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Search of human proteins with 239750914
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239750914 PREDICTED: hypothetical protein XP_002347614 [Homo
sapiens]
(492 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239750914 PREDICTED: hypothetical protein XP_002347614 [Homo ... 1009 0.0
gi|239745312 PREDICTED: hypothetical protein XP_002343435 [Homo ... 1009 0.0
gi|239756393 PREDICTED: hypothetical protein XP_002344913 [Homo ... 664 0.0
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 54 3e-07
gi|110832843 TBP-associated factor 4 [Homo sapiens] 53 7e-07
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 52 1e-06
gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein ... 52 1e-06
gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein ... 52 1e-06
gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein ... 52 1e-06
gi|170650694 centaurin, gamma 1 isoform PIKE-L [Homo sapiens] 51 3e-06
gi|93141049 collagen, type XII, alpha 1 short isoform precursor ... 51 3e-06
gi|93141047 collagen, type XII, alpha 1 long isoform precursor [... 51 3e-06
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 50 4e-06
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 50 4e-06
gi|149158690 HLA-B associated transcript-2 [Homo sapiens] 50 5e-06
gi|4826998 splicing factor proline/glutamine rich (polypyrimidin... 50 6e-06
gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 49 1e-05
gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 49 1e-05
gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo sapi... 49 1e-05
gi|116256356 alpha 4 type IV collagen precursor [Homo sapiens] 48 2e-05
gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens] 47 4e-05
gi|56550039 myeloid/lymphoid or mixed-lineage leukemia protein [... 46 7e-05
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho... 46 7e-05
gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Ho... 46 7e-05
gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Ho... 46 7e-05
gi|162329583 cleavage and polyadenylation specific factor 6, 68 ... 46 7e-05
gi|239757942 PREDICTED: hypothetical protein XP_002346387 [Homo ... 46 7e-05
gi|40353727 synaptopodin isoform A [Homo sapiens] 46 7e-05
gi|158854042 hypothetical protein LOC222183 [Homo sapiens] 46 7e-05
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 46 7e-05
>gi|239750914 PREDICTED: hypothetical protein XP_002347614 [Homo
sapiens]
Length = 492
Score = 1009 bits (2609), Expect = 0.0
Identities = 492/492 (100%), Positives = 492/492 (100%)
Query: 1 MAPLSFPQLRRGLTLLEARGRRPGGKRGTEIRAVGEQLESWRSWRKDVAGCSSPTPIPEF 60
MAPLSFPQLRRGLTLLEARGRRPGGKRGTEIRAVGEQLESWRSWRKDVAGCSSPTPIPEF
Sbjct: 1 MAPLSFPQLRRGLTLLEARGRRPGGKRGTEIRAVGEQLESWRSWRKDVAGCSSPTPIPEF 60
Query: 61 GAAAPTKSALQVQVVPSSQAVEFGQHPGRGLQDRTQPTRIIRGCTVTSPSRQSETQITPA 120
GAAAPTKSALQVQVVPSSQAVEFGQHPGRGLQDRTQPTRIIRGCTVTSPSRQSETQITPA
Sbjct: 61 GAAAPTKSALQVQVVPSSQAVEFGQHPGRGLQDRTQPTRIIRGCTVTSPSRQSETQITPA 120
Query: 121 GGPAAFCDSTAESKRQLRVGAEGKGGGPQALGRGRRVNGPQGPDRWPNGFRPARQRRTRR 180
GGPAAFCDSTAESKRQLRVGAEGKGGGPQALGRGRRVNGPQGPDRWPNGFRPARQRRTRR
Sbjct: 121 GGPAAFCDSTAESKRQLRVGAEGKGGGPQALGRGRRVNGPQGPDRWPNGFRPARQRRTRR 180
Query: 181 PARALNSGQWSPGEGRRAALGLEEAGPSLEGIPSSEWDTFSRDKRSLLSSHGSPGTIQSS 240
PARALNSGQWSPGEGRRAALGLEEAGPSLEGIPSSEWDTFSRDKRSLLSSHGSPGTIQSS
Sbjct: 181 PARALNSGQWSPGEGRRAALGLEEAGPSLEGIPSSEWDTFSRDKRSLLSSHGSPGTIQSS 240
Query: 241 VDIPSLTNTCAGGKDKTPPFSQEVDDPHALSSPFFPKQLGSLSLELPARLPTRCLPSPPR 300
