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Search of human proteins with 239751657
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239751657 PREDICTED: hypothetical protein XP_002347944 [Homo
sapiens]
(72 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239757149 PREDICTED: hypothetical protein [Homo sapiens] 156 3e-39
gi|239751657 PREDICTED: hypothetical protein XP_002347944 [Homo ... 156 3e-39
gi|239746163 PREDICTED: hypothetical protein XP_002343666 [Homo ... 156 3e-39
gi|148536825 alpha 1 type IV collagen preproprotein [Homo sapiens] 33 0.037
gi|14210490 LGP1 homolog isoform 1 [Homo sapiens] 32 0.082
gi|217330596 LGP1 homolog isoform 3 [Homo sapiens] 32 0.082
gi|217330592 LGP1 homolog isoform 2 [Homo sapiens] 32 0.082
gi|87196339 collagen, type VI, alpha 1 precursor [Homo sapiens] 32 0.11
gi|55743106 alpha 3 type VI collagen isoform 5 precursor [Homo s... 32 0.14
gi|55743098 alpha 3 type VI collagen isoform 1 precursor [Homo s... 32 0.14
gi|240255535 alpha 3 type VI collagen isoform 4 precursor [Homo ... 32 0.14
gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens] 32 0.14
gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein ... 32 0.14
gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein ... 32 0.14
gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein ... 32 0.14
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho... 31 0.18
gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Ho... 31 0.18
gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Ho... 31 0.18
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens] 31 0.18
gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Ho... 31 0.18
gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Ho... 31 0.18
gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Ho... 31 0.18
gi|38150007 small nuclear ribonucleoprotein polypeptide B/B' iso... 31 0.18
gi|4507125 small nuclear ribonucleoprotein polypeptide B/B' isof... 31 0.18
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 31 0.24
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 31 0.24
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 31 0.24
gi|239753493 PREDICTED: hypothetical protein [Homo sapiens] 31 0.24
gi|239748056 PREDICTED: hypothetical protein XP_002346522 [Homo ... 31 0.24
gi|239741949 PREDICTED: hypothetical protein XP_002342360 [Homo ... 31 0.24
>gi|239757149 PREDICTED: hypothetical protein [Homo sapiens]
Length = 72
Score = 156 bits (395), Expect = 3e-39
Identities = 72/72 (100%), Positives = 72/72 (100%)
Query: 1 MILPWPPHNLGRRGAAGTALPRGLRTEAAVAAQGRLRMPGVPAAGPAPPCGRGDPGTSCA 60
MILPWPPHNLGRRGAAGTALPRGLRTEAAVAAQGRLRMPGVPAAGPAPPCGRGDPGTSCA
Sbjct: 1 MILPWPPHNLGRRGAAGTALPRGLRTEAAVAAQGRLRMPGVPAAGPAPPCGRGDPGTSCA 60
Query: 61 RETRVRRPRNRC 72
RETRVRRPRNRC
Sbjct: 61 RETRVRRPRNRC 72
>gi|239751657 PREDICTED: hypothetical protein XP_002347944 [Homo
sapiens]
Length = 72
Score = 156 bits (395), Expect = 3e-39
Identities = 72/72 (100%), Positives = 72/72 (100%)
Query: 1 MILPWPPHNLGRRGAAGTALPRGLRTEAAVAAQGRLRMPGVPAAGPAPPCGRGDPGTSCA 60
MILPWPPHNLGRRGAAGTALPRGLRTEAAVAAQGRLRMPGVPAAGPAPPCGRGDPGTSCA
Sbjct: 1 MILPWPPHNLGRRGAAGTALPRGLRTEAAVAAQGRLRMPGVPAAGPAPPCGRGDPGTSCA 60
Query: 61 RETRVRRPRNRC 72
RETRVRRPRNRC
Sbjct: 61 RETRVRRPRNRC 72
