440
Query: 135 APVPRTGDEGKAGNPETVPTTPGPAADPATPETPAPAARSAAPSSVPAAPPGPEP 189
+P P + P + P +P ATP + AP + +A P VP +PP P
Sbjct: 441 SPPPSPPVQAPFSPPASPPVSPS-----ATPPSQAPPSLAAPPLQVPPSPPASPP 490
>gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 1124
Score = 42.7 bits (99), Expect = 4e-04
Identities = 56/217 (25%), Positives = 78/217 (35%), Gaps = 31/217 (14%)
Query: 15 LLPRDPAATRDPDAARPARRSAV-------ERLAADRAKYVRG--------RPGTGRGVA 59
L PR P + R P PA + + A+RA + G R G R
Sbjct: 25 LTPRPPGSPRPPPPVTPAALRVLGAAGAVGRKPLAERAGGIGGATIPESAPRAGPTRSAG 84
Query: 60 SEGSGPGAIKCPGNDPG---PPAR--APAPVARRAIARKPLRPDSL----IIYRQKCEFV 110
+ P A + P + G PPA+ +P PV+ A RP L + +
Sbjct: 85 TSSRNP-ASRPPASGRGERAPPAKNTSPGPVSSPGRASGTTRPGPLGQKGLRISAEETVA 143
Query: 111 RGSGADGPRASLV----KKLFQGPGKDKAPVPRTGDEGKAGNPETVPTTPGPAADPATP- 165
RG + P+ S + ++ GP P P +A E P P+A P P
Sbjct: 144 RGKATEAPKRSALSAGARRDTSGP-TPGTPSPAMARRSRAAGTEVGLPRPAPSARPRPPT 202
Query: 166 ETPAPAARSAAPSSVPAAPPGPEPRVVRRRGLQRSQS 202
E P + SA+ S P R GLQR S
Sbjct: 203 EGPRKSVSSASEHSTTEPSPAARRRPSAGGGLQRPAS 239
Score = 39.7 bits (91), Expect = 0.004
Identities = 57/189 (30%), Positives = 74/189 (39%), Gaps = 27/189 (14%)
Query: 17 PRDPAATRDP-DAARPARRSAVERLAADRAKYVRGRPGTGRGVASEGSGP-GAIKCPGND 74
P A R P + R + SA E + + R RP G G+ S + P +
Sbjct: 192 PAPSARPRPPTEGPRKSVSSASEHSTTEPSPAARRRPSAGGGLQRPASRSLSSSATPLSS 251
Query: 75 P---GPPAR----APA-PVARRAIARKPLRPDSLIIYRQKCEFVRGSGADGPRASLVKKL 126
P GP AR APA P + + LRP + R+ G + P A+
Sbjct: 252 PARSGPSARGTPRAPAHPSQPKPKGLQALRPPQVTPPRKDAAPALGPLSSSPLAT----- 306
Query: 127 FQGPGKDKA-PVPRTGDEGKAGNPETVPTTPGPAADPATPETPAPAARSAAPS-----SV 180
P KA PVP + A P +P T P+ ATP AP + SA PS S
Sbjct: 307 -PSPSGTKARPVPPPDN---AATP--LPATLPPSPPLATPLPLAPPSPSAPPSLQTLPSP 360
Query: 181 PAAPPGPEP 189
PA PP P
Sbjct: 361 PATPPSQAP 369
Score = 39.7 bits (91), Expect = 0.004
Identities = 37/124 (29%), Positives = 51/124 (41%), Gaps = 20/124 (16%)
Query: 75 PGPPARAP-APVARRAIARKPLRPDSLIIYRQKCEFVRGSGADGPRASLVKKLFQGPGKD 133
P PPA P +P+A + P P++L ++ + F P + V+ F P
Sbjct: 634 PSPPASPPLSPLATPS----PQAPNALAVHLLQAPF------SPPPSPPVQAPFSPPASP 683
Query: 134 ----KAPVPRTGDEGKAGNPETVPTTPGPAADP----ATPETPAPAARSAAPSSVPAAPP 185
A P A P VP +P PA+ P ATP AP +A P VP +PP
Sbjct: 684 PVSPSATPPSQAPPSLAAPPLQVPPSP-PASPPMSPSATPPPQAPPPLAAPPLQVPPSPP 742
Query: 186 GPEP 189
P
