Guide to the Human Genome
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Name: FAM110A Sequence: fasta or formatted (295aa) NCBI GI: 13937401
Description:

hypothetical protein LOC83541

Not currently referenced in the text

Other entries for this name:
alt mRNA {295aa} hypothetical protein LOC83541
alt mRNA {295aa} hypothetical protein LOC83541
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.2         36           3
 C cysteine            2.0          6           1
 D aspartate           3.7         11           1
 E glutamate           5.8         17           2
 F phenylalanine       1.7          5           2
 G glycine             7.5         22           2
 H histidine           1.0          3           1
 I isoleucine          1.4          4           1
 K lysine              2.4          7           1
 L leucine             9.2         27           2
 M methionine          0.3          1           1
 N asparagine          1.0          3           1
 P proline            14.2         42           3
 Q glutamine           2.0          6           1
 R arginine           12.5         37           2
 S serine             11.2         33           2
 T threonine           3.4         10           1
 V valine              6.8         20           2
 W tryptophan          0.3          1           1
 Y tyrosine            1.4          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC83541 
FAM110A               1.000   hypothetical protein LOC83541 
FAM110A               1.000   hypothetical protein LOC83541 
FAM110B               0.275   hypothetical protein LOC90362 
FAM110C               0.166   hypothetical protein LOC642273 
GRRP1                 0.141   glycine/arginine rich protein 1 
LOC390595             0.046   PREDICTED: similar to ubiquitin-associated protein ...
LOC390595             0.046   PREDICTED: similar to ubiquitin-associated protein ...
LOC390595             0.046   PREDICTED: hypothetical protein 
LOC729991-MEF2B       0.042   myocyte enhancer factor 2B isoform b 
CASKIN1               0.039   CASK interacting protein 1 
FLJ22184              0.037   PREDICTED: hypothetical protein FLJ22184 
TTBK1                 0.037   tau tubulin kinase 1 
KIAA1522              0.037   hypothetical protein LOC57648 
BSN                   0.037   bassoon protein 
BAI1                  0.035   brain-specific angiogenesis inhibitor 1 precursor [...
TAF4                  0.035   TBP-associated factor 4 
MLL4                  0.035   myeloid/lymphoid or mixed-lineage leukemia 4 
LOC100292088          0.034   PREDICTED: hypothetical protein XP_002346321 
LOC100288963          0.034   PREDICTED: hypothetical protein XP_002342546 
FHDC1                 0.034   FH2 domain containing 1 
DGKK                  0.034   diacylglycerol kinase kappa 
PRR12                 0.034   proline rich 12 
PRG4                  0.034   proteoglycan 4 isoform D 
PRG4                  0.034   proteoglycan 4 isoform C 
PRG4                  0.034   proteoglycan 4 isoform B 
PRG4                  0.034   proteoglycan 4 isoform A 
LOC100130506          0.034   PREDICTED: hypothetical protein 
LOC100288911          0.034   PREDICTED: hypothetical protein XP_002342241 
COL27A1               0.034   collagen, type XXVII, alpha 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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