>gi|239746163 PREDICTED: hypothetical protein XP_002343666 [Homo
sapiens]
Length = 72
Score = 156 bits (395), Expect = 3e-39
Identities = 72/72 (100%), Positives = 72/72 (100%)
Query: 1 MILPWPPHNLGRRGAAGTALPRGLRTEAAVAAQGRLRMPGVPAAGPAPPCGRGDPGTSCA 60
MILPWPPHNLGRRGAAGTALPRGLRTEAAVAAQGRLRMPGVPAAGPAPPCGRGDPGTSCA
Sbjct: 1 MILPWPPHNLGRRGAAGTALPRGLRTEAAVAAQGRLRMPGVPAAGPAPPCGRGDPGTSCA 60
Query: 61 RETRVRRPRNRC 72
RETRVRRPRNRC
Sbjct: 61 RETRVRRPRNRC 72
>gi|148536825 alpha 1 type IV collagen preproprotein [Homo sapiens]
Length = 1669
Score = 33.5 bits (75), Expect = 0.037
Identities = 21/53 (39%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
Query: 11 GRRGAAGTALPRGLRTEAAVAA-QGRLRMPGVPAAGP----APPCGRGDPGTS 58
G GA G +G+R E G + PGVP GP PP G+G PG S
Sbjct: 767 GEHGAIGPPGLQGIRGEPGPPGLPGSVGSPGVPGIGPPGARGPPGGQGPPGLS 819
Score = 27.7 bits (60), Expect = 2.0
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Query: 11 GRRGAAGTALPRGLRTEAAVAAQGRLRMPGVPAAGPAPPCGRGDPG 56
G RG G P G + +G+ PG P + P P +G+PG
Sbjct: 595 GSRGDTGPPGPPGYGPAGPIGDKGQAGFPGGPGS-PGLPGPKGEPG 639
>gi|14210490 LGP1 homolog isoform 1 [Homo sapiens]
Length = 530
Score = 32.3 bits (72), Expect = 0.082
Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 7/41 (17%)
Query: 3 LPWPPHNLGRRGAAGTALPRGLRTEAAVAAQGRLRMPGVPA 43
LPWP + LG+ G GT PR L +A LR PG+ A
Sbjct: 164 LPWPGNTLGQVGTPGTKDPRALLLDA-------LRSPGLRA 197
>gi|217330596 LGP1 homolog isoform 3 [Homo sapiens]
Length = 474
Score = 32.3 bits (72), Expect = 0.082
Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 7/41 (17%)
Query: 3 LPWPPHNLGRRGAAGTALPRGLRTEAAVAAQGRLRMPGVPA 43
LPWP + LG+ G GT PR L +A LR PG+ A
Sbjct: 164 LPWPGNTLGQVGTPGTKDPRALLLDA-------LRSPGLRA 197
>gi|217330592 LGP1 homolog isoform 2 [Homo sapiens]
Length = 491
Score = 32.3 bits (72), Expect = 0.082
Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 7/41 (17%)
Query: 3 LPWPPHNLGRRGAAGTALPRGLRTEAAVAAQGRLRMPGVPA 43
LPWP + LG+ G GT PR L +A LR PG+ A
Sbjct: 125 LPWPGNTLGQVGTPGTKDPRALLLDA-------LRSPGLRA 158
>gi|87196339 collagen, type VI, alpha 1 precursor [Homo sapiens]
Length = 1028
Score = 32.0 bits (71), Expect = 0.11
Identities = 29/64 (45%), Positives = 30/64 (46%), Gaps = 9/64 (14%)
Query: 7 PHNLGRRGAAGTALPRGLRTEAAVAA-QGRLRMPGVPA----AGPAPPCG-RGD---PGT 57
P G RG GT PRG EA QGR GVP AGP P G RGD PG+
Sbjct: 427 PGERGPRGTPGTRGPRGDPGEAGPQGDQGREGPVGVPGDPGEAGPIGPKGYRGDEGPPGS 486
Query: 58 SCAR 61
AR
Sbjct: 487 EGAR 490
Score = 28.5 bits (62), Expect = 1.2
Identities = 22/57 (38%), Positives = 23/57 (40%), Gaps = 10/57 (17%)
Query: 6 PPHNLGRRGAAGTALP------RGLRTEAAVAAQGRLRMPGVPAAGPAPPCGRGDPG 56
PP + G RGA G A P G R E A G PG P P RG PG
Sbjct: 483 PPGSEGARGAPGPAGPPGDPGLMGERGEDGPAGNGTEGFPGFPGY----PGNRGAPG 535
>gi|55743106 alpha 3 type VI collagen isoform 5 precursor [Homo
sapiens]
Length = 2971
Score = 31.6 bits (70), Expect = 0.14
Identities = 24/62 (38%), Positives = 27/62 (43%), Gaps = 7/62 (11%)
Query: 4 PWPPHNLGRRGAAGTALPRGLR----TEAAVAAQGRLRMPGVPAAGPAPPCG-RGDPGTS 58
P P N G G GT P+G+R G+ PG P GPA P G RGD
Sbjct: 2113 PGPKGNPGEPGLNGTTGPKGIRGRRGNSGPPGIVGQKGDPGYP--GPAGPKGNRGDSIDQ 2170
Query: 59 CA 60
CA
Sbjct: 2171 CA 2172
>gi|55743098 alpha 3 type VI collagen isoform 1 precursor [Homo
sapiens]
Length = 3177
Score = 31.6 bits (70), Expect = 0.14