Sbjct: 743 ASPP 746
Score = 38.1 bits (87), Expect = 0.011
Identities = 41/153 (26%), Positives = 56/153 (36%), Gaps = 13/153 (8%)
Query: 71 PGNDPGPPARAPAPVARRAIARKPLR--PDSLIIYRQKCEFVRGSGADGPRASLVKKLFQ 128
P + P P P P A A+A PL+ P + + F A P + L Q
Sbjct: 773 PASLPMSPLAKPPPQAPPALATPPLQALPSPPASFPGQAPF--SPSASLPMSPLATPPPQ 830
Query: 129 GPGKDKAPVPRTGDEGKAGNPETVPTTPGPAADPATPETPAPAARSAAPSSVPAAPPGPE 188
P AP+ + P + P +P A P P TP P + P A PGP
Sbjct: 831 APPVLAAPLLQV--------PPSPPASPTLQA-PRRPPTPGPDTSVSGPRLTLALAPGPP 881
Query: 189 PRVVRRRGLQRSQSDLSSRYSAALAESDTFFQY 221
P R S DL+ S+A + + Y
Sbjct: 882 PPPSRSPSSTLSGPDLAGHSSSATSTPEELRGY 914
Score = 35.0 bits (79), Expect = 0.089
Identities = 50/197 (25%), Positives = 69/197 (35%), Gaps = 21/197 (10%)
Query: 5 AALSAPPNERL--LPRDPAATRDPDAARPARRS----AVERLAADRAKYVRGRPGTGRGV 58
A+L+ PP E L L P T P + A L A + P T +
Sbjct: 528 ASLTTPPLENLPSLAPPPLQTASAPLTTPHLETPPCPAPCPLQAPPSPLTTPPPETPSSI 587
Query: 59 ASEG-SGPGAIKCPG-----NDPGPPARAPAPVARRAIARKPLRPDSLIIYRQKCEFVRG 112
A+ P A+ P + P P P P A +A PL+ +
Sbjct: 588 ATPPPQAPPALASPPLQGLPSPPLSPLATPPPQAPPXLALPPLQAPPSPPASPPLSPLAT 647
Query: 113 SGADGPRASLVKKLFQGPGKDKAPVPRTGDEGKAGNPETVPTTPGPAADPATPETPAPAA 172
P A L L Q P +P P + P + P +P ATP + AP +
Sbjct: 648 PSPQAPNA-LAVHLLQAPF---SPPPSPPVQAPFSPPASPPVSPS-----ATPPSQAPPS 698
Query: 173 RSAAPSSVPAAPPGPEP 189
+A P VP +PP P
Sbjct: 699 LAAPPLQVPPSPPASPP 715
Score = 33.5 bits (75), Expect = 0.26
Identities = 38/147 (25%), Positives = 54/147 (36%), Gaps = 3/147 (2%)
Query: 71 PGNDPGPPARAPAPVARRAIARKPLRPDSLIIYRQKCEFVRGSGADGPRASLVKKLFQGP 130
P + P P P+P A A+A L+ + A P + Q P
Sbjct: 637 PASPPLSPLATPSPQAPNALAVHLLQAPFSPPPSPPVQAPFSPPASPPVSPSATPPSQAP 696
Query: 131 GKDKAPVPRTGDEGKAGNPETVPTTPGPAADP--ATPETPAPAARSAAPSSVPAAPPGPE 188
AP + A P + TP P A P A P P + A+P P+A P P
Sbjct: 697 PSLAAPPLQVPPSPPASPPMSPSATPPPQAPPPLAAPPLQVPPSPPASPPMSPSATPPPR 756
Query: 189 -PRVVRRRGLQRSQSDLSSRYSAALAE 214
P ++ LQ S +S + LA+
Sbjct: 757 VPPLLAAPPLQVPPSPPASLPMSPLAK 783
Score = 31.2 bits (69), Expect = 1.3
Identities = 52/194 (26%), Positives = 64/194 (32%), Gaps = 49/194 (25%)
Query: 3 ALAALSAPPNERLLPR-DPAATRDPDAARPARRSAVERLAADRAKYVRGRPGTGRGVASE 61
AL L APP+ P P AT P A AV L A + P V +
Sbjct: 626 ALPPLQAPPSPPASPPLSPLATPSPQAPNAL---AVHLLQAPFS------PPPSPPVQAP 676
Query: 62 GSGPGAIKCPGNDPG--PPARAPAPVARRAIARKPLRPDSLIIYRQKCEFVRGSGADGPR 119
