Guide to the Human Genome
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Name: C19orf55 Sequence: fasta or formatted (425aa) NCBI GI: 89941479
Description:

hypothetical protein LOC148137

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.9         59           3
 C cysteine            0.7          3           1
 D aspartate           3.8         16           2
 E glutamate           4.2         18           2
 F phenylalanine       2.1          9           1
 G glycine             4.9         21           1
 H histidine           1.2          5           1
 I isoleucine          1.9          8           1
 K lysine              3.5         15           1
 L leucine             8.2         35           2
 M methionine          0.5          2           1
 N asparagine          1.4          6           1
 P proline            14.1         60           4
 Q glutamine           6.1         26           1
 R arginine            6.8         29           2
 S serine             15.1         64           5
 T threonine           5.6         24           2
 V valine              3.1         13           2
 W tryptophan          2.1          9           2
 Y tyrosine            0.7          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC148137 
FLJ22184              0.042   PREDICTED: hypothetical protein FLJ22184 
BSN                   0.040   bassoon protein 
SRRM2                 0.040   splicing coactivator subunit SRm300 
SETD1B                0.039   SET domain containing 1B 
NACA                  0.037   nascent polypeptide-associated complex alpha subuni...
TNS1                  0.036   tensin 
KIAA1522              0.036   hypothetical protein LOC57648 
TTBK1                 0.036   tau tubulin kinase 1 
TAF4                  0.035   TBP-associated factor 4 
FSCB                  0.035   fibrous sheath CABYR binding protein 
MUC2                  0.034   mucin 2 precursor 
ARID1A                0.033   AT rich interactive domain 1A isoform a 
ARID1A                0.033   AT rich interactive domain 1A isoform b 
MUC17                 0.031   mucin 17 
SPEG                  0.031   SPEG complex locus 
GLTSCR1               0.031   glioma tumor suppressor candidate region gene 1 [Ho...
C6orf132              0.030   PREDICTED: chromosome 6 open reading frame 132 [Hom...
C6orf132              0.030   PREDICTED: chromosome 6 open reading frame 132 [Hom...
C6orf132              0.030   PREDICTED: hypothetical protein LOC647024 
KIAA0754              0.030   hypothetical protein LOC643314 
LDB3                  0.030   LIM domain binding 3 isoform 1 
NUP214                0.029   nucleoporin 214kDa 
PRG4                  0.029   proteoglycan 4 isoform D 
PRG4                  0.029   proteoglycan 4 isoform C 
PRG4                  0.029   proteoglycan 4 isoform B 
PRG4                  0.029   proteoglycan 4 isoform A 
TNRC18                0.028   trinucleotide repeat containing 18 
SRCAP                 0.028   Snf2-related CBP activator protein 
PPP1R13L              0.028   protein phosphatase 1, regulatory subunit 13 like [...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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