Identities = 24/62 (38%), Positives = 27/62 (43%), Gaps = 7/62 (11%)
Query: 4 PWPPHNLGRRGAAGTALPRGLR----TEAAVAAQGRLRMPGVPAAGPAPPCG-RGDPGTS 58
P P N G G GT P+G+R G+ PG P GPA P G RGD
Sbjct: 2319 PGPKGNPGEPGLNGTTGPKGIRGRRGNSGPPGIVGQKGDPGYP--GPAGPKGNRGDSIDQ 2376
Query: 59 CA 60
CA
Sbjct: 2377 CA 2378
>gi|240255535 alpha 3 type VI collagen isoform 4 precursor [Homo
sapiens]
Length = 2570
Score = 31.6 bits (70), Expect = 0.14
Identities = 24/62 (38%), Positives = 27/62 (43%), Gaps = 7/62 (11%)
Query: 4 PWPPHNLGRRGAAGTALPRGLR----TEAAVAAQGRLRMPGVPAAGPAPPCG-RGDPGTS 58
P P N G G GT P+G+R G+ PG P GPA P G RGD
Sbjct: 1712 PGPKGNPGEPGLNGTTGPKGIRGRRGNSGPPGIVGQKGDPGYP--GPAGPKGNRGDSIDQ 1769
Query: 59 CA 60
CA
Sbjct: 1770 CA 1771
>gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens]
Length = 703
Score = 31.6 bits (70), Expect = 0.14
Identities = 23/64 (35%), Positives = 27/64 (42%), Gaps = 13/64 (20%)
Query: 3 LPWPPHNLGRRGAAGTALP---RGLRTEAAVAAQGRLRMPGVPAAGPAP-------PCGR 52
+P PP G G G P RGL+ + V G +PG P G AP P G
Sbjct: 180 VPGPPGFQGEPGPQGEPGPPGDRGLKGDNGVGQPG---LPGAPGQGGAPGPPGLPGPAGL 236
Query: 53 GDPG 56
G PG
Sbjct: 237 GKPG 240
Score = 28.1 bits (61), Expect = 1.5
Identities = 18/53 (33%), Positives = 21/53 (39%), Gaps = 2/53 (3%)
Query: 6 PPHNLGRRGAAGTALPRGLRTEAAVAAQGRLRMPGV--PAAGPAPPCGRGDPG 56
PP G RG G P+G V G +PG P+ P RG PG
Sbjct: 256 PPGVPGPRGEPGAVGPKGPPGVDGVGVPGAAGLPGPQGPSGAKGEPGTRGPPG 308
Score = 26.9 bits (58), Expect = 3.4
Identities = 17/51 (33%), Positives = 21/51 (41%), Gaps = 5/51 (9%)
Query: 11 GRRGAAGTALPRGLRTEAAVAAQGRLRMPGVP-----AAGPAPPCGRGDPG 56
G G G P GL A + G +PG P + P P RG+PG
Sbjct: 217 GAPGQGGAPGPPGLPGPAGLGKPGLDGLPGAPGDKGESGPPGVPGPRGEPG 267
>gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein
[Homo sapiens]
Length = 1650
Score = 31.6 bits (70), Expect = 0.14
Identities = 23/54 (42%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Query: 3 LPWPPHNLGRRGAAGTALPRGLRTEAAVAAQGRLRMPGVPAAGPAPPCGRGDPG 56
LP PP G RG G PRGL E+ +G L G P P PP RG G
Sbjct: 495 LPGPPGEDGERGDDGEIGPRGLPGES--GPRGLLGPKGPPGI-PGPPGVRGMDG 545
Score = 29.3 bits (64), Expect = 0.69
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 6 PPHNLGRRGAAGTALPRGLR-TEAAVAAQGRLRMPG-VPAAGPAPPCGRGDP 55
PP LG+RG AG+ G + + A G + PG GPA P G+ P
Sbjct: 1227 PPGPLGKRGPAGSPGSEGRQGGKGAKGDPGAIGAPGKTGPVGPAGPAGKPGP 1278
Score = 27.7 bits (60), Expect = 2.0
Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
Query: 3 LPWPPHNLGRRGAAGTALPRGLRTEAAVAAQGRLRMPGVPAAGPAPPCGRGDPG 56
L PP GRRG AG RG+ + V +G G+P P RGD G
Sbjct: 441 LTGPPGKAGRRGRAGADGARGMPGDPGV--KGDRGFDGLPGL-PGEKGHRGDTG 491
Score = 27.7 bits (60), Expect = 2.0
Identities = 21/61 (34%), Positives = 26/61 (42%), Gaps = 15/61 (24%)
Query: 4 PWPPHNLGRRGAAGTALPRGLRTEAAVAAQGRLRMPGVPAAGPAPPCGRGDPGTSCARET 63
P PP +G +GAAG P G R PG P PP +G PGT+ T
Sbjct: 835 PGPPGVVGPQGAAGETGPMGERGH-----------PG----PPGPPGEQGLPGTAGKEGT 879
Query: 64 R 64
+
Sbjct: 880 K 880
>gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein
[Homo sapiens]
Length = 1629
Score = 31.6 bits (70), Expect = 0.14
Identities = 23/54 (42%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Query: 3 LPWPPHNLGRRGAAGTALPRGLRTEAAVAAQGRLRMPGVPAAGPAPPCGRGDPG 56
LP PP G RG G PRGL E+ +G L G P P PP RG G
Sbjct: 474 LPGPPGEDGERGDDGEIGPRGLPGES--GPRGLLGPKGPPGI-PGPPGVRGMDG 524
