Guide to the Human Genome
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Name: FAM110C Sequence: fasta or formatted (321aa) NCBI GI: 118200352
Description:

hypothetical protein LOC642273

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.4         43           2
 C cysteine            1.6          5           1
 D aspartate           5.0         16           2
 E glutamate           6.2         20           3
 F phenylalanine       1.9          6           2
 G glycine             9.0         29           2
 H histidine           0.3          1           1
 I isoleucine          2.5          8           2
 K lysine              4.7         15           2
 L leucine             5.6         18           2
 M methionine          0.3          1           1
 N asparagine          1.6          5           1
 P proline            11.8         38           2
 Q glutamine           2.8          9           1
 R arginine           11.2         36           3
 S serine              9.0         29           2
 T threonine           5.3         17           2
 V valine              5.9         19           2
 W tryptophan          0.3          1           1
 Y tyrosine            1.6          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC642273 
FAM110A               0.152   hypothetical protein LOC83541 
FAM110A               0.152   hypothetical protein LOC83541 
FAM110A               0.152   hypothetical protein LOC83541 
GRRP1                 0.141   glycine/arginine rich protein 1 
FAM110B               0.139   hypothetical protein LOC90362 
TAF4                  0.042   TBP-associated factor 4 
PCLO                  0.040   piccolo isoform 2 
PCLO                  0.040   piccolo isoform 1 
COL3A1                0.039   collagen type III alpha 1 preproprotein 
LOC100290946          0.036   PREDICTED: hypothetical protein XP_002347121 
LOC100288840          0.036   PREDICTED: hypothetical protein XP_002344246 
ZFPM1                 0.036   zinc finger protein, multitype 1 
SYNPO                 0.034   synaptopodin isoform A 
ANKRD43               0.032   ankyrin repeat domain 43 
FLJ22184              0.032   PREDICTED: hypothetical protein LOC80164 
LOC100289917          0.031   PREDICTED: hypothetical protein XP_002347096 
C2orf55               0.031   hypothetical protein LOC343990 
PRRT3                 0.031   proline-rich transmembrane protein 3 
LOC100131102          0.029   PREDICTED: hypothetical protein 
CDC42EP1              0.029   CDC42 effector protein 1 
FLJ22184              0.029   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.029   PREDICTED: hypothetical protein FLJ22184 
CASKIN2               0.029   cask-interacting protein 2 isoform b 
CASKIN2               0.029   cask-interacting protein 2 isoform a 
PRB3                  0.029   proline-rich protein BstNI subfamily 3 precursor [H...
C19orf55              0.029   hypothetical protein LOC148137 
COL6A2                0.028   alpha 2 type VI collagen isoform 2C2a' precursor [H...
COL6A2                0.028   alpha 2 type VI collagen isoform 2C2a precursor [Ho...
COL6A2                0.028   alpha 2 type VI collagen isoform 2C2 precursor [Hom...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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