Guide to the Human Genome
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Name: CDSN Sequence: fasta or formatted (529aa) NCBI GI: 67782356
Description:

corneodesmosin precursor

Referenced in:

Skin and Related Tissues

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.2         22           2
 C cysteine            2.6         14           1
 D aspartate           2.6         14           1
 E glutamate           0.9          5           1
 F phenylalanine       2.5         13           1
 G glycine            15.7         83           3
 H histidine           1.9         10           1
 I isoleucine          3.8         20           2
 K lysine              3.2         17           1
 L leucine             4.7         25           3
 M methionine          1.1          6           2
 N asparagine          1.9         10           1
 P proline            10.4         55           2
 Q glutamine           4.3         23           1
 R arginine            1.9         10           1
 S serine             27.4        145           6
 T threonine           3.0         16           1
 V valine              5.1         27           5
 W tryptophan          0.2          1           1
 Y tyrosine            2.5         13           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   corneodesmosin precursor 
HRNR                  0.070   hornerin 
DSPP                  0.059   dentin sialophosphoprotein preproprotein 
FLG2                  0.058   filaggrin family member 2 
TNRC18                0.049   trinucleotide repeat containing 18 
LOR                   0.047   loricrin 
MUC21                 0.043   mucin 21 
DMKN                  0.042   dermokine isoform 3 precursor 
DMKN                  0.040   dermokine isoform 5 precursor 
KRT9                  0.040   keratin 9 
KRT76                 0.038   keratin 76 
ARID1B                0.038   AT rich interactive domain 1B (SWI1-like) isoform 1 ...
ARID1B                0.038   AT rich interactive domain 1B (SWI1-like) isoform 3 ...
KRT10                 0.038   keratin 10 
MUC12                 0.037   PREDICTED: mucin 12 
DMKN                  0.037   dermokine isoform 4 precursor 
DMKN                  0.037   dermokine isoform 2 precursor 
MED1                  0.037   mediator complex subunit 1 
NUP214                0.036   nucleoporin 214kDa 
KRT1                  0.036   keratin 1 
DACH1                 0.036   dachshund homolog 1 isoform b 
DACH1                 0.036   dachshund homolog 1 isoform a 
DACH1                 0.036   dachshund homolog 1 isoform c 
MUC12                 0.035   PREDICTED: mucin 12, cell surface associated 
SRRM2                 0.034   splicing coactivator subunit SRm300 
KRT2                  0.034   keratin 2 
CNOT3                 0.034   CCR4-NOT transcription complex, subunit 3 
LOC729815             0.033   PREDICTED: hypothetical protein 
LOC100133915          0.032   PREDICTED: hypothetical protein 
FLG                   0.031   filaggrin 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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