Score = 29.3 bits (64), Expect = 0.69
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 6 PPHNLGRRGAAGTALPRGLR-TEAAVAAQGRLRMPG-VPAAGPAPPCGRGDP 55
PP LG+RG AG+ G + + A G + PG GPA P G+ P
Sbjct: 1206 PPGPLGKRGPAGSPGSEGRQGGKGAKGDPGAIGAPGKTGPVGPAGPAGKPGP 1257
Score = 27.7 bits (60), Expect = 2.0
Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
Query: 3 LPWPPHNLGRRGAAGTALPRGLRTEAAVAAQGRLRMPGVPAAGPAPPCGRGDPG 56
L PP GRRG AG RG+ + V +G G+P P RGD G
Sbjct: 420 LTGPPGKAGRRGRAGADGARGMPGDPGV--KGDRGFDGLPGL-PGEKGHRGDTG 470
Score = 27.7 bits (60), Expect = 2.0
Identities = 21/61 (34%), Positives = 26/61 (42%), Gaps = 15/61 (24%)
Query: 4 PWPPHNLGRRGAAGTALPRGLRTEAAVAAQGRLRMPGVPAAGPAPPCGRGDPGTSCARET 63
P PP +G +GAAG P G R PG P PP +G PGT+ T
Sbjct: 814 PGPPGVVGPQGAAGETGPMGERGH-----------PG----PPGPPGEQGLPGTAGKEGT 858
Query: 64 R 64
+
Sbjct: 859 K 859
>gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein
[Homo sapiens]
Length = 1736
Score = 31.6 bits (70), Expect = 0.14
Identities = 23/54 (42%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Query: 3 LPWPPHNLGRRGAAGTALPRGLRTEAAVAAQGRLRMPGVPAAGPAPPCGRGDPG 56
LP PP G RG G PRGL E+ +G L G P P PP RG G
Sbjct: 581 LPGPPGEDGERGDDGEIGPRGLPGES--GPRGLLGPKGPPGI-PGPPGVRGMDG 631
Score = 29.3 bits (64), Expect = 0.69
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 6 PPHNLGRRGAAGTALPRGLR-TEAAVAAQGRLRMPG-VPAAGPAPPCGRGDP 55
PP LG+RG AG+ G + + A G + PG GPA P G+ P
Sbjct: 1313 PPGPLGKRGPAGSPGSEGRQGGKGAKGDPGAIGAPGKTGPVGPAGPAGKPGP 1364
Score = 27.7 bits (60), Expect = 2.0
Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
Query: 3 LPWPPHNLGRRGAAGTALPRGLRTEAAVAAQGRLRMPGVPAAGPAPPCGRGDPG 56
L PP GRRG AG RG+ + V +G G+P P RGD G
Sbjct: 527 LTGPPGKAGRRGRAGADGARGMPGDPGV--KGDRGFDGLPGL-PGEKGHRGDTG 577
Score = 27.7 bits (60), Expect = 2.0
Identities = 21/61 (34%), Positives = 26/61 (42%), Gaps = 15/61 (24%)
Query: 4 PWPPHNLGRRGAAGTALPRGLRTEAAVAAQGRLRMPGVPAAGPAPPCGRGDPGTSCARET 63
P PP +G +GAAG P G R PG P PP +G PGT+ T
Sbjct: 921 PGPPGVVGPQGAAGETGPMGERGH-----------PG----PPGPPGEQGLPGTAGKEGT 965
Query: 64 R 64
+
Sbjct: 966 K 966
>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
sapiens]
Length = 1818
Score = 31.2 bits (69), Expect = 0.18
Identities = 25/74 (33%), Positives = 29/74 (39%), Gaps = 21/74 (28%)
Query: 4 PWPPHNLGRRGAAGTALPRGLRTEA----------AVAAQGRLRMPGV-----------P 42
P PP + G RG G PRGL EA A G+ M GV P
Sbjct: 636 PGPPGDDGMRGEDGEIGPRGLPGEAGPRGLLGPRGTPGAPGQPGMAGVDGPPGPKGNMGP 695
Query: 43 AAGPAPPCGRGDPG 56
P PP +G+PG
Sbjct: 696 QGEPGPPGQQGNPG 709
Score = 28.5 bits (62), Expect = 1.2
Identities = 22/53 (41%), Positives = 25/53 (47%), Gaps = 12/53 (22%)
Query: 4 PWPPHNLGRRGAAGTALPRGLRTEAAVAAQGRLRMPGVPAAGPAPPCGRGDPG 56
P P + G RG+AGTA P GL GR PG P P P +G PG
Sbjct: 1065 PGPVGSPGERGSAGTAGPIGL--------PGR---PG-PQGPPGPAGEKGAPG 1105
Score = 26.9 bits (58), Expect = 3.4
Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
Query: 6 PPHNLGRRGAAGTALPRGLRTEAAVAAQGRLRMPGVPAAGPAPPCGRGDPG 56
PP G +GA G P+G V QG + +PG PA P GD G
Sbjct: 1094 PPGPAGEKGAPGEKGPQGPAGRDGV--QGPVGLPG-PAGPAGSPGEDGDKG 1141
Score = 25.8 bits (55), Expect = 7.7
Identities = 21/53 (39%), Positives = 24/53 (45%), Gaps = 9/53 (16%)
Query: 4 PWPPHNLGRRGAAGTALPRGLRTEAAVAAQGRLRMPGVPAAGPAPPCGRGDPG 56
P N G G AG P+G R E +G PG AAG PP +G PG
