Guide to the Human Genome
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Name: ANKRD43 Sequence: fasta or formatted (549aa) NCBI GI: 95147559
Description:

ankyrin repeat domain 43

Referenced in:

Ankyrin Family

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.7         75           9
 C cysteine            0.5          3           1
 D aspartate           4.0         22           2
 E glutamate           5.3         29           2
 F phenylalanine       2.4         13           1
 G glycine             9.5         52           3
 H histidine           2.2         12           1
 I isoleucine          0.5          3           1
 K lysine              3.3         18           2
 L leucine            12.0         66           3
 M methionine          1.1          6           1
 N asparagine          0.7          4           2
 P proline            13.7         75           3
 Q glutamine           2.9         16           2
 R arginine            9.3         51           2
 S serine              8.2         45           3
 T threonine           3.6         20           2
 V valine              5.8         32           2
 W tryptophan          0.5          3           1
 Y tyrosine            0.7          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ankyrin repeat domain 43 
ANKRD57               0.146   ankyrin repeat domain 57 
ANKRD56               0.103   ankyrin repeat domain 56 
ANKRD58               0.093   ankyrin repeat domain 58 
MLL2                  0.050   myeloid/lymphoid or mixed-lineage leukemia 2 
FLJ22184              0.046   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.039   PREDICTED: hypothetical protein FLJ22184 
NACA                  0.038   nascent polypeptide-associated complex alpha subuni...
PPP1R13L              0.037   protein phosphatase 1, regulatory subunit 13 like [...
PPP1R13L              0.037   protein phosphatase 1, regulatory subunit 13 like [H...
MYO15A                0.036   myosin XV 
PCLO                  0.036   piccolo isoform 2 
PCLO                  0.036   piccolo isoform 1 
FLJ22184              0.035   PREDICTED: hypothetical protein LOC80164 
SYN1                  0.035   synapsin I isoform Ia 
SYN1                  0.035   synapsin I isoform Ib 
GLTSCR1               0.034   glioma tumor suppressor candidate region gene 1 [Ho...
SF3A2                 0.034   splicing factor 3a, subunit 2 
FMN2                  0.034   formin 2 
DIAPH1                0.033   diaphanous 1 isoform 2 
DIAPH1                0.033   diaphanous 1 isoform 1 
HIC1                  0.033   hypermethylated in cancer 1 isoform 2 
HIC1                  0.033   hypermethylated in cancer 1 isoform 1 
WASF2                 0.033   WAS protein family, member 2 
WBP11                 0.033   WW domain binding protein 11 
CASKIN2               0.032   cask-interacting protein 2 isoform b 
CASKIN2               0.032   cask-interacting protein 2 isoform a 
SFPQ                  0.032   splicing factor proline/glutamine rich (polypyrimidin...
SYDE1                 0.031   synapse defective 1, Rho GTPase, homolog 1 
MUC7                  0.031   mucin 7, secreted precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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