Guide to the Human Genome
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Name: LOC100291664 Sequence: fasta or formatted (208aa) NCBI GI: 239756142
Description:

PREDICTED: hypothetical protein XP_002344837

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.2         13           1
 C cysteine            2.9          6           1
 D aspartate           1.4          3           1
 E glutamate           3.8          8           1
 F phenylalanine       1.9          4           1
 G glycine             9.1         19           2
 H histidine           3.4          7           1
 I isoleucine          4.3          9           1
 K lysine              3.4          7           1
 L leucine             8.7         18           2
 M methionine          2.9          6           1
 N asparagine          3.4          7           1
 P proline             9.1         19           2
 Q glutamine           6.2         13           1
 R arginine            4.3          9           2
 S serine             12.5         26           2
 T threonine           5.3         11           1
 V valine              6.7         14           1
 W tryptophan          2.4          5           1
 Y tyrosine            1.9          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002344837 
LOC100294372          1.000   PREDICTED: hypothetical protein 
LOC100287997          0.495   PREDICTED: hypothetical protein XP_002343330 
LOC100128881          0.027   PREDICTED: hypothetical protein 
LOC100128881          0.027   PREDICTED: similar to predicted protein 
LOC399829             0.025   PREDICTED: FLJ43861 protein 
PHC2                  0.020   polyhomeotic-like 2 isoform a 
NCOR2                 0.017   nuclear receptor co-repressor 2 isoform 2 
NCOR2                 0.017   nuclear receptor co-repressor 2 isoform 1 
FUBP3                 0.015   far upstream element (FUSE) binding protein 3 [Homo...
FLVCR2                0.015   feline leukemia virus subgroup C cellular receptor ...
LOC731605             0.015   PREDICTED: similar to BCL2-associated transcription...
LOC729966             0.015   PREDICTED: similar to hCG2001482 
BCLAF1                0.015   BCL2-associated transcription factor 1 isoform 3 [H...
BCLAF1                0.015   BCL2-associated transcription factor 1 isoform 2 [H...
BCLAF1                0.015   BCL2-associated transcription factor 1 isoform 1 [Hom...
SSPO                  0.012   SCO-spondin 
TMPRSS7               0.012   transmembrane protease, serine 7 
LOC731605             0.012   PREDICTED: similar to BCL2-associated transcription...
MEFV                  0.012   Mediterranean fever protein 
LOC651581             0.012   PREDICTED: hypothetical protein 
GPR64                 0.010   G protein-coupled receptor 64 isoform 3 
LOC100133915          0.010   PREDICTED: hypothetical protein 
GPR64                 0.010   G protein-coupled receptor 64 isoform 2 
TRAFD1                0.007   TRAF-type zinc finger domain containing 1 
TRAFD1                0.007   TRAF-type zinc finger domain containing 1 
FAM65A                0.007   hypothetical protein LOC79567 
GPR64                 0.007   G protein-coupled receptor 64 isoform 1 
NACA                  0.007   nascent polypeptide-associated complex alpha subuni...
ARHGEF12              0.007   Rho guanine nucleotide exchange factor (GEF) 12 [Homo...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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