VDIPSLTNTCAGGKDKTPPFSQEVDDPHALSSPFFPKQLGSLSLELPARLPTRCLPSPPR
Sbjct: 241 VDIPSLTNTCAGGKDKTPPFSQEVDDPHALSSPFFPKQLGSLSLELPARLPTRCLPSPPR 300
Query: 301 SLVAPSESGSAGRRGGTNGVATPREKLGGKRGVGRKGQGTRLGAPHSLPPPPPFRTGRGE 360
SLVAPSESGSAGRRGGTNGVATPREKLGGKRGVGRKGQGTRLGAPHSLPPPPPFRTGRGE
Sbjct: 301 SLVAPSESGSAGRRGGTNGVATPREKLGGKRGVGRKGQGTRLGAPHSLPPPPPFRTGRGE 360
Query: 361 GGGGGSRADVTAGRARPRRRRWEPLRAQRSGARPGAPAPPLPCLPPAAVCHALAGAGAPG 420
GGGGGSRADVTAGRARPRRRRWEPLRAQRSGARPGAPAPPLPCLPPAAVCHALAGAGAPG
Sbjct: 361 GGGGGSRADVTAGRARPRRRRWEPLRAQRSGARPGAPAPPLPCLPPAAVCHALAGAGAPG 420
Query: 421 GRLELGLSPGTRLIRGGGAAVPTAAPPAPLPRWGPGPLPGPTGLFDLSVGVSAASSSLGS 480
GRLELGLSPGTRLIRGGGAAVPTAAPPAPLPRWGPGPLPGPTGLFDLSVGVSAASSSLGS
Sbjct: 421 GRLELGLSPGTRLIRGGGAAVPTAAPPAPLPRWGPGPLPGPTGLFDLSVGVSAASSSLGS 480
Query: 481 TELEKNMGSGGG 492
TELEKNMGSGGG
Sbjct: 481 TELEKNMGSGGG 492
>gi|239745312 PREDICTED: hypothetical protein XP_002343435 [Homo
sapiens]
Length = 492
Score = 1009 bits (2609), Expect = 0.0
Identities = 492/492 (100%), Positives = 492/492 (100%)
Query: 1 MAPLSFPQLRRGLTLLEARGRRPGGKRGTEIRAVGEQLESWRSWRKDVAGCSSPTPIPEF 60
MAPLSFPQLRRGLTLLEARGRRPGGKRGTEIRAVGEQLESWRSWRKDVAGCSSPTPIPEF
Sbjct: 1 MAPLSFPQLRRGLTLLEARGRRPGGKRGTEIRAVGEQLESWRSWRKDVAGCSSPTPIPEF 60
Query: 61 GAAAPTKSALQVQVVPSSQAVEFGQHPGRGLQDRTQPTRIIRGCTVTSPSRQSETQITPA 120
GAAAPTKSALQVQVVPSSQAVEFGQHPGRGLQDRTQPTRIIRGCTVTSPSRQSETQITPA
Sbjct: 61 GAAAPTKSALQVQVVPSSQAVEFGQHPGRGLQDRTQPTRIIRGCTVTSPSRQSETQITPA 120
Query: 121 GGPAAFCDSTAESKRQLRVGAEGKGGGPQALGRGRRVNGPQGPDRWPNGFRPARQRRTRR 180
GGPAAFCDSTAESKRQLRVGAEGKGGGPQALGRGRRVNGPQGPDRWPNGFRPARQRRTRR
Sbjct: 121 GGPAAFCDSTAESKRQLRVGAEGKGGGPQALGRGRRVNGPQGPDRWPNGFRPARQRRTRR 180
Query: 181 PARALNSGQWSPGEGRRAALGLEEAGPSLEGIPSSEWDTFSRDKRSLLSSHGSPGTIQSS 240
PARALNSGQWSPGEGRRAALGLEEAGPSLEGIPSSEWDTFSRDKRSLLSSHGSPGTIQSS
Sbjct: 181 PARALNSGQWSPGEGRRAALGLEEAGPSLEGIPSSEWDTFSRDKRSLLSSHGSPGTIQSS 240
Query: 241 VDIPSLTNTCAGGKDKTPPFSQEVDDPHALSSPFFPKQLGSLSLELPARLPTRCLPSPPR 300
VDIPSLTNTCAGGKDKTPPFSQEVDDPHALSSPFFPKQLGSLSLELPARLPTRCLPSPPR
Sbjct: 241 VDIPSLTNTCAGGKDKTPPFSQEVDDPHALSSPFFPKQLGSLSLELPARLPTRCLPSPPR 300
Query: 301 SLVAPSESGSAGRRGGTNGVATPREKLGGKRGVGRKGQGTRLGAPHSLPPPPPFRTGRGE 360
SLVAPSESGSAGRRGGTNGVATPREKLGGKRGVGRKGQGTRLGAPHSLPPPPPFRTGRGE
Sbjct: 301 SLVAPSESGSAGRRGGTNGVATPREKLGGKRGVGRKGQGTRLGAPHSLPPPPPFRTGRGE 360
Query: 361 GGGGGSRADVTAGRARPRRRRWEPLRAQRSGARPGAPAPPLPCLPPAAVCHALAGAGAPG 420
GGGGGSRADVTAGRARPRRRRWEPLRAQRSGARPGAPAPPLPCLPPAAVCHALAGAGAPG
Sbjct: 361 GGGGGSRADVTAGRARPRRRRWEPLRAQRSGARPGAPAPPLPCLPPAAVCHALAGAGAPG 420
Query: 421 GRLELGLSPGTRLIRGGGAAVPTAAPPAPLPRWGPGPLPGPTGLFDLSVGVSAASSSLGS 480
GRLELGLSPGTRLIRGGGAAVPTAAPPAPLPRWGPGPLPGPTGLFDLSVGVSAASSSLGS
Sbjct: 421 GRLELGLSPGTRLIRGGGAAVPTAAPPAPLPRWGPGPLPGPTGLFDLSVGVSAASSSLGS 480
Query: 481 TELEKNMGSGGG 492
TELEKNMGSGGG
Sbjct: 481 TELEKNMGSGGG 492
>gi|239756393 PREDICTED: hypothetical protein XP_002344913 [Homo
sapiens]
Length = 422
Score = 664 bits (1712), Expect = 0.0
Identities = 349/431 (80%), Positives = 359/431 (83%), Gaps = 20/431 (4%)
Query: 1 MAPLSFPQLRRGLTLLEARGRRPGGKRGTEIRAVGEQLESWRSWRKDVAGCSSPTPIPEF 60
MAPLSFPQLRRGLTLLEARGRRPGGKRGTEIRAVGEQLESWRSWRKDVAGCSSPTPIPEF
Sbjct: 1 MAPLSFPQLRRGLTLLEARGRRPGGKRGTEIRAVGEQLESWRSWRKDVAGCSSPTPIPEF 60
Query: 61 GAAAPTKSALQVQVVPSSQAVEFGQHPGRGLQDRTQPTRIIRGCTVTSPSRQSETQITPA 120
GAAAPTKSALQVQVVPSSQAVEFGQHPGRGLQDRTQPTRIIRGCTVTSPSRQSETQITPA
Sbjct: 61 GAAAPTKSALQVQVVPSSQAVEFGQHPGRGLQDRTQPTRIIRGCTVTSPSRQSETQITPA 120
Query: 121 GGPAAFCDSTAESKRQLRVGAEGKGGGPQALGRGRRVNGPQGPDRWPNGFRPARQRRTRR 180
GGPAAFCDSTAESKRQLRVGAEGKGGGPQALGRGRRVNGPQGPDRWPNGFRPARQRRTRR
