Guide to the Human Genome
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Name: LOC100133776 Sequence: fasta or formatted (576aa) NCBI GI: 239750490
Description:

PREDICTED: similar to hCG1820441

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.7         27           2
 C cysteine            6.1         35           2
 D aspartate           1.4          8           1
 E glutamate           4.0         23           2
 F phenylalanine       1.2          7           1
 G glycine             4.9         28           2
 H histidine           5.9         34           1
 I isoleucine          6.9         40           1
 K lysine              4.9         28           1
 L leucine             6.6         38           4
 M methionine          3.1         18           2
 N asparagine          2.6         15           2
 P proline             2.6         15           2
 Q glutamine           3.6         21           2
 R arginine            4.2         24           2
 S serine              6.2         36           2
 T threonine           8.7         50           2
 V valine             11.5         66           2
 W tryptophan          0.5          3           1
 Y tyrosine           10.4         60           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG1820441 
LOC100288317          0.161   PREDICTED: hypothetical protein XP_002342505 
LOC100131203          0.154   PREDICTED: similar to serine/threonine-protein kina...
LOC100131203          0.154   PREDICTED: similar to serine/threonine-protein kina...
LOC100129642          0.153   PREDICTED: hypothetical protein 
LOC100131203          0.152   PREDICTED: hypothetical protein 
LOC100133515          0.147   PREDICTED: hypothetical protein 
LOC100291751          0.146   PREDICTED: hypothetical protein XP_002345809, parti...
LOC100134060          0.144   PREDICTED: hypothetical protein 
LOC100133173          0.141   PREDICTED: hypothetical protein 
LOC100134411          0.141   PREDICTED: hypothetical protein 
LOC100132679          0.140   PREDICTED: hypothetical protein 
LOC100132016          0.139   PREDICTED: hypothetical protein 
LOC100132983          0.139   PREDICTED: hypothetical protein 
LOC100129825          0.138   PREDICTED: hypothetical protein 
LOC100133844          0.137   PREDICTED: hypothetical protein 
LOC100132423          0.136   PREDICTED: hypothetical protein, partial 
LOC100133226          0.136   PREDICTED: hypothetical protein 
LOC100132107          0.135   PREDICTED: hypothetical protein 
LOC100132016          0.135   PREDICTED: hypothetical protein 
LOC100134139          0.132   PREDICTED: hypothetical protein 
LOC100134730          0.131   PREDICTED: hypothetical protein 
LOC100134332          0.130   PREDICTED: hypothetical protein, partial 
LOC100132782          0.130   PREDICTED: hypothetical protein 
LOC100134325          0.130   PREDICTED: hypothetical protein 
LOC100134279          0.128   PREDICTED: hypothetical protein, partial 
LOC100134353          0.127   PREDICTED: hypothetical protein 
LOC100129802          0.125   PREDICTED: hypothetical protein, partial 
LOC100133807          0.125   PREDICTED: similar to serine/threonine-protein kina...
LOC100133741          0.124   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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