S P + P P PP++AP +A + P P S
Sbjct: 677 FSPPAS---PPVSPSATPPSQAPPSLAAPPLQVPPSPPAS-------------------- 713
Query: 120 ASLVKKLFQGPGKDKAPVPRTGDEGKAGNPETVPTTPGPAADP----ATPETPAPAARSA 175
P A P A P VP +P PA+ P ATP P +A
Sbjct: 714 ---------PPMSPSATPPPQAPPPLAAPPLQVPPSP-PASPPMSPSATPPPRVPPLLAA 763
Query: 176 APSSVPAAPPGPEP 189
P VP +PP P
Sbjct: 764 PPLQVPPSPPASLP 777
>gi|217416350 cask-interacting protein 2 isoform b [Homo sapiens]
Length = 1120
Score = 42.7 bits (99), Expect = 4e-04
Identities = 54/192 (28%), Positives = 64/192 (33%), Gaps = 22/192 (11%)
Query: 11 PNERLL--PRDPAATRDPDA-ARPARRSAVERLAADRAKYVRGRPGTGRGVASEGSGPGA 67
P R L P P+ P A A PA + E + RG G G A EG+
Sbjct: 820 PRRRTLSEPAGPSEPPGPPAPAGPASDTEEEEPGPEGTPPSRGSSGEGLPFAEEGNL--T 877
Query: 68 IKCPGNDPGPPAR-APAP-------VARRAIARKPLRPDSLIIYRQKCEFVRGSGADGPR 119
IK GPP R P P + R+P + + F S GP
Sbjct: 878 IKQRPKPAGPPPRETPVPPGLDFNLTESDTVKRRPKCREREPLQTALLAFGVASATPGPA 937
Query: 120 ASLVKKL-FQGPGKDKAPVPRTGDEGKAGNPETVPTTPGPAADPATPETPAPAARSAAPS 178
A L + P P P G P P P PA P P P P S+A S
Sbjct: 938 APLPSPTPGESPPASSLPQPEPSSLPAQGVP--TPLAPSPAMQPPVPPCPGPGLESSAAS 995
Query: 179 ------SVPAAP 184
PAAP
Sbjct: 996 RWNGETEPPAAP 1007
Score = 33.5 bits (75), Expect = 0.26
Identities = 49/184 (26%), Positives = 66/184 (35%), Gaps = 28/184 (15%)
Query: 37 VERLAADRAKYVRGRPGTGRGVASEGSGPGAIKCPG--NDPGPPARAP----------AP 84
V+RLA R ++G G GP + G N GP P +P
Sbjct: 534 VKRLAELRRGLLQGE-ALSEGGRRLAKGPELMAIEGLENGEGPATAGPRLLTFQGSELSP 592
Query: 85 VARRAIARKPLRPDSLIIYRQKCEFVRGSGADGPRASLVKKLFQGPGKDKAPVP-RTGDE 143
+ A+A P L R + G+ + G S + Q G D +P R E
Sbjct: 593 ELQAAMAGGGPEPLPLPPARSPSQESIGARSRGSGHSQEQPAPQPSGGDPSPPQERNLPE 652
Query: 144 GKAGNPETVPTTPGPAADP-------ATPETPAPAARSAAP------SSVPAAPPGPEPR 190
G P+ + PG P +P +PAP AP + PA PP P PR
Sbjct: 653 GTERPPKLCSSLPGQGPPPYVFMYPQGSPSSPAPGPPPGAPWAFSYLAGPPATPPDP-PR 711
Query: 191 VVRR 194
RR
Sbjct: 712 PKRR 715
Score = 31.6 bits (70), Expect = 0.99
Identities = 49/178 (27%), Positives = 62/178 (34%), Gaps = 33/178 (18%)
Query: 20 PAATRDPDAARPARRSAVERLAADRAKYVRGRPGTGRGVASEGSGPGAIKCPGNDPGPPA 79
P AT PD RP RRS + RPG G A EG G + G+ G A
Sbjct: 702 PPAT-PPDPPRPKRRS-----------HSLSRPGPTEGDA-EGEAEGPV---GSTLGSYA 745
Query: 80 RAPAPVARRAIARKP--LRPDSLIIYRQKCEFVRGSGADGPRASLVKKLF-------QGP 130