Sbjct: 121 GGPAAFCDSTAESKRQLRVGAEGKGGGPQALGRGRRVNGPQGPDRWPNGFRPARQRRTRR 180
Query: 181 PARALNSGQWSPGEGRRAALGLEEAGPSLEGIPSSEWDTFSRDKRSLLSSHGSPGTIQSS 240
PARALNSGQWSPGEGRRAALGLEEAGPSLEGIPSSEWDTFSRDKRSLLSSHGSPGTIQSS
Sbjct: 181 PARALNSGQWSPGEGRRAALGLEEAGPSLEGIPSSEWDTFSRDKRSLLSSHGSPGTIQSS 240
Query: 241 VDIPSLTNTCAGGKDKTPPFSQEVDDPHALSSPFFPKQLGSLSLELPARLPTRCLPSPPR 300
VDIPSLTNTCAGGKDKTPPFSQEVDDPHALSSPFFPKQLGSLSLELPARLPTRCLPSPPR
Sbjct: 241 VDIPSLTNTCAGGKDKTPPFSQEVDDPHALSSPFFPKQLGSLSLELPARLPTRCLPSPPR 300
Query: 301 SLVAPSESGSAGRRGGTNGVATPREKLGGKRGVGRKGQGTRLGAPHSLPPPPPFRTGRG- 359
SLVAPSESGSAG+R GTNG ATPR+ G K + H P F
Sbjct: 301 SLVAPSESGSAGKRRGTNGGATPRKSCDASGAWGGKAKA------HGWAPLTAFLRRLHS 354
Query: 360 -----EGGGGGSRADVTAGRARPRRRRWEPLRAQRSGARPGAPAPPL----PCLPPAAVC 410
+GG GG A +T+ RA P R R++ A G PPL CLP +
Sbjct: 355 ALVGVKGGAGG--AALTSLRAVPAREGGAGSRSEPREAARG-QEPPLRHCRACLPQLSAM 411
Query: 411 HALAGAGAPGG 421
+ G G P G
Sbjct: 412 RS-PGQGRPEG 421
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 53.9 bits (128), Expect = 3e-07
Identities = 62/178 (34%), Positives = 65/178 (36%), Gaps = 42/178 (23%)
Query: 299 PRSLVAPSESGSAGRRG--------GTNGVATPREKLGGKRGVGRKGQGTRLGAPHSLPP 350
P L AP SG+ G RG G G A PR G G KG GAP S
Sbjct: 664 PGDLGAPGPSGARGERGFPGERGVQGPPGPAGPRGANGAPGNDGAKGDAGAPGAPGSQGA 723
Query: 351 P-----PPFRTGRGEGGGGGSRADVTAGRARPRRRRWEPLRAQRSGARPGAPAPPLPCLP 405
P P R G G G R D AG P A S + G P P
Sbjct: 724 PGLQGMPGERGAAGLPGPKGDRGD--AG----------PKGADGSPGKDGVRGLTGPIGP 771
Query: 406 PAAVCHALAGAGAPGGRLELGLSPGTRLIRGGGAAVPTAAPPAPLPRWGPGPLPGPTG 463
P AGAPG + E G S G A PT A AP R PGP PGP G
Sbjct: 772 PGP-------AGAPGDKGESGPS---------GPAGPTGARGAPGDRGEPGP-PGPAG 812
Score = 50.4 bits (119), Expect = 4e-06
Identities = 61/207 (29%), Positives = 73/207 (35%), Gaps = 32/207 (15%)
Query: 270 LSSPFFPKQLGSLSLELP-ARLPTRCLPSPPRSLVAPSESGSAGRRG--GTNGVATPREK 326
LS + K G +S+ P R LP PP + G G G G +G PR
Sbjct: 163 LSYGYDEKSTGGISVPGPMGPSGPRGLPGPPGAPGPQGFQGPPGEPGEPGASGPMGPRGP 222
Query: 327 LGGKRGVGRKGQGTRLGAPHSLPPPPPFRTGRG----------EGGGGGSRADVTAGRAR 376
G G G+ + G P PP P + RG +G G S D G A
Sbjct: 223 PGPPGKNGDDGEAGKPGRPGERGPPGP-QGARGLPGTAGLPGMKGHRGFSGLDGAKGDAG 281
Query: 377 PRRRRWEPLRAQRSGARPGAPAPPLPCLPPAAVCHALAGAGAPGGRLELGLSPGTRLIRG 436
P + EP +GA PG P G PG R G +PG RG
Sbjct: 282 PAGPKGEPGSPGENGA-PGQMGP----------------RGLPGERGRPG-APGPAGARG 323
Query: 437 GGAAVPTAAPPAPLPRWGPGPLPGPTG 463
A A PP P GP PG G
Sbjct: 324 NDGATGAAGPPGPTGPAGPPGFPGAVG 350
Score = 43.5 bits (101), Expect = 4e-04
Identities = 106/374 (28%), Positives = 121/374 (32%), Gaps = 78/374 (20%)
Query: 140 GAEGKGGGPQALGR-GRR----VNGPQGPDRWPNGFRPARQRRTRRPARALNSGQWSPGE 194
GA G G P G G R + GP+G DR G + A + R L PG
Sbjct: 716 GAPGSQGAPGLQGMPGERGAAGLPGPKG-DRGDAGPKGADGSPGKDGVRGLTGPIGPPGP 774
Query: 195 GRRAALGLEEAGPSLEGIPSSEWDTFSRDKRSLLSSHGSPGTIQSSVDIPSLTNTCAG-- 252
A E+GPS P+ R G PG P AG
Sbjct: 775 AG-APGDKGESGPSGPAGPTGA--------RGAPGDRGEPG--------PPGPAGFAGPP 817
Query: 253 GKDKTPPFSQEVDDPHALSSPFFPKQLGSL-------SLELPARLPTRCLPSPPRSLVAP 305
G D P E D A P G ++ P R PP + P
Sbjct: 818 GADGQPGAKGEPGDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGAKGARGSAGPPGATGFP 877
Query: 306 SESGSAGRRG-----GTNGVATPREKLGGKRGVGRKGQGTRLGAPHSLPPPPPFRTGRGE 360
+G G G G G P K GGK G G R G PP P
Sbjct: 878 GAAGRVGPPGPSGNAGPPGPPGPAGKEGGKGPRGETGPAGRPGEVGPPGPPGPAGEKGSP 937
Query: 361 GGGGGSRADVTAGR----------ARPRRR-----------RWEPLRAQRSGARPGAPAP 399
G G + A T G P +R EP + SGA G P