Sbjct: 1269 PGEAGNPGPPGEAGVGGPKGERGE-----KGEAGPPG--AAG--PPGAKGPPG 1312
>gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Homo
sapiens]
Length = 1767
Score = 31.2 bits (69), Expect = 0.18
Identities = 25/74 (33%), Positives = 29/74 (39%), Gaps = 21/74 (28%)
Query: 4 PWPPHNLGRRGAAGTALPRGLRTEA----------AVAAQGRLRMPGV-----------P 42
P PP + G RG G PRGL EA A G+ M GV P
Sbjct: 585 PGPPGDDGMRGEDGEIGPRGLPGEAGPRGLLGPRGTPGAPGQPGMAGVDGPPGPKGNMGP 644
Query: 43 AAGPAPPCGRGDPG 56
P PP +G+PG
Sbjct: 645 QGEPGPPGQQGNPG 658
Score = 28.5 bits (62), Expect = 1.2
Identities = 22/53 (41%), Positives = 25/53 (47%), Gaps = 12/53 (22%)
Query: 4 PWPPHNLGRRGAAGTALPRGLRTEAAVAAQGRLRMPGVPAAGPAPPCGRGDPG 56
P P + G RG+AGTA P GL GR PG P P P +G PG
Sbjct: 1014 PGPVGSPGERGSAGTAGPIGL--------PGR---PG-PQGPPGPAGEKGAPG 1054
Score = 26.9 bits (58), Expect = 3.4
Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
Query: 6 PPHNLGRRGAAGTALPRGLRTEAAVAAQGRLRMPGVPAAGPAPPCGRGDPG 56
PP G +GA G P+G V QG + +PG PA P GD G
Sbjct: 1043 PPGPAGEKGAPGEKGPQGPAGRDGV--QGPVGLPG-PAGPAGSPGEDGDKG 1090
Score = 25.8 bits (55), Expect = 7.7
Identities = 21/53 (39%), Positives = 24/53 (45%), Gaps = 9/53 (16%)
Query: 4 PWPPHNLGRRGAAGTALPRGLRTEAAVAAQGRLRMPGVPAAGPAPPCGRGDPG 56
P N G G AG P+G R E +G PG AAG PP +G PG
Sbjct: 1218 PGEAGNPGPPGEAGVGGPKGERGE-----KGEAGPPG--AAG--PPGAKGPPG 1261
>gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Homo
sapiens]
Length = 1806
Score = 31.2 bits (69), Expect = 0.18
Identities = 25/74 (33%), Positives = 29/74 (39%), Gaps = 21/74 (28%)
Query: 4 PWPPHNLGRRGAAGTALPRGLRTEA----------AVAAQGRLRMPGV-----------P 42
P PP + G RG G PRGL EA A G+ M GV P
Sbjct: 624 PGPPGDDGMRGEDGEIGPRGLPGEAGPRGLLGPRGTPGAPGQPGMAGVDGPPGPKGNMGP 683
Query: 43 AAGPAPPCGRGDPG 56
P PP +G+PG
Sbjct: 684 QGEPGPPGQQGNPG 697
Score = 28.5 bits (62), Expect = 1.2
Identities = 22/53 (41%), Positives = 25/53 (47%), Gaps = 12/53 (22%)
Query: 4 PWPPHNLGRRGAAGTALPRGLRTEAAVAAQGRLRMPGVPAAGPAPPCGRGDPG 56
P P + G RG+AGTA P GL GR PG P P P +G PG
Sbjct: 1053 PGPVGSPGERGSAGTAGPIGL--------PGR---PG-PQGPPGPAGEKGAPG 1093
Score = 26.9 bits (58), Expect = 3.4
Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
Query: 6 PPHNLGRRGAAGTALPRGLRTEAAVAAQGRLRMPGVPAAGPAPPCGRGDPG 56
PP G +GA G P+G V QG + +PG PA P GD G
Sbjct: 1082 PPGPAGEKGAPGEKGPQGPAGRDGV--QGPVGLPG-PAGPAGSPGEDGDKG 1129
Score = 25.8 bits (55), Expect = 7.7
Identities = 21/53 (39%), Positives = 24/53 (45%), Gaps = 9/53 (16%)
Query: 4 PWPPHNLGRRGAAGTALPRGLRTEAAVAAQGRLRMPGVPAAGPAPPCGRGDPG 56
P N G G AG P+G R E +G PG AAG PP +G PG
Sbjct: 1257 PGEAGNPGPPGEAGVGGPKGERGE-----KGEAGPPG--AAG--PPGAKGPPG 1300
>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
Length = 2944
Score = 31.2 bits (69), Expect = 0.18
Identities = 20/68 (29%), Positives = 27/68 (39%), Gaps = 5/68 (7%)
Query: 4 PWPPHNLGRRGAAGTALPRGLRTEAAVAAQGRLRMPGVPA-----AGPAPPCGRGDPGTS 58
P PP ++G RG G +G R G +PG P P P RG+ G +
Sbjct: 2724 PGPPGSVGPRGPEGLQGQKGERGPPGERVVGAPGVPGAPGERGEQGRPGPAGPRGEKGEA 2783
Query: 59 CARETRVR 66
E +R
Sbjct: 2784 ALTEDDIR 2791
Score = 29.3 bits (64), Expect = 0.69
Identities = 21/52 (40%), Positives = 22/52 (42%), Gaps = 3/52 (5%)
Query: 7 PHNLGRRGAAGTALPRGLRTEAAVAAQGRLRMPGVPAAGPAPPCGRGDPGTS 58
P G RG G P G R A GR +PG P P PP G PG S
