Guide to the Human Genome
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Name: LOC100133844 Sequence: fasta or formatted (228aa) NCBI GI: 169164497
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             2.6          6           1
 C cysteine           10.5         24           1
 D aspartate           0.9          2           1
 E glutamate           1.3          3           1
 F phenylalanine       1.3          3           2
 G glycine             1.3          3           1
 H histidine           9.2         21           2
 I isoleucine         15.8         36           1
 K lysine              1.8          4           1
 L leucine             2.6          6           1
 M methionine          7.5         17           1
 N asparagine          0.9          2           1
 P proline             1.8          4           1
 Q glutamine           0.0          0           0
 R arginine            1.3          3           1
 S serine              0.4          1           1
 T threonine           6.6         15           1
 V valine             11.4         26           1
 W tryptophan          0.9          2           2
 Y tyrosine           21.9         50           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100133226          0.467   PREDICTED: hypothetical protein 
LOC100131203          0.419   PREDICTED: hypothetical protein 
LOC100129642          0.411   PREDICTED: hypothetical protein 
LOC100134060          0.381   PREDICTED: hypothetical protein 
LOC100131203          0.381   PREDICTED: similar to serine/threonine-protein kina...
LOC100131203          0.381   PREDICTED: similar to serine/threonine-protein kina...
LOC100129825          0.375   PREDICTED: hypothetical protein 
LOC100134411          0.365   PREDICTED: hypothetical protein 
LOC100134730          0.361   PREDICTED: hypothetical protein 
LOC100132016          0.357   PREDICTED: hypothetical protein 
LOC100132107          0.357   PREDICTED: hypothetical protein 
LOC100132679          0.355   PREDICTED: hypothetical protein 
LOC100132983          0.353   PREDICTED: hypothetical protein 
LOC100288317          0.351   PREDICTED: hypothetical protein XP_002342505 
LOC100133173          0.351   PREDICTED: hypothetical protein 
LOC100132016          0.349   PREDICTED: hypothetical protein 
LOC100134353          0.341   PREDICTED: hypothetical protein 
LOC100291751          0.341   PREDICTED: hypothetical protein XP_002345809, parti...
LOC100134332          0.341   PREDICTED: hypothetical protein, partial 
LOC100133807          0.337   PREDICTED: similar to serine/threonine-protein kina...
LOC100293574          0.337   PREDICTED: hypothetical protein, partial 
LOC100133450          0.333   PREDICTED: hypothetical protein, partial 
LOC100287975          0.333   PREDICTED: hypothetical protein XP_002342501, parti...
LOC100293155          0.331   PREDICTED: hypothetical protein 
LOC100133741          0.329   PREDICTED: hypothetical protein 
LOC100134139          0.327   PREDICTED: hypothetical protein 
LOC100134395          0.327   PREDICTED: hypothetical protein, partial 
LOC100133776          0.325   PREDICTED: similar to hCG1820441 
LOC100134279          0.323   PREDICTED: hypothetical protein, partial 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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