Sbjct: 938 GADGPAGAPGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQGPSGA-SGERGP 996
Query: 400 PLPCLPPAAVCHALAG-------AGAPGGRLELGL--SPGTRLIRG-GGAAVPTAAPPAP 449
P P PP LAG GAPG G SPG + RG G A P AP AP
Sbjct: 997 PGPMGPP-----GLAGPPGESGREGAPGAEGSPGRDGSPGAKGDRGETGPAGPPGAPGAP 1051
Query: 450 LPRWGPGPLPGPTG 463
PGP+ GP G
Sbjct: 1052 ---GAPGPV-GPAG 1061
Score = 42.7 bits (99), Expect = 7e-04
Identities = 55/166 (33%), Positives = 64/166 (38%), Gaps = 37/166 (22%)
Query: 304 APSESGSAGRRG--GTNGVATPREKLGGKRGVGRKGQGTRLGAPHSLPPPPPFRTGRGEG 361
AP G G +G G GV P G + G +G+ P LP PP R G G
Sbjct: 438 APGSKGDTGAKGEPGPVGVQGPPGPAGEEGKRGARGEP----GPTGLPGPPGERGG--PG 491
Query: 362 GGGGSRADVTAGRARPRRRRWEPLRAQRSGARPGAPAPPLPCLPPAAVCHALAGAGAPGG 421
G AD AG P R G+P P P P AG PG
Sbjct: 492 SRGFPGADGVAGPKGPAGER-------------GSPGPAGPKGSPGE-------AGRPG- 530
Query: 422 RLELGLSPGTRLIRGG-GAAVP--TAAPPAPLPRWG-PGPLPGPTG 463
E GL PG + + G G+ P PP P + G PGP PGP G
Sbjct: 531 --EAGL-PGAKGLTGSPGSPGPDGKTGPPGPAGQDGRPGP-PGPPG 572
Score = 37.7 bits (86), Expect = 0.024
Identities = 47/166 (28%), Positives = 58/166 (34%), Gaps = 19/166 (11%)
Query: 304 APSESGSAGRRGGTNGVATPREKLGGKRGVGRKGQGTRLGA-----PHSLPPPPPFRTGR 358
+P E+G+ G+ G G+ R + G G +G GA P PP F
Sbjct: 291 SPGENGAPGQMG-PRGLPGERGRPGAPGPAGARGNDGATGAAGPPGPTGPAGPPGFPGAV 349
Query: 359 GEGGGGGSRADVTAGRARPRRRRWEPLRAQRSGARPGAPAPPLPCLPPAAVCHALAG-AG 417
G G G + G P+ R EP +GA A P P A + G AG
Sbjct: 350 GAKGEAGPQGP--RGSEGPQGVRGEPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGIAG 407
Query: 418 APGGRLELGLSPGTRLIRGGGAAVPTAAPPAPLPRWGPGPLPGPTG 463
APG PG R G PP P G PG G
Sbjct: 408 APG-------FPGAR---GPSGPQGPGGPPGPKGNSGEPGAPGSKG 443
Score = 34.7 bits (78), Expect = 0.20
Identities = 39/121 (32%), Positives = 43/121 (35%), Gaps = 18/121 (14%)
Query: 345 PHSLPPPPPFRTGRGEGGGGGSRADVTAGRARPRRRRWEPLRAQRSGARPGAPAPPLPCL 404
P P T EG G + G A P R P +PG P PP P
Sbjct: 96 PDGSESPTDQETTGVEGPKGDTGPRGPRGPAGPPGRDGIP-------GQPGLPGPPGPPG 148
Query: 405 PPAAVCHALAGAGAPGGRLELGLSPGTRLIRGGGAAVPTAAPPAPLPRWGPGP--LPGPT 462
PP G GG LS G GG +VP P+ PR PGP PGP
Sbjct: 149 PP--------GPPGLGGNFAPQLSYGYDEKSTGGISVPGPMGPSG-PRGLPGPPGAPGPQ 199
Query: 463 G 463
G
Sbjct: 200 G 200
Score = 32.7 bits (73), Expect = 0.77
Identities = 33/106 (31%), Positives = 38/106 (35%), Gaps = 33/106 (31%)
Query: 305 PSESGSAGRRG--GTNGVATPREKLGGKRGVGRKGQGTRLGAPHSLPPPPPFRTGRGEGG 362
P GS G +G G +G A PR G G+ G G P + PP P RG G
Sbjct: 1120 PGPPGSPGEQGPSGASGPAGPRGPPGSAGAPGKDGLN---GLPGPIGPPGP----RGRTG 1172
Query: 363 GGGSRADVTAGRARPRRRRWEPLRAQRSGARPGAPAPPLPCLPPAA 408
AG P PG P PP P PP+A
Sbjct: 1173 D--------AGPVGP----------------PGPPGPPGPPGPPSA 1194
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 52.8 bits (125), Expect = 7e-07
Identities = 65/210 (30%), Positives = 78/210 (37%), Gaps = 36/210 (17%)
Query: 279 LGSLSLELPARLPTRCLPSPPRSLVAPSESGSAGRRGGTNGVATPREKLGGKRGVGRKGQ 338
+GSL +L A +P V + +G+ G + A G G G
Sbjct: 26 VGSLESQLAASAAHHHHLAPRTPEVRAAAAGALGNHVVSGSPA-------GAAGAGPAAP 78
Query: 339 GTRLGAPHSLPPPPPFRTGRGEGGGGGSRADVTAGRARPRRRRWEPLRAQRSGARPGAPA 398
GAP + P PPP GR GGGG + G PRR PL P PA
Sbjct: 79 AE--GAPGAAPEPPP--AGRARPGGGGPQRP---GPPSPRR----PLV-------PAGPA 120
Query: 399 PPLPCLPP-----AAVCHALAGAGAPGGRLELGLSPGTRLIRGGGAAVPTAAPPAPLPRW 453
PP L P A C + A A E +P G AA+ A P P P
Sbjct: 121 PPAAKLRPPPEGSAGSCAPVPAAAAVAAGPEP--APAGPAKPAGPAALAARAGPGPGPGP 178
Query: 454 GPGPLPGPTGLFDLSVGVSAASSSLGSTEL 483
GPGP PGP G AA + GS L
Sbjct: 179 GPGPGPGP----GKPAGPGAAQTLNGSAAL 204
Score = 35.4 bits (80), Expect = 0.12