Sbjct: 2406 PGQTGPRGEMGQPGPSGERGLAG--PPGREGIPG-PLGPPGPPGSVGPPGAS 2454
Score = 27.7 bits (60), Expect = 2.0
Identities = 21/60 (35%), Positives = 25/60 (41%), Gaps = 7/60 (11%)
Query: 4 PWPPHNLGRRGAAGTALPRGLRTEAAVAAQGRLRMPGVPAA-----GPAPPCGRGDPGTS 58
P P G +G+ G PRG E +G PG P GP P +GDPG S
Sbjct: 1316 PGTPGAPGLKGSPGLPGPRGDPGERG--PRGPKGEPGAPGQVIGGEGPGLPGRKGDPGPS 1373
Score = 26.9 bits (58), Expect = 3.4
Identities = 21/56 (37%), Positives = 22/56 (39%), Gaps = 6/56 (10%)
Query: 4 PWPPHNLGRRGAAGTALPRGLRTEAAVAAQGRLRMPGVPAAGPAPPCG-RGDPGTS 58
P PP G G AG P GL+ E G PG GP G G PG S
Sbjct: 2185 PGPPGAPGLAGPAGPQGPSGLKGE-----PGETGPPGRGLTGPTGAVGLPGPPGPS 2235
>gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Homo
sapiens]
Length = 1751
Score = 31.2 bits (69), Expect = 0.18
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
Query: 6 PPHNLGRRGAAGTALPRGLRTEAAVAAQGRLRMPGVPAAGPAPPCGRGDPG 56
P NLG +G G+ P+G + E G + P A GPA +G+PG
Sbjct: 1158 PKGNLGSKGERGSPGPKGEKGE-----PGSIFSPDGGALGPAQKGAKGEPG 1203
Score = 29.6 bits (65), Expect = 0.53
Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 6/46 (13%)
Query: 11 GRRGAAGTALPRGLRTEAAVAAQGRLRMPGVPAAGPAPPCGRGDPG 56
G +G+ G P G R E+ +A PG PA P PP G PG
Sbjct: 980 GHKGSKGAPGPAGARGESGLAGA-----PG-PAGPPGPPGPPGPPG 1019
Score = 27.7 bits (60), Expect = 2.0
Identities = 19/55 (34%), Positives = 21/55 (38%), Gaps = 1/55 (1%)
Query: 3 LPWPPHNLGRRGAAGTALPRGLRTEAAVAAQGRLRMPGVPAAG-PAPPCGRGDPG 56
LP PP G RG G P+G G PG+ G PP G PG
Sbjct: 1352 LPGPPGPPGPRGYPGIPGPKGESIRGQPGPPGPQGPPGIGYEGRQGPPGPPGPPG 1406
>gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Homo
sapiens]
Length = 1336
Score = 31.2 bits (69), Expect = 0.18
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
Query: 6 PPHNLGRRGAAGTALPRGLRTEAAVAAQGRLRMPGVPAAGPAPPCGRGDPG 56
P NLG +G G+ P+G + E G + P A GPA +G+PG
Sbjct: 743 PKGNLGSKGERGSPGPKGEKGE-----PGSIFSPDGGALGPAQKGAKGEPG 788
Score = 29.6 bits (65), Expect = 0.53
Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 6/46 (13%)
Query: 11 GRRGAAGTALPRGLRTEAAVAAQGRLRMPGVPAAGPAPPCGRGDPG 56
G +G+ G P G R E+ +A PG PA P PP G PG
Sbjct: 565 GHKGSKGAPGPAGARGESGLAGA-----PG-PAGPPGPPGPPGPPG 604
Score = 27.7 bits (60), Expect = 2.0
Identities = 19/55 (34%), Positives = 21/55 (38%), Gaps = 1/55 (1%)
Query: 3 LPWPPHNLGRRGAAGTALPRGLRTEAAVAAQGRLRMPGVPAAG-PAPPCGRGDPG 56
LP PP G RG G P+G G PG+ G PP G PG
Sbjct: 937 LPGPPGPPGPRGYPGIPGPKGESIRGQPGPPGPQGPPGIGYEGRQGPPGPPGPPG 991
>gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Homo
sapiens]
Length = 1516
Score = 31.2 bits (69), Expect = 0.18
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
Query: 6 PPHNLGRRGAAGTALPRGLRTEAAVAAQGRLRMPGVPAAGPAPPCGRGDPG 56
P NLG +G G+ P+G + E G + P A GPA +G+PG
Sbjct: 923 PKGNLGSKGERGSPGPKGEKGE-----PGSIFSPDGGALGPAQKGAKGEPG 968
Score = 29.6 bits (65), Expect = 0.53
Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 6/46 (13%)
Query: 11 GRRGAAGTALPRGLRTEAAVAAQGRLRMPGVPAAGPAPPCGRGDPG 56
G +G+ G P G R E+ +A PG PA P PP G PG
Sbjct: 745 GHKGSKGAPGPAGARGESGLAGA-----PG-PAGPPGPPGPPGPPG 784
Score = 27.7 bits (60), Expect = 2.0
Identities = 19/55 (34%), Positives = 21/55 (38%), Gaps = 1/55 (1%)
Query: 3 LPWPPHNLGRRGAAGTALPRGLRTEAAVAAQGRLRMPGVPAAG-PAPPCGRGDPG 56
LP PP G RG G P+G G PG+ G PP G PG
Sbjct: 1117 LPGPPGPPGPRGYPGIPGPKGESIRGQPGPPGPQGPPGIGYEGRQGPPGPPGPPG 1171
