Guide to the Human Genome
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Name: LOC100289333 Sequence: fasta or formatted (72aa) NCBI GI: 239746163
Description:

PREDICTED: hypothetical protein XP_002343666

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            15.3         11           2
 C cysteine            4.2          3           1
 D aspartate           1.4          1           1
 E glutamate           2.8          2           1
 F phenylalanine       0.0          0           0
 G glycine            13.9         10           1
 H histidine           1.4          1           1
 I isoleucine          1.4          1           1
 K lysine              0.0          0           0
 L leucine             6.9          5           1
 M methionine          2.8          2           1
 N asparagine          2.8          2           1
 P proline            15.3         11           2
 Q glutamine           1.4          1           1
 R arginine           18.1         13           2
 S serine              1.4          1           1
 T threonine           5.6          4           1
 V valine              4.2          3           1
 W tryptophan          1.4          1           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343666 
LOC100292335          1.000   PREDICTED: hypothetical protein 
LOC100291529          1.000   PREDICTED: hypothetical protein XP_002347944 
COL4A1                0.061   alpha 1 type IV collagen preproprotein 
GHDC                  0.053   LGP1 homolog isoform 1 
GHDC                  0.053   LGP1 homolog isoform 3 
GHDC                  0.053   LGP1 homolog isoform 2 
COL6A1                0.053   collagen, type VI, alpha 1 precursor 
COL6A3                0.053   alpha 3 type VI collagen isoform 5 precursor 
COL6A3                0.053   alpha 3 type VI collagen isoform 1 precursor 
COL6A3                0.053   alpha 3 type VI collagen isoform 4 precursor 
COL8A2                0.053   collagen, type VIII, alpha 2 
COL11A2               0.053   collagen, type XI, alpha 2 isoform 2 preproprotein ...
COL11A2               0.053   collagen, type XI, alpha 2 isoform 3 preproprotein ...
COL11A2               0.053   collagen, type XI, alpha 2 isoform 1 preproprotein ...
COL11A1               0.046   alpha 1 type XI collagen isoform B preproprotein [Ho...
COL11A1               0.046   alpha 1 type XI collagen isoform C preproprotein [Ho...
COL11A1               0.046   alpha 1 type XI collagen isoform A preproprotein [Ho...
COL7A1                0.046   alpha 1 type VII collagen precursor 
COL18A1               0.046   alpha 1 type XVIII collagen isoform 3 precursor [Ho...
COL18A1               0.046   alpha 1 type XVIII collagen isoform 2 precursor [Ho...
COL18A1               0.046   alpha 1 type XVIII collagen isoform 1 precursor [Ho...
SNRPB                 0.046   small nuclear ribonucleoprotein polypeptide B/B' iso...
SNRPB                 0.046   small nuclear ribonucleoprotein polypeptide B/B' isof...
COL1A1                0.046   alpha 1 type I collagen preproprotein 
COL2A1                0.046   collagen, type II, alpha 1 isoform 1 precursor [Hom...
COL2A1                0.046   collagen, type II, alpha 1 isoform 2 precursor [Hom...
LOC100293848          0.046   PREDICTED: hypothetical protein 
LOC100290829          0.046   PREDICTED: hypothetical protein XP_002346522 
LOC100288535          0.046   PREDICTED: hypothetical protein XP_002342360 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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