Identities = 53/213 (24%), Positives = 63/213 (29%), Gaps = 50/213 (23%)
Query: 296 PSPPRSLVAPSESGSAGR-----------RGGTNGVATPREKLGGKRGVGRKGQGTRLGA 344
P+PP + + P GSAG G A P + G R G G G
Sbjct: 119 PAPPAAKLRPPPEGSAGSCAPVPAAAAVAAGPEPAPAGPAKPAGPAALAARAGPGPGPG- 177
Query: 345 PHSLPPPPPFRTGRGEGGGGGSRADVTAGRARPRRRRWEPLRAQRSG------------- 391
P P P P G+ G G + +A + +G
Sbjct: 178 PGPGPGPGP---GKPAGPGAAQTLNGSAALLNSHHAAAPAVSLVNNGPAALLPLPKPAAP 234
Query: 392 ------------ARPGAPAPPLPCLPPAAVCHALAGAGAPGGRLELGLSPGTRLIRGGGA 439
A P APA P P PA A A P L PG G
Sbjct: 235 GTVIQTPPFVGAAAPPAPAAPSPPAAPAPAAPAAAPPPPPPAPATLARPPGHP--AGPPT 292
Query: 440 AVPTAAPPAPLPRWG-----PGPLP---GPTGL 464
A P PPA G P P P GP G+
Sbjct: 293 AAPAVPPPAAAQNGGSAGAAPAPAPAAGGPAGV 325
Score = 29.3 bits (64), Expect = 8.5
Identities = 67/288 (23%), Positives = 86/288 (29%), Gaps = 33/288 (11%)
Query: 181 PARALNSGQWSPGEGRRAALGLEE---------AGPSLEGIPSSEWDTFSRDKRSLLSSH 231
PA A +G +P EG A GP G PS +R L+ +
Sbjct: 67 PAGAAGAGPAAPAEGAPGAAPEPPPAGRARPGGGGPQRPGPPSP--------RRPLVPAG 118
Query: 232 GSPGTIQSSVDIPSLTNTCAGGKDKTPPFSQEVDDPHALSSPFFPKQLGSLSLELPARLP 291
+P + +CA + P + P P L + + P P
Sbjct: 119 PAPPAAKLRPPPEGSAGSCAPVPAAAAVAAGPEPAPAGPAKPAGPAALAARAGPGPGPGP 178
Query: 292 TRCLPSPPRSLVAPSESGSAGRRGGTNGVATPREKLGGKRGVGRKGQGTRLGAPHSLPP- 350
P P P+ G+A G+ + + G L P P
Sbjct: 179 G---PGPGPGPGKPAGPGAAQTLNGSAALLNSHHAAAPAVSLVNNGPAALLPLPKPAAPG 235
Query: 351 ----PPPFRTGRGEGGGGGSRADVTAGRARPRRRRWEPLRAQRSGARP-GAPAPP---LP 402
PPF A P P A + ARP G PA P P
Sbjct: 236 TVIQTPPFVGAAAPPAPAAPSPPAAPAPAAPAAAPPPPPPAPATLARPPGHPAGPPTAAP 295
Query: 403 CLPPAAVCHALAGAG-APGGRLELGLSPGTRLIRGGGAAVPTAAPPAP 449
+PP A AG AP G G G GAA AA PAP
Sbjct: 296 AVPPPAAAQNGGSAGAAPAPAPAAGGPAGVSGQPGPGAA---AAAPAP 340
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 52.0 bits (123), Expect = 1e-06
Identities = 107/420 (25%), Positives = 135/420 (32%), Gaps = 95/420 (22%)
Query: 122 GPAAFCDSTAESKRQLRVGAEGKGGGPQALGRGRRVNGPQGPDRWPN-----GFRPARQR 176
GP+ ES R R G G G P + GP G +P GF
Sbjct: 222 GPSGPAGKDGESGRPGRPGERGLPGPPG-------IKGPAGIPGFPGMKGHRGFDGRNGE 274
Query: 177 RTRRPARALNSGQWSPGE-------GRRAALGLEEAGPSLEGIPSSEWDTFSRDKRSLLS 229
+ A L PGE G R A G E P L G + + +R
Sbjct: 275 KGETGAPGLKGENGLPGENGAPGPMGPRGAPG-ERGRPGLPGAAGARGNDGARGSDGQPG 333
Query: 230 SHGSPGTIQ-----------SSVDIPSLTNTCAGGKDKTPPF----SQEVDDPHALS-SP 273
G PGT P +N G + + P +Q P ++ SP
Sbjct: 334 PPGPPGTAGFPGSPGAKGEVGPAGSPG-SNGAPGQRGEPGPQGHAGAQGPPGPPGINGSP 392
Query: 274 FFPKQLGSLSLE-LPARLPTRCLPSPPRSLVAPSESGSAGRRG--GTNGVATPREKLG-- 328
++G + P + R P P + AP G AG G G G PR + G
Sbjct: 393 GGKGEMGPAGIPGAPGLMGARGPPGPAGANGAPGLRGGAGEPGKNGAKGEPGPRGERGEA 452
Query: 329 GKRGV-GRKGQGTRLGAP-----HSLPPP------PPFRTGRGEGGGGGSRADV----TA 372
G GV G KG+ + G+P + LP P FR G G G +
Sbjct: 453 GIPGVPGAKGEDGKDGSPGEPGANGLPGAAGERGAPGFRGPAGPNGIPGEKGPAGERGAP 512
Query: 373 GRARPRRRRWEPLR-----------------------------AQRSGARPGAPAPPLPC 403
G A PR EP R +Q RPG P P P
Sbjct: 513 GPAGPRGAAGEPGRDGVPGGPGMRGMPGSPGGPGSDGKPGPPGSQGESGRPGPPGPSGPR 572
Query: 404 LPPAAVCHALAGAGAPGGRLELGLSPGTRLIRGGGAAVPTAAPPAPLPRWGPGPLPGPTG 463
P + G PG + G +PG RGG PP GP PGPTG
Sbjct: 573 GQPGVM-------GFPGPKGNDG-APGKNGERGGPGGPGPQGPPGKNGETGPQGPPGPTG 624
Score = 49.7 bits (117), Expect = 6e-06
Identities = 109/425 (25%), Positives = 142/425 (33%), Gaps = 62/425 (14%)
Query: 108 SPSRQSETQITPAGGPAA--FCDSTAESKRQLRVGAEGKGGGPQALGR--GRRVNGPQGP 163
SP + E + PAG P + E Q GA+G G P G G+ GP G
Sbjct: 346 SPGAKGE--VGPAGSPGSNGAPGQRGEPGPQGHAGAQGPPGPPGINGSPGGKGEMGPAGI 403
