Guide to the Human Genome
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Name: FAM110B Sequence: fasta or formatted (370aa) NCBI GI: 22218339
Description:

hypothetical protein LOC90362

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.4         31           2
 C cysteine            1.4          5           1
 D aspartate           4.6         17           2
 E glutamate           6.8         25           2
 F phenylalanine       2.7         10           2
 G glycine             4.6         17           2
 H histidine           2.7         10           1
 I isoleucine          4.6         17           2
 K lysine              7.0         26           1
 L leucine             7.0         26           2
 M methionine          1.4          5           1
 N asparagine          4.6         17           1
 P proline             8.1         30           2
 Q glutamine           3.5         13           1
 R arginine            7.6         28           2
 S serine             13.8         51           3
 T threonine           2.7         10           1
 V valine              6.2         23           1
 W tryptophan          0.5          2           1
 Y tyrosine            1.9          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC90362 
FAM110A               0.219   hypothetical protein LOC83541 
FAM110A               0.219   hypothetical protein LOC83541 
FAM110A               0.219   hypothetical protein LOC83541 
FAM110C               0.121   hypothetical protein LOC642273 
GRRP1                 0.042   glycine/arginine rich protein 1 
PROX1                 0.024   prospero homeobox 1 
KCNQ5                 0.017   potassium voltage-gated channel, KQT-like subfamily...
KCNQ5                 0.017   potassium voltage-gated channel, KQT-like subfamily...
KCNQ5                 0.017   potassium voltage-gated channel, KQT-like subfamily...
KCNQ5                 0.017   potassium voltage-gated channel, KQT-like subfamily...
KCNQ5                 0.017   potassium voltage-gated channel, KQT-like subfamily,...
TCF12                 0.015   transcription factor 12 isoform c 
TCF12                 0.015   transcription factor 12 isoform b 
TCF12                 0.015   transcription factor 12 isoform b 
MLLT3                 0.014   myeloid/lymphoid or mixed-lineage leukemia (trithor...
NAGS                  0.013   N-acetylglutamate synthase 
C1orf113              0.013   SH3 domain-containing protein C1orf113 isoform 1 [H...
C1orf113              0.013   SH3 domain-containing protein C1orf113 isoform 2 [H...
SETD1A                0.013   SET domain containing 1A 
SRRM2                 0.013   splicing coactivator subunit SRm300 
NKTR                  0.011   natural killer-tumor recognition sequence 
CDKN2AIP              0.011   CDKN2A interacting protein 
RELL1                 0.011   receptor expressed in lymphoid tissues like 1 [Homo...
RELL1                 0.011   receptor expressed in lymphoid tissues like 1 [Homo...
TACC2                 0.011   transforming, acidic coiled-coil containing protein...
GAS2                  0.010   growth arrest-specific 2 
GAS2                  0.010   growth arrest-specific 2 
GAS2                  0.010   growth arrest-specific 2 
ATXN7                 0.010   ataxin 7 isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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