Guide to the Human Genome
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Name: LOC100128881 Sequence: fasta or formatted (193aa) NCBI GI: 239751163
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {193aa} PREDICTED: similar to predicted protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.2         12           2
 C cysteine            6.7         13           1
 D aspartate           6.7         13           1
 E glutamate           3.1          6           1
 F phenylalanine       2.1          4           1
 G glycine             6.2         12           2
 H histidine           4.1          8           1
 I isoleucine          1.6          3           1
 K lysine              0.5          1           1
 L leucine            18.1         35           2
 M methionine          1.0          2           1
 N asparagine          0.5          1           1
 P proline            16.6         32           3
 Q glutamine           2.6          5           1
 R arginine            5.2         10           1
 S serine             11.9         23           2
 T threonine           6.2         12           1
 V valine              0.0          0           0
 W tryptophan          0.5          1           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100128881          1.000   PREDICTED: similar to predicted protein 
CASKIN1               0.054   CASK interacting protein 1 
SON                   0.033   SON DNA-binding protein isoform F 
SON                   0.033   SON DNA-binding protein isoform B 
SSPO                  0.033   SCO-spondin 
KRTAP10-4             0.033   keratin associated protein 10-4 
KRTAP10-3             0.031   keratin associated protein 10-3 
LOC100133756          0.031   PREDICTED: hypothetical protein, partial 
LOC644844             0.028   hypothetical protein LOC644844 
LOC100291664          0.028   PREDICTED: hypothetical protein XP_002344837 
LOC100294372          0.028   PREDICTED: hypothetical protein 
LOC100130599          0.028   PREDICTED: similar to Keratin-associated protein 10...
VASN                  0.026   slit-like 2 
KRTAP10-8             0.026   keratin associated protein 10-8 
KRTAP10-9             0.026   keratin associated protein 10-9 
KRTAP10-11            0.026   keratin associated protein 10-11 
KRTAP10-7             0.026   keratin associated protein 10-7 
NACA                  0.026   nascent polypeptide-associated complex alpha subuni...
ANKRD30A              0.026   ankyrin repeat domain 30A 
LOC100130599          0.026   PREDICTED: hypothetical protein 
CDSN                  0.026   corneodesmosin precursor 
KRTAP10-1             0.026   keratin associated protein 10-1 
KRTAP10-12            0.026   keratin associated protein 10-12 
CACNA1G               0.023   voltage-dependent calcium channel alpha 1G subunit i...
CACNA1G               0.023   voltage-dependent calcium channel alpha 1G subunit i...
CACNA1G               0.023   voltage-dependent calcium channel alpha 1G subunit i...
CACNA1G               0.023   voltage-dependent calcium channel alpha 1G subunit i...
CACNA1G               0.023   voltage-dependent calcium channel alpha 1G subunit i...
CACNA1G               0.023   voltage-dependent calcium channel alpha 1G subunit i...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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