Query: 164 DRWPN--GFRPARQRRTRRPARALNSGQWSPGE----------GRRAALGLE-------E 204
P G R A L G PG+ G R G+ E
Sbjct: 404 PGAPGLMGARGPPGPAGANGAPGLRGGAGEPGKNGAKGEPGPRGERGEAGIPGVPGAKGE 463
Query: 205 AG-------PSLEGIPSSEWDTFSRDKRSLLSSHGSPGTI----QSSVDIPSLTNTCAG- 252
G P G+P + + + R +G PG + P+ AG
Sbjct: 464 DGKDGSPGEPGANGLPGAAGERGAPGFRGPAGPNGIPGEKGPAGERGAPGPAGPRGAAGE 523
Query: 253 -GKDKTPPFSQEVDDPHALSSPFFPKQLGSLSLELPARLPTRCLPSPPRSLVAPSESGSA 311
G+D P P + P + G + + P PS PR P G
Sbjct: 524 PGRDGVPGGPGMRGMPGSPGGPGSDGKPGPPGSQGESGRPGPPGPSGPRG--QPGVMGFP 581
Query: 312 GRRGGTNGVATPREKLGGKRGVGRKGQGTRLGAPHSLPPPPPFRTGRGEGGGGGSRADVT 371
G +G +G + GG G G +G + G PP P G GG + D
Sbjct: 582 GPKGN-DGAPGKNGERGGPGGPGPQGPPGKNGETGPQGPPGPT-------GPGGDKGDT- 632
Query: 372 AGRARPRRRRWEPLRAQRSG--ARPGAPAPPLPCLPPAAVCHALAGAGAPGGRLELGLSP 429
G P+ + P G +PG P P P A AGAPG R GL+
Sbjct: 633 -GPPGPQGLQGLPGTGGPPGENGKPGEPGPKGDAGAPGAP-GGKGDAGAPGERGPPGLA- 689
Query: 430 GTRLIRGGGAAVPTAAPPAPLPRWGPGPLPGPTGLFDLS--VGVSAASSSLGSTELEKNM 487
G +RGG A PP P G PGP G G+ LGS + +
Sbjct: 690 GAPGLRGG------AGPPGPEGGKGAAGPPGPPGAAGTPGLQGMPGERGGLGSPGPKGDK 743
Query: 488 GSGGG 492
G GG
Sbjct: 744 GEPGG 748
Score = 48.1 bits (113), Expect = 2e-05
Identities = 97/341 (28%), Positives = 120/341 (35%), Gaps = 54/341 (15%)
Query: 140 GAEGKGGGPQALG-RGRR-VNGPQGPDRWPNGFRPARQRRTRRPARALNSGQWSPGEGRR 197
G G G P A G RG GP GP+ P PA +R PA + + GE R
Sbjct: 471 GEPGANGLPGAAGERGAPGFRGPAGPNGIPGEKGPAGERGAPGPA----GPRGAAGEPGR 526
Query: 198 AALGLEEAGPSLEGIPSSEWDTFSRDKRSLLSSHGSPGTIQSSVDIPSLTNTCAGGKDKT 257
+ GP + G+P S S K G PG+ S G+
Sbjct: 527 DGV---PGGPGMRGMPGSPGGPGSDGKP------GPPGSQGES------------GRPGP 565
Query: 258 PPFSQEVDDPHALSSPFFPKQLGSLSLELPARLPTRCLPSPPRSLVAPSESGSAGRRG-- 315
P S P + FP G+ P + R P P P ++G G +G
Sbjct: 566 PGPSGPRGQPGVMG---FPGPKGNDGA--PGKNGERGGPGGPGPQGPPGKNGETGPQGPP 620
Query: 316 GTNGVATPREKLGGKRGVGRKGQGTRLGAP--HSLPPPPPFRTGRGEGGGGGSRADVTA- 372
G G + G G +G G P + P P + G G G + D A
Sbjct: 621 GPTGPGGDKGDTGPPGPQGLQGLPGTGGPPGENGKPGEPGPKGDAGAPGAPGGKGDAGAP 680
Query: 373 GRARPRRRRWEPLRAQRSGARP-------GAPAPPLPCLPPAAVCHALAGAGAPGGRLEL 425
G P P R GA P GA PP P P AA L G PG R L
Sbjct: 681 GERGPPGLAGAP--GLRGGAGPPGPEGGKGAAGPPGP--PGAAGTPGLQGM--PGERGGL 734
Query: 426 GLSPGTRLIRGG-GAAVPTAAPPAPLPRWGPGPL--PGPTG 463
G SPG + +G G P PR GP+ PGP G
Sbjct: 735 G-SPGPKGDKGEPGGPGADGVPGKDGPRGPTGPIGPPGPAG 774
Score = 44.3 bits (103), Expect = 3e-04
Identities = 77/285 (27%), Positives = 93/285 (32%), Gaps = 48/285 (16%)
Query: 207 PSLEGIPSSEWDTFSRDKRSLLSSHGSPGTIQSSVDIPSLTNTCAGGKDKTPPFSQEVDD 266
P GIP D + GSPG S P + +C G P D
Sbjct: 111 PGPPGIPGRNGDP------GIPGQPGSPG----SPGPPGICESCPTGPQNYSPQYDSYDV 160
Query: 267 PHALSSPFFPKQLGSLSLELPARLPTRCLPSPPRSLVAPSESGSAGRRG--------GTN 318
++ G PA P P PP + P GS G +G G +
Sbjct: 161 KSGVAVG------GLAGYPGPAGPPGP--PGPPGTSGHPGSPGSPGYQGPPGEPGQAGPS 212
Query: 319 GVATPREKLGGKRGVGRKGQGTRLGAP--HSLPPPPPFRTGRGEGGGGGSRAD-VTAGRA 375
G P +G G+ G+ R G P LP PP + G G G + GR
Sbjct: 213 GPPGPPGAIGPSGPAGKDGESGRPGRPGERGLPGPPGIKGPAGIPGFPGMKGHRGFDGRN 272
Query: 376 RPRRRRWEPLRAQRSGARPGAPAPPLPCLPPAAVCHALAGAGAPGGRLELGLSPGTRLIR 435
+ P +G PG P P P GAPG R GL PG R
Sbjct: 273 GEKGETGAPGLKGENGL-PGENGAPGPMGP----------RGAPGERGRPGL-PGAAGAR 320
Query: 436 GGGAAVPTAAPPAPLPRWGPGPLPGPTGLFDLSVGVSAASSSLGS 480
G A + P P PGP PG G F S G GS
Sbjct: 321 GNDGARGSDGQPGP-----PGP-PGTAG-FPGSPGAKGEVGPAGS 358
Score = 41.2 bits (95), Expect = 0.002
Identities = 36/119 (30%), Positives = 43/119 (36%), Gaps = 30/119 (25%)
Query: 304 APSESGSAGRRG--GTNGVATPREKLGGKRGVGRKGQGTRLGAPHSLPPPPPFRTGRGEG 361
