Guide to the Human Genome
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Name: LOC644844 Sequence: fasta or formatted (82aa) NCBI GI: 224548950
Description:

hypothetical protein LOC644844

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             0.0          0           0
 C cysteine            8.5          7           1
 D aspartate           1.2          1           1
 E glutamate           0.0          0           0
 F phenylalanine       0.0          0           0
 G glycine            30.5         25           2
 H histidine          18.3         15           2
 I isoleucine          0.0          0           0
 K lysine              1.2          1           1
 L leucine             0.0          0           0
 M methionine          1.2          1           1
 N asparagine          0.0          0           0
 P proline            39.0         32           3
 Q glutamine           0.0          0           0
 R arginine            0.0          0           0
 S serine              0.0          0           0
 T threonine           0.0          0           0
 V valine              0.0          0           0
 W tryptophan          0.0          0           0
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC644844 
CPSF6                 0.210   cleavage and polyadenylation specific factor 6, 68 ...
WBP11                 0.185   WW domain binding protein 11 
PRB3                  0.175   proline-rich protein BstNI subfamily 3 precursor [H...
PRB1                  0.175   proline-rich protein BstNI subfamily 1 isoform 1 pre...
PRB2                  0.170   proline-rich protein BstNI subfamily 2 
COL13A1               0.170   alpha 1 type XIII collagen isoform 18 
COL13A1               0.170   alpha 1 type XIII collagen isoform 14 
COL13A1               0.170   alpha 1 type XIII collagen isoform 10 
RBM12                 0.165   RNA binding motif protein 12 
RBM12                 0.165   RNA binding motif protein 12 
COL2A1                0.165   collagen, type II, alpha 1 isoform 1 precursor [Hom...
COL2A1                0.165   collagen, type II, alpha 1 isoform 2 precursor [Hom...
COL17A1               0.165   alpha 1 type XVII collagen 
FUBP1                 0.160   far upstream element-binding protein 
SF3B4                 0.160   splicing factor 3b, subunit 4 
COL1A1                0.160   alpha 1 type I collagen preproprotein 
COL5A1                0.160   alpha 1 type V collagen preproprotein 
PRB1                  0.160   proline-rich protein BstNI subfamily 1 isoform 2 pre...
SFPQ                  0.160   splicing factor proline/glutamine rich (polypyrimidin...
SNRPB                 0.155   small nuclear ribonucleoprotein polypeptide B/B' iso...
COL4A3                0.155   alpha 3 type IV collagen isoform 5 precursor 
COL4A3                0.155   alpha 3 type IV collagen isoform 4 precursor 
COL4A3                0.155   alpha 3 type IV collagen isoform 2 precursor 
COL4A3                0.155   alpha 3 type IV collagen isoform 1 precursor 
SMARCA4               0.155   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.155   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.155   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.155   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.155   SWI/SNF-related matrix-associated actin-dependent r...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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