R A+ R + P + F + GP K+L + P
Sbjct: 746 TLTRRPGRSALVRTSPSVTPTPARGTPRSQSFALRARRKGPPPPPPKRLSSVSGPSPEPP 805
Query: 131 GKDKAPVPRTGDEGKAGNPETVPTTPGPAADPATPETPAPAARSAAPSSVPAAPPGPE 188
D++P P+ G G T PA P PAPA + S PGPE
Sbjct: 806 PLDESPGPKEGATGPRRR-----TLSEPAGPSEPPGPPAPAGPA---SDTEEEEPGPE 855
>gi|217416347 cask-interacting protein 2 isoform a [Homo sapiens]
Length = 1202
Score = 42.7 bits (99), Expect = 4e-04
Identities = 54/192 (28%), Positives = 64/192 (33%), Gaps = 22/192 (11%)
Query: 11 PNERLL--PRDPAATRDPDA-ARPARRSAVERLAADRAKYVRGRPGTGRGVASEGSGPGA 67
P R L P P+ P A A PA + E + RG G G A EG+
Sbjct: 902 PRRRTLSEPAGPSEPPGPPAPAGPASDTEEEEPGPEGTPPSRGSSGEGLPFAEEGNL--T 959
Query: 68 IKCPGNDPGPPAR-APAP-------VARRAIARKPLRPDSLIIYRQKCEFVRGSGADGPR 119
IK GPP R P P + R+P + + F S GP
Sbjct: 960 IKQRPKPAGPPPRETPVPPGLDFNLTESDTVKRRPKCREREPLQTALLAFGVASATPGPA 1019
Query: 120 ASLVKKL-FQGPGKDKAPVPRTGDEGKAGNPETVPTTPGPAADPATPETPAPAARSAAPS 178
A L + P P P G P P P PA P P P P S+A S
Sbjct: 1020 APLPSPTPGESPPASSLPQPEPSSLPAQGVP--TPLAPSPAMQPPVPPCPGPGLESSAAS 1077
Query: 179 ------SVPAAP 184
PAAP
Sbjct: 1078 RWNGETEPPAAP 1089
Score = 33.5 bits (75), Expect = 0.26
Identities = 49/184 (26%), Positives = 66/184 (35%), Gaps = 28/184 (15%)
Query: 37 VERLAADRAKYVRGRPGTGRGVASEGSGPGAIKCPG--NDPGPPARAP----------AP 84
V+RLA R ++G G GP + G N GP P +P
Sbjct: 616 VKRLAELRRGLLQGE-ALSEGGRRLAKGPELMAIEGLENGEGPATAGPRLLTFQGSELSP 674
Query: 85 VARRAIARKPLRPDSLIIYRQKCEFVRGSGADGPRASLVKKLFQGPGKDKAPVP-RTGDE 143
+ A+A P L R + G+ + G S + Q G D +P R E
Sbjct: 675 ELQAAMAGGGPEPLPLPPARSPSQESIGARSRGSGHSQEQPAPQPSGGDPSPPQERNLPE 734
Query: 144 GKAGNPETVPTTPGPAADP-------ATPETPAPAARSAAP------SSVPAAPPGPEPR 190
G P+ + PG P +P +PAP AP + PA PP P PR
Sbjct: 735 GTERPPKLCSSLPGQGPPPYVFMYPQGSPSSPAPGPPPGAPWAFSYLAGPPATPPDP-PR 793
Query: 191 VVRR 194
RR
Sbjct: 794 PKRR 797
Score = 31.6 bits (70), Expect = 0.99
Identities = 49/178 (27%), Positives = 62/178 (34%), Gaps = 33/178 (18%)
Query: 20 PAATRDPDAARPARRSAVERLAADRAKYVRGRPGTGRGVASEGSGPGAIKCPGNDPGPPA 79
P AT PD RP RRS + RPG G A EG G + G+ G A
Sbjct: 784 PPAT-PPDPPRPKRRS-----------HSLSRPGPTEGDA-EGEAEGPV---GSTLGSYA 827
Query: 80 RAPAPVARRAIARKP--LRPDSLIIYRQKCEFVRGSGADGPRASLVKKLF-------QGP 130
R A+ R + P + F + GP K+L + P
Sbjct: 828 TLTRRPGRSALVRTSPSVTPTPARGTPRSQSFALRARRKGPPPPPPKRLSSVSGPSPEPP 887