AP G AG++G G+ G A PR +G G+ G G P + PP P R RGE
Sbjct: 1117 APGSPGPAGQQGAIGSPGPAGPRGPVGPSGPPGKDGTS---GHPGPIGPPGP-RGNRGER 1172
Query: 362 GGGGSRADVTAGRARPRRRRWEPLRAQRSGARPGAPAPPLPCLPPAAVCHALAGAGAPG 420
G GS PG P PP P P C + A G
Sbjct: 1173 GSEGSPG------------------------HPGQPGPPGPPGAPGPCCGGVGAAAIAG 1207
Score = 40.0 bits (92), Expect = 0.005
Identities = 85/372 (22%), Positives = 108/372 (29%), Gaps = 79/372 (21%)
Query: 140 GAEGKGGGPQALG--RGRRVNGPQGPDRWPNGFRPARQRRTRRPARALNSGQWSPGEGRR 197
G G GGP A G R + GP G + P P+ SPG+
Sbjct: 861 GERGSPGGPGAAGFPGARGLPGPPGSNGNPGPPGPSG----------------SPGKDGP 904
Query: 198 AALGLEEAGPSLEGIPSSEWDTFSRDKRSLLSSHGSPGTIQSSVDIPSLTNTCAGGKDKT 257
P G+ + D ++ + G PG + I +T
Sbjct: 905 PGPAGNTGAPGSPGVSGPKGDAGQPGEKGSPGAQGPPGA-PGPLGIAGITGARGLAGPPG 963
Query: 258 PPFSQEVDDPHALSSPFFPKQLGSLSLELPARLPTRCLPSPPRSLVAPSESGSAGRRG-- 315
P + P + LS E PP P +G+AG G
Sbjct: 964 MPGPRGSPGPQGVKGESGKPGANGLSGER----------GPPGPQGLPGLAGTAGEPGRD 1013
Query: 316 ---GTNGVATPREKLGGKRGVGRKGQGTRLGAPHSLPPPPPFRTGRGEGGGGGSRADVTA 372
G++G+ GGK G G GAP PP P G G S A
Sbjct: 1014 GNPGSDGLPGRDGSPGGKGDRGENGSPGAPGAPGHPGPPGPVGPAGKSGDRGESGPAGPA 1073
Query: 373 GRARPRRRRWEP-------------------LRAQRS-GARPGAPAPPLPCLPPAAVCHA 412
G P R P ++ R PGAP P PA A
Sbjct: 1074 GAPGPAGSRGAPGPQGPRGDKGETGERGAAGIKGHRGFPGNPGAPGSP----GPAGQQGA 1129
Query: 413 LAGAGAPGGRLELGLS-----------------PGTRLIRG----GGAAVPTAAPPAPLP 451
+ G G R +G S PG R RG G+ P P P
Sbjct: 1130 IGSPGPAGPRGPVGPSGPPGKDGTSGHPGPIGPPGPRGNRGERGSEGSPGHPGQPGPPGP 1189
Query: 452 RWGPGPLPGPTG 463
PGP G G
Sbjct: 1190 PGAPGPCCGGVG 1201
>gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein [Homo
sapiens]
Length = 1650
Score = 52.0 bits (123), Expect = 1e-06
Identities = 95/344 (27%), Positives = 118/344 (34%), Gaps = 57/344 (16%)
Query: 140 GAEGKGGG--PQALGRGRRVNGPQGPDRWPNGFRPARQRRTRRPARALNSGQWSPGE-GR 196
GA+G GG P R + GPQGP+ +P P P G PG G+
Sbjct: 773 GAKGTSGGDGPHGPPGERGLPGPQGPNGFPGPKGP--------PGPPGKDG--LPGHPGQ 822
Query: 197 RAALGLE-----EAGPSLEGIPSSEWDTFSRDKRSLLSSHGSPGTIQSSVDIPSLTNTCA 251
R +G + P + G + +T +R G PG +P
Sbjct: 823 RGEVGFQGKTGPPGPPGVVGPQGAAGETGPMGERGHPGPPGPPG----EQGLPGTAGKEG 878
Query: 252 GGKDKTPPFSQEVDDPHALSSPFFPKQLGSLSLELPARLPTRCLPS-PPRSLVAPSESGS 310
D PP + D P L FP + G L PS PP +P E G+
Sbjct: 879 TKGDPGPPGAPGKDGPAGLRG--FPGERGLPGTAGGPGLKGNEGPSGPPGPAGSPGERGA 936
Query: 311 AGRRG--GTNGVATPREKLG--GKRGV-GRKGQGTRLG-----APHSLPPPPPFRTGRGE 360
AG G G G P+ G G++GV G KG G P LP P GE
Sbjct: 937 AGSGGPIGPPGRPGPQGPPGAAGEKGVPGEKGPIGPTGRDGVQGPVGLPGPAGPPGVAGE 996
Query: 361 GGGGGSRADVTAGRARPRRRRWEPLRAQRSGARPGAPAPPLPC-LPPAAVCHALAGAGAP 419
G G D + + P PG P P P P AA GA P
Sbjct: 997 DGDKGEVGDPGQKGTKGNKGEHGP---------PGPPGPIGPVGQPGAAGADGEPGARGP 1047
Query: 420 GGRLELGLSPGTRLIRGGGAAVPTAAPPAPLPRWGPGPLPGPTG 463
G GTR G PP P+ G LPGP+G
Sbjct: 1048 QGHFGAKGDEGTRGFNG---------PPGPIGLQG---LPGPSG 1079
Score = 48.5 bits (114), Expect = 1e-05
Identities = 57/192 (29%), Positives = 70/192 (36%), Gaps = 25/192 (13%)
Query: 298 PPRSLVAPSESGSAGRRGGTNGVATPREKLGGKRGVGRKGQGTRLG--------APHSLP 349
PP P ESGS G +G GV PR + G K G+ G+ G P P
Sbjct: 1122 PPGEKGEPGESGSPGIQGEP-GVKGPRGERGEKGESGQPGEPGPPGPKGPTGDDGPKGNP 1180
Query: 350 PPPPFRTGRGEGGGGGSRADVTAGRARPRRRRWEPLRAQRSGARPGAPAPPLPCLPPAAV 409
P F G G GG R G R EP +PG+P P PP +
Sbjct: 1181 GPVGFPGDPGPPGEGGPRGQ--DGAKGDRGEDGEP-------GQPGSPGPTGENGPPGPL 1231
Query: 410 CHALAGAGAPGGRLELGLSPGTRLIRGGGAAVPTAAPPAPLPRWGPGPLPGPTGLFDL-- 467
AG+PG G + +G A+ P+ GP PGP GL L
