Guide to the Human Genome
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Name: LOC100293848 Sequence: fasta or formatted (254aa) NCBI GI: 239753493
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            14.2         36           4
 C cysteine            2.8          7           1
 D aspartate           1.6          4           1
 E glutamate           6.3         16           2
 F phenylalanine       0.8          2           1
 G glycine            11.4         29           2
 H histidine           2.0          5           1
 I isoleucine          0.0          0           0
 K lysine              1.6          4           1
 L leucine             7.9         20           1
 M methionine          0.8          2           1
 N asparagine          1.6          4           1
 P proline            16.5         42           4
 Q glutamine           4.3         11           2
 R arginine           11.4         29           2
 S serine              6.7         17           2
 T threonine           2.8          7           2
 V valine              3.5          9           1
 W tryptophan          2.4          6           1
 Y tyrosine            1.6          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100290829          1.000   PREDICTED: hypothetical protein XP_002346522 
LOC100288535          1.000   PREDICTED: hypothetical protein XP_002342360 
PRB1                  0.050   proline-rich protein BstNI subfamily 1 isoform 1 pre...
CASKIN1               0.048   CASK interacting protein 1 
PRB2                  0.048   proline-rich protein BstNI subfamily 2 
LOC100292568          0.044   PREDICTED: hypothetical protein 
LOC100291146          0.044   PREDICTED: hypothetical protein XP_002346600 
LOC100289534          0.044   PREDICTED: hypothetical protein XP_002342442 
NACA                  0.044   nascent polypeptide-associated complex alpha subuni...
AIM1                  0.044   absent in melanoma 1 
HCN4                  0.042   hyperpolarization activated cyclic nucleotide-gated p...
JPH2                  0.042   junctophilin 2 isoform 1 
TAF4                  0.042   TBP-associated factor 4 
HIVEP3                0.042   human immunodeficiency virus type I enhancer bindin...
HIVEP3                0.041   human immunodeficiency virus type I enhancer bindin...
WIPF1                 0.041   WAS/WASL interacting protein family, member 1 [Homo...
WIPF1                 0.041   WAS/WASL interacting protein family, member 1 
BBC3                  0.041   BCL2 binding component 3 isoform 1 
CIC                   0.041   capicua homolog 
DIAPH1                0.037   diaphanous 1 isoform 2 
DIAPH1                0.037   diaphanous 1 isoform 1 
LOC729580             0.037   PREDICTED: hypothetical protein 
LOC729580             0.037   PREDICTED: hypothetical protein 
LOC729580             0.037   PREDICTED: hypothetical protein 
BAT2                  0.037   HLA-B associated transcript-2 
ANKRD56               0.037   ankyrin repeat domain 56 
LOC645722             0.037   PREDICTED: similar to hCG2037003 
GRIN2D                0.037   N-methyl-D-aspartate receptor subunit 2D precursor ...
PRB4                  0.037   proline-rich protein BstNI subfamily 4 precursor [Ho...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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