Query: 131 GKDKAPVPRTGDEGKAGNPETVPTTPGPAADPATPETPAPAARSAAPSSVPAAPPGPE 188
D++P P+ G G T PA P PAPA + S PGPE
Sbjct: 888 PLDESPGPKEGATGPRRR-----TLSEPAGPSEPPGPPAPAGPA---SDTEEEEPGPE 937
>gi|117306167 proline-rich protein BstNI subfamily 3 precursor [Homo
sapiens]
Length = 309
Score = 42.7 bits (99), Expect = 4e-04
Identities = 50/183 (27%), Positives = 68/183 (37%), Gaps = 47/183 (25%)
Query: 26 PDAARPARRSAVERLAADRAKYVRGRPGTGRGVASEGSGPGAIKCPGNDPGPP------A 79
P+ RP + +R K GRP G G S+G P PG GPP +
Sbjct: 36 PEGRRPQGGNQPQRTPPPPGK-PEGRPPQG-GNQSQGPPPR----PGKPEGPPPQGGNQS 89
Query: 80 RAPAPVARRAIARKPLRPDSLIIYRQKCEFVRGSGADGPRASLVKKLFQGPGKDKAPVPR 139
+ P P +P +P+ Q + S PR PGK + P P+
Sbjct: 90 QGPPP--------RPGKPEG-----QPPQGGNQSQGPPPR----------PGKPEGPPPQ 126
Query: 140 TGDEGKA-----GNPETVPT-----TPGPAADPATPETPAPAA--RSAAPSSVPAAPPGP 187
G++ + G PE P + GP P PE P P +S P P P GP
Sbjct: 127 GGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPHPGKPEGP 186
Query: 188 EPR 190
P+
Sbjct: 187 PPQ 189
Score = 33.5 bits (75), Expect = 0.26
Identities = 40/149 (26%), Positives = 53/149 (35%), Gaps = 17/149 (11%)
Query: 51 RPGTGRGVASEGSGP--GAIKCPGNDPGPPAR----APAPVARRAIARKPLRPDSLIIYR 104
RPG G +G G PG GPP + + P R KP P +
Sbjct: 158 RPGKPEGPPPQGGNQSQGPPPHPGKPEGPPPQGGNQSQGPPPRPG---KPEGPPPQGGNQ 214
Query: 105 QKCEFVRGSGADGPRASLVKKLFQGP----GKDKAPVPRTGDEGKAGNPETVPTTPGPAA 160
+ R +GP + K QGP GK + P P+ G++ + P P P P
Sbjct: 215 SQGPPPRPGKPEGPPSQGGNKP-QGPPPHPGKPQGPPPQEGNKPQRPPPPGRPQGPPPPG 273
Query: 161 DPATPETPAPAARSAAPSSVPAAPPGPEP 189
P PA + P P P G P
Sbjct: 274 GNPQQPLPPPAGK---PQGPPPPPQGGRP 299
>gi|89941479 hypothetical protein LOC148137 [Homo sapiens]
Length = 425
Score = 42.7 bits (99), Expect = 4e-04
Identities = 41/134 (30%), Positives = 59/134 (44%), Gaps = 18/134 (13%)
Query: 59 ASEGSGPGAIKCPGNDPGPPARAPAPVARRAIARKPLRPDSLIIY----RQKCEFVRGSG 114
+S+G GP A P + A+ P P A ++ PLRP+ I+Y R+K E +GS
Sbjct: 247 SSKGLGPRA---PASPAPAQAQTPTPAPAPASSQAPLRPEDDILYQWRQRRKLEQAQGSK 303
Query: 115 ADG---PRASLVKKLFQGPGKDKAPVPRTGDEGKAGNPETVPTTPGPAADPATPETPAPA 171
D P + + K KA P G + E P +PG P P +PA
Sbjct: 304 GDRAWVPPLTPALRTLAESLKAKALPPAAGSVIR--KSEATP-SPGACLQPEVPLSPAEQ 360
Query: 172 ARSAAPSSVPAAPP 185
A ++V A+PP
Sbjct: 361 A-----TTVKASPP 369
>gi|115527070 alpha 2 type VI collagen isoform 2C2a' precursor [Homo
sapiens]
Length = 828