Sbjct: 1232 GKR-GPAGSPGSEGR----QGGKGAKGDPGAIGAPGKTGPVGPAGPAGKPGPDGLRGLPG 1286
Query: 468 SVGVSAASSSLG 479
SVG + G
Sbjct: 1287 SVGQQGRPGATG 1298
Score = 43.9 bits (102), Expect = 3e-04
Identities = 89/354 (25%), Positives = 118/354 (33%), Gaps = 75/354 (21%)
Query: 140 GAEGKGGGPQALGRGRRVNGPQGPDRWPNGFRPARQRRTRRPARALNSGQWSPGEGRRAA 199
G +G+ G P L G V GP GP EG
Sbjct: 294 GLKGEKGEPAVLEPGMLVEGPPGP------------------------------EGPAGL 323
Query: 200 LGLEEAGPSLEGIPSSEWDTFSR---DKRSLLSSHGSPGTIQSSVDIPSLTNTCAGGKDK 256
+G P ++G P D R + L S G+PG +S+ +P +GG DK
Sbjct: 324 IG----PPGIQGNPGPVGDPGERGPPGRAGLPGSDGAPGPPGTSLMLPFRFG--SGGGDK 377
Query: 257 TPPFSQEVDDPHALSSPFFPKQLGSLSLE-LPARLPTRCLPSP---PRSLVAPSESGSAG 312
P + + A+ Q L+L P + P P P S ESG G
Sbjct: 378 GPVVAAQEAQAQAI------LQQARLALRGPPGPMGYTGRPGPLGQPGSPGLKGESGDLG 431
Query: 313 RRG--GTNGVATPREKLGGKRGVGRKGQGTRLGAP--------HSLPPPPPFRTGRGEGG 362
+G G G+ P K G + G G G P LP P + RG+ G
Sbjct: 432 PQGPRGPQGLTGPPGKAGRRGRAGADGARGMPGDPGVKGDRGFDGLPGLPGEKGHRGDTG 491
Query: 363 G---------GGSRADVTAGRARPRRRRWE--PLRAQRSGARPGAPAPP--LPCLPPAAV 409
G R D G PR E P PG P PP P
Sbjct: 492 AQGLPGPPGEDGERGD--DGEIGPRGLPGESGPRGLLGPKGPPGIPGPPGVRGMDGPQGP 549
Query: 410 CHALAGAGAPGGRLELGLSPGTRLIRGGGAAVPTAAPPAPLPRWGPGPLPGPTG 463
+L G PG + G +PGT+ + G A+ P + G +PG G
Sbjct: 550 KGSLGPQGEPGPPGQQG-TPGTQGLPGPQGAIGPHGEKGPQGKPGLPGMPGSDG 602
Score = 39.3 bits (90), Expect = 0.008
Identities = 56/196 (28%), Positives = 69/196 (35%), Gaps = 34/196 (17%)
Query: 292 TRCLPSPPRSLVAPSESGSAGRRGGTNGVATPREKLGGKRGVGRKGQGTRLGAPHSLPPP 351
TR PP + G +G +G T V +G G +G GA PP
Sbjct: 1059 TRGFNGPPGPIGLQGLPGPSGEKGETGDVGP----MGPPGPPGPRGPAGPNGADGPQGPP 1114
Query: 352 -------PPFRTGR-GEGGGGGSRADVTAGRARPRRRRWEPLRAQRSGARPGAPAPPLPC 403
PP G GE G G + + G PR R E + +PG P PP P
Sbjct: 1115 GGVGNLGPPGEKGEPGESGSPGIQGE--PGVKGPRGERGE----KGESGQPGEPGPPGPK 1168
Query: 404 LP-----PAAVCHALAGAGAPGGRLELGL--SPGTRLIRGG-------GAAVPTA--APP 447
P P + G PG E G G + RG G+ PT PP
Sbjct: 1169 GPTGDDGPKGNPGPVGFPGDPGPPGEGGPRGQDGAKGDRGEDGEPGQPGSPGPTGENGPP 1228
Query: 448 APLPRWGPGPLPGPTG 463
PL + GP PG G
Sbjct: 1229 GPLGKRGPAGSPGSEG 1244
Score = 38.5 bits (88), Expect = 0.014
Identities = 62/224 (27%), Positives = 78/224 (34%), Gaps = 59/224 (26%)
Query: 296 PSPPRSLVAPSESGSAGRRG--------GTNGVATPREKLGGKRGVGRKGQGTRLGAP-- 345
P PP + G G G G G PR + G K G G+ + G+P
Sbjct: 1162 PGPPGPKGPTGDDGPKGNPGPVGFPGDPGPPGEGGPRGQDGAKGDRGEDGEPGQPGSPGP 1221
Query: 346 --HSLPPPPPFRTG-------RGEGGGGGSRADV----------------TAGRARPRRR 380
+ PP P + G G GG G++ D AG+ P
Sbjct: 1222 TGENGPPGPLGKRGPAGSPGSEGRQGGKGAKGDPGAIGAPGKTGPVGPAGPAGKPGPDGL 1281
Query: 381 RWEPLRAQRSGARPGAPA---PPLPCLPPAAVCHALAG-AGAPGGRLELGL-----SPGT 431
R P + G RPGA PP P PP L G AGA G + GL PG
Sbjct: 1282 RGLPGSVGQQG-RPGATGQAGPPGPVGPPGLP--GLRGDAGAKGEKGHPGLIGLIGPPGE 1338
Query: 432 RLIRGG-GAAVPTAAP-----------PAPLPRWGPGPLPGPTG 463
+ +G G P +P P+ GP LPGP G
Sbjct: 1339 QGEKGDRGLPGPQGSPGQKGEMGIPGASGPIGPGGPPGLPGPAG 1382
Score = 37.0 bits (84), Expect = 0.041
Identities = 87/341 (25%), Positives = 115/341 (33%), Gaps = 63/341 (18%)
Query: 138 RVGAEGKGGGPQALGRGRRVNGPQGPDRWPNGFRPARQRRTRRPARALNSGQWSPGE--- 194
R G G+ G P G + GPQGP R P G + RR + + PG+
Sbjct: 411 RPGPLGQPGSPGLKGESGDL-GPQGP-RGPQGLTGPPGKAGRRGRAGADGARGMPGDPGV 468
Query: 195 -GRRAALGLEEAGPSLEGIPSSEWDTFSRDKRSLLSSHGSPGTIQSSVDIPSLTNTCAGG 253
G R GL P L G DT + G PG G
Sbjct: 469 KGDRGFDGL----PGLPGEKGHRGDT---------GAQGLPGP---------------PG 500
Query: 254 KDKTPPFSQEVDDPHALSSPFFPKQL----GSLSLELPARLPTRCLPSPPRSLVAPS-ES 308
+D E+ P L P+ L G + P + P P+ + P E
