Guide to the Human Genome
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Name: LOC100289917 Sequence: fasta or formatted (201aa) NCBI GI: 239749594
Description:

PREDICTED: hypothetical protein XP_002347096

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            15.4         31           2
 C cysteine            2.0          4           2
 D aspartate           0.0          0           0
 E glutamate           3.0          6           1
 F phenylalanine       2.0          4           1
 G glycine            11.9         24           2
 H histidine           2.0          4           1
 I isoleucine          0.0          0           0
 K lysine              2.0          4           1
 L leucine             7.0         14           1
 M methionine          1.0          2           1
 N asparagine          1.5          3           1
 P proline            15.9         32           2
 Q glutamine           4.0          8           1
 R arginine           14.4         29           3
 S serine              9.0         18           2
 T threonine           4.0          8           1
 V valine              2.5          5           1
 W tryptophan          1.5          3           1
 Y tyrosine            1.0          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002347096 
LOC100289547          0.662   PREDICTED: hypothetical protein XP_002342981 
LMTK3                 0.063   lemur tyrosine kinase 3 
LOC100130128          0.061   PREDICTED: hypothetical protein 
LOC100130128          0.061   PREDICTED: hypothetical protein 
LOC100130128          0.061   PREDICTED: hypothetical protein 
ALPK3                 0.058   alpha-kinase 3 
LOC100133885          0.053   PREDICTED: hypothetical protein 
TCEB3B                0.051   elongin A2 
LOC100290691          0.051   PREDICTED: hypothetical protein XP_002347934 
LOC100288156          0.051   PREDICTED: hypothetical protein XP_002344202 
KRTAP4-9              0.048   PREDICTED: keratin associated protein 4-9 
DACT3                 0.048   thymus expressed gene 3-like 
FAM110C               0.048   hypothetical protein LOC642273 
SYNPO                 0.043   synaptopodin isoform A 
TBKBP1                0.043   TBK1 binding protein 1 
SFPQ                  0.043   splicing factor proline/glutamine rich (polypyrimidin...
C2orf55               0.040   hypothetical protein LOC343990 
SYN1                  0.040   synapsin I isoform Ia 
SYN1                  0.040   synapsin I isoform Ib 
LOC100291220          0.038   PREDICTED: hypothetical protein XP_002347633 
LOC100291311          0.038   PREDICTED: hypothetical protein XP_002347439 
LOC100287224          0.038   PREDICTED: hypothetical protein XP_002343483 
LOC100289410          0.038   PREDICTED: hypothetical protein XP_002344274 
LOC100294439          0.038   PREDICTED: similar to Os05g0242100 
KIF26A                0.038   kinesin family member 26A 
LOC729417             0.035   PREDICTED: hypothetical protein 
LOC729417             0.035   PREDICTED: hypothetical protein 
LRRC38                0.035   PREDICTED: leucine rich repeat containing 38 
LOC729417             0.035   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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