Score = 42.4 bits (98), Expect = 6e-04
Identities = 51/174 (29%), Positives = 65/174 (37%), Gaps = 23/174 (13%)
Query: 27 DAARPARRSAVERLAADRAKYVRGRPGT--GRGVASEGSGPGAIKCPGNDPG---PPARA 81
D RP RR + A +K +G G GV GPG + P +PG P
Sbjct: 374 DPGRPGRRGPPGEIGAKGSKGYQGNSGAPGSPGVKGAKGGPGP-RGPKGEPGRRGDPGTK 432
Query: 82 PAPVARRAIARK----PLRPDSLI--IYRQKCEFVRG-SGADGPRASLVKKLFQGPGKDK 134
+P + K P P L + + + RG G GP+ +L + PGK
Sbjct: 433 GSPGSDGPKGEKGDPGPEGPRGLAGEVGNKGAKGDRGLPGPRGPQGALGE-----PGKQG 487
Query: 135 APVPRTGDEGKAGNPETVPTTPGPAADPATPETPAPAARSAAPSSVPAAPPGPE 188
+ GD G AG P PGP DP P P R A P GPE
Sbjct: 488 S----RGDPGDAG-PRGDSGQPGPKGDPGRPGFSYPGPRGAPGEKGEPGPRGPE 536
Score = 33.5 bits (75), Expect = 0.26
Identities = 43/145 (29%), Positives = 50/145 (34%), Gaps = 27/145 (18%)
Query: 45 AKYVRGRPGTG--RGVASEGSGPGAIKCPGNDPGPPARAPAPVARRAIARKPLRPDSLII 102
AK RG PG +G E G+ PG D GP + P + P RP
Sbjct: 464 AKGDRGLPGPRGPQGALGEPGKQGSRGDPG-DAGPRGDSGQPGPKG----DPGRP----- 513
Query: 103 YRQKCEFVRGSGADGPRASLVKKLFQGPGKDKAPVPRTGDEGKAGNPETVPTTPGPAADP 162
G GPR + +K GP + P GD G G P G ADP
Sbjct: 514 ---------GFSYPGPRGAPGEKGEPGP---RGPEGGRGDFGLKGEPGR-KGEKGEPADP 560
Query: 163 ATPETPAPAARSAAPSSVPAAPPGP 187
P P P P P PGP
Sbjct: 561 GPPGEPGPRGPRGVPG--PEGEPGP 583
>gi|115527066 alpha 2 type VI collagen isoform 2C2a precursor [Homo
sapiens]
Length = 918
Score = 42.4 bits (98), Expect = 6e-04
Identities = 51/174 (29%), Positives = 65/174 (37%), Gaps = 23/174 (13%)
Query: 27 DAARPARRSAVERLAADRAKYVRGRPGT--GRGVASEGSGPGAIKCPGNDPG---PPARA 81
D RP RR + A +K +G G GV GPG + P +PG P
Sbjct: 374 DPGRPGRRGPPGEIGAKGSKGYQGNSGAPGSPGVKGAKGGPGP-RGPKGEPGRRGDPGTK 432
Query: 82 PAPVARRAIARK----PLRPDSLI--IYRQKCEFVRG-SGADGPRASLVKKLFQGPGKDK 134
+P + K P P L + + + RG G GP+ +L + PGK
Sbjct: 433 GSPGSDGPKGEKGDPGPEGPRGLAGEVGNKGAKGDRGLPGPRGPQGALGE-----PGKQG 487
Query: 135 APVPRTGDEGKAGNPETVPTTPGPAADPATPETPAPAARSAAPSSVPAAPPGPE 188
+ GD G AG P PGP DP P P R A P GPE
Sbjct: 488 S----RGDPGDAG-PRGDSGQPGPKGDPGRPGFSYPGPRGAPGEKGEPGPRGPE 536
Score = 33.5 bits (75), Expect = 0.26
Identities = 43/145 (29%), Positives = 50/145 (34%), Gaps = 27/145 (18%)
Query: 45 AKYVRGRPGTG--RGVASEGSGPGAIKCPGNDPGPPARAPAPVARRAIARKPLRPDSLII 102
AK RG PG +G E G+ PG D GP + P + P RP
Sbjct: 464 AKGDRGLPGPRGPQGALGEPGKQGSRGDPG-DAGPRGDSGQPGPKG----DPGRP----- 513