>gi|38150007 small nuclear ribonucleoprotein polypeptide B/B'
isoform B' [Homo sapiens]
Length = 240
Score = 31.2 bits (69), Expect = 0.18
Identities = 20/53 (37%), Positives = 23/53 (43%), Gaps = 10/53 (18%)
Query: 13 RGAAGTA----LPRGLRTEAAVAAQGRLRMPGVPA------AGPAPPCGRGDP 55
RG G + P+G T AA AA + G P GP PP GRG P
Sbjct: 132 RGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAP 184
>gi|4507125 small nuclear ribonucleoprotein polypeptide B/B' isoform
B [Homo sapiens]
Length = 231
Score = 31.2 bits (69), Expect = 0.18
Identities = 20/53 (37%), Positives = 23/53 (43%), Gaps = 10/53 (18%)
Query: 13 RGAAGTA----LPRGLRTEAAVAAQGRLRMPGVPA------AGPAPPCGRGDP 55
RG G + P+G T AA AA + G P GP PP GRG P
Sbjct: 132 RGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAP 184
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 30.8 bits (68), Expect = 0.24
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 4 PWPPHNLGRRGAAGTALPRGLR-TEAAVAAQGRLRMPGVPA-AGPAPPCGR-GDPG 56
P PP + G +G +G + P G R + A G+ + G+P GP P GR GD G
Sbjct: 1120 PGPPGSPGEQGPSGASGPAGPRGPPGSAGAPGKDGLNGLPGPIGPPGPRGRTGDAG 1175
Score = 28.1 bits (61), Expect = 1.5
Identities = 23/59 (38%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
Query: 4 PWPPHNLGRRGAAGTALPRGLRTEAAVAAQGRLRMPG-VPAAGPA-PPCGRGDPGTSCA 60
P P +G +G AG PRG +E +G PG AAGPA P G PG A
Sbjct: 343 PGFPGAVGAKGEAGPQGPRG--SEGPQGVRGEPGPPGPAGAAGPAGNPGADGQPGAKGA 399
Score = 28.1 bits (61), Expect = 1.5
Identities = 22/58 (37%), Positives = 26/58 (44%), Gaps = 7/58 (12%)
Query: 4 PWPPHNLGRRGAAGTALPRGLRTEAAVAAQGRLRMPGVP-AAGPAPPCG----RGDPG 56
P PP G+ G G P+G E A G +PG P A GPA G +G PG
Sbjct: 568 PGPPGARGQAGVMGFPGPKGAAGEPGKA--GERGVPGPPGAVGPAGKDGEAGAQGPPG 623
Score = 27.7 bits (60), Expect = 2.0
Identities = 20/58 (34%), Positives = 25/58 (43%), Gaps = 5/58 (8%)
Query: 4 PWPPHNLGRRGAAGTALPRGLRTEAAVAAQ----GRLRMPGVPAAGPAPPCGRGDPGT 57
P P + G GA G P G++ A + G PG P P PP RG PG+
Sbjct: 436 PGAPGSKGDTGAKGEPGPVGVQGPPGPAGEEGKRGARGEPG-PTGLPGPPGERGGPGS 492
Score = 27.7 bits (60), Expect = 2.0
Identities = 24/71 (33%), Positives = 28/71 (39%), Gaps = 15/71 (21%)
Query: 6 PPHNLGRRGAAGTALPRGLRTEAA-------VAAQGRLRMPGVPA----AGPAPPCGR-- 52
P G RG+ G A P+G EA A+G PG P GP P G+
Sbjct: 504 PKGPAGERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGQDG 563
Query: 53 --GDPGTSCAR 61
G PG AR
Sbjct: 564 RPGPPGPPGAR 574
Score = 27.3 bits (59), Expect = 2.6
Identities = 21/54 (38%), Positives = 23/54 (42%), Gaps = 6/54 (11%)
Query: 11 GRRGAAGTALPRGLRTEAA-VAAQGRLRMPGV-----PAAGPAPPCGRGDPGTS 58
G RGAAG P+G R +A A G GV P P P GD G S
Sbjct: 731 GERGAAGLPGPKGDRGDAGPKGADGSPGKDGVRGLTGPIGPPGPAGAPGDKGES 784
Score = 26.6 bits (57), Expect = 4.5
Identities = 20/56 (35%), Positives = 22/56 (39%), Gaps = 3/56 (5%)
Query: 6 PPHNLGRRGAAGTALPRG-LRTEAAVAAQGRLRMPGVPA--AGPAPPCGRGDPGTS 58
PP G GA+G PRG G PG P P P RG PGT+
Sbjct: 204 PPGEPGEPGASGPMGPRGPPGPPGKNGDDGEAGKPGRPGERGPPGPQGARGLPGTA 259
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 30.8 bits (68), Expect = 0.24
Identities = 23/57 (40%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 3 LPWPPHNLGRRGAAGTALPRGLR-TEAAVAAQGRLRMPGVPA-AGPAPPCGR-GDPG 56
LP PP G +GA+G A P G R V G+ G+P GP P GR G+ G
Sbjct: 1141 LPGPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETG 1197
Score = 28.9 bits (63), Expect = 0.91
Identities = 25/59 (42%), Positives = 29/59 (49%), Gaps = 13/59 (22%)
Query: 3 LPWPPHNLGRRGAAGTALPRGLRTEAAVAAQGRLRMPGVP----AAGPAPPCG-RGDPG 56
LP P G +GA+G A P G AQG + G+P AAG A P G RGD G
Sbjct: 721 LPGTPGTDGPKGASGPAGPPG--------AQGPPGLQGMPGERGAAGIAGPKGDRGDVG 771
Score = 25.8 bits (55), Expect = 7.7
Identities = 19/53 (35%), Positives = 22/53 (41%), Gaps = 8/53 (15%)
Query: 11 GRRGAAGTALPRGLR-------TEAAVAAQGRLRMPGVPAAGPAPPCGRGDPG 56
G RGAAG A P+G R E A G + G P P P G+ G
Sbjct: 753 GERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLTG-PIGPPGPAGANGEKG 804
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 30.8 bits (68), Expect = 0.24
Identities = 23/57 (40%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 3 LPWPPHNLGRRGAAGTALPRGLR-TEAAVAAQGRLRMPGVPA-AGPAPPCGR-GDPG 56
LP PP G +GA+G A P G R V G+ G+P GP P GR G+ G
Sbjct: 1072 LPGPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETG 1128
Score = 28.9 bits (63), Expect = 0.91
Identities = 25/59 (42%), Positives = 29/59 (49%), Gaps = 13/59 (22%)
Query: 3 LPWPPHNLGRRGAAGTALPRGLRTEAAVAAQGRLRMPGVP----AAGPAPPCG-RGDPG 56
LP P G +GA+G A P G AQG + G+P AAG A P G RGD G
Sbjct: 652 LPGTPGTDGPKGASGPAGPPG--------AQGPPGLQGMPGERGAAGIAGPKGDRGDVG 702
Score = 25.8 bits (55), Expect = 7.7
Identities = 19/53 (35%), Positives = 22/53 (41%), Gaps = 8/53 (15%)
Query: 11 GRRGAAGTALPRGLR-------TEAAVAAQGRLRMPGVPAAGPAPPCGRGDPG 56
G RGAAG A P+G R E A G + G P P P G+ G
Sbjct: 684 GERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLTG-PIGPPGPAGANGEKG 735
>gi|239753493 PREDICTED: hypothetical protein [Homo sapiens]
Length = 254
Score = 30.8 bits (68), Expect = 0.24
Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Query: 10 LGRRGAAGTALPRGLRTEAAVAAQGRLRMPGVPAAGPAPPCGRGDPGTSCARETR 64
LGR AG P G R + AQG+LR+P P+ AP G +P ++E R
Sbjct: 127 LGRDRGAGRMSPHGKRADG--QAQGQLRLP--PSTPRAPDRGGCEPRAPRSQELR 177
>gi|239748056 PREDICTED: hypothetical protein XP_002346522 [Homo
sapiens]
Length = 254
Score = 30.8 bits (68), Expect = 0.24
Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Query: 10 LGRRGAAGTALPRGLRTEAAVAAQGRLRMPGVPAAGPAPPCGRGDPGTSCARETR 64
LGR AG P G R + AQG+LR+P P+ AP G +P ++E R
Sbjct: 127 LGRDRGAGRMSPHGKRADG--QAQGQLRLP--PSTPRAPDRGGCEPRAPRSQELR 177
>gi|239741949 PREDICTED: hypothetical protein XP_002342360 [Homo
sapiens]
Length = 254
Score = 30.8 bits (68), Expect = 0.24
Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Query: 10 LGRRGAAGTALPRGLRTEAAVAAQGRLRMPGVPAAGPAPPCGRGDPGTSCARETR 64
LGR AG P G R + AQG+LR+P P+ AP G +P ++E R
Sbjct: 127 LGRDRGAGRMSPHGKRADG--QAQGQLRLP--PSTPRAPDRGGCEPRAPRSQELR 177
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.139 0.469
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,912,743
Number of Sequences: 37866
Number of extensions: 188641
Number of successful extensions: 2039
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 143
Number of HSP's that attempted gapping in prelim test: 1673
Number of HSP's gapped (non-prelim): 515
length of query: 72
length of database: 18,247,518
effective HSP length: 45
effective length of query: 27
effective length of database: 16,543,548
effective search space: 446675796
effective search space used: 446675796
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.