Query: 103 YRQKCEFVRGSGADGPRASLVKKLFQGPGKDKAPVPRTGDEGKAGNPETVPTTPGPAADP 162
G GPR + +K GP + P GD G G P G ADP
Sbjct: 514 ---------GFSYPGPRGAPGEKGEPGP---RGPEGGRGDFGLKGEPGR-KGEKGEPADP 560
Query: 163 ATPETPAPAARSAAPSSVPAAPPGP 187
P P P P P PGP
Sbjct: 561 GPPGEPGPRGPRGVPG--PEGEPGP 583
>gi|115527062 alpha 2 type VI collagen isoform 2C2 precursor [Homo
sapiens]
Length = 1019
Score = 42.4 bits (98), Expect = 6e-04
Identities = 51/174 (29%), Positives = 65/174 (37%), Gaps = 23/174 (13%)
Query: 27 DAARPARRSAVERLAADRAKYVRGRPGT--GRGVASEGSGPGAIKCPGNDPG---PPARA 81
D RP RR + A +K +G G GV GPG + P +PG P
Sbjct: 374 DPGRPGRRGPPGEIGAKGSKGYQGNSGAPGSPGVKGAKGGPGP-RGPKGEPGRRGDPGTK 432
Query: 82 PAPVARRAIARK----PLRPDSLI--IYRQKCEFVRG-SGADGPRASLVKKLFQGPGKDK 134
+P + K P P L + + + RG G GP+ +L + PGK
Sbjct: 433 GSPGSDGPKGEKGDPGPEGPRGLAGEVGNKGAKGDRGLPGPRGPQGALGE-----PGKQG 487
Query: 135 APVPRTGDEGKAGNPETVPTTPGPAADPATPETPAPAARSAAPSSVPAAPPGPE 188
+ GD G AG P PGP DP P P R A P GPE
Sbjct: 488 S----RGDPGDAG-PRGDSGQPGPKGDPGRPGFSYPGPRGAPGEKGEPGPRGPE 536
Score = 33.5 bits (75), Expect = 0.26
Identities = 43/145 (29%), Positives = 50/145 (34%), Gaps = 27/145 (18%)
Query: 45 AKYVRGRPGTG--RGVASEGSGPGAIKCPGNDPGPPARAPAPVARRAIARKPLRPDSLII 102
AK RG PG +G E G+ PG D GP + P + P RP
Sbjct: 464 AKGDRGLPGPRGPQGALGEPGKQGSRGDPG-DAGPRGDSGQPGPKG----DPGRP----- 513
Query: 103 YRQKCEFVRGSGADGPRASLVKKLFQGPGKDKAPVPRTGDEGKAGNPETVPTTPGPAADP 162
G GPR + +K GP + P GD G G P G ADP
Sbjct: 514 ---------GFSYPGPRGAPGEKGEPGP---RGPEGGRGDFGLKGEPGR-KGEKGEPADP 560
Query: 163 ATPETPAPAARSAAPSSVPAAPPGP 187
P P P P P PGP
Sbjct: 561 GPPGEPGPRGPRGVPG--PEGEPGP 583
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.312 0.130 0.382
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,602,622
Number of Sequences: 37866
Number of extensions: 1060480
Number of successful extensions: 16179
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 392
Number of HSP's successfully gapped in prelim test: 1079
Number of HSP's that attempted gapping in prelim test: 9016
Number of HSP's gapped (non-prelim): 6151
length of query: 321
length of database: 18,247,518
effective HSP length: 102
effective length of query: 219
effective length of database: 14,385,186
effective search space: 3150355734
effective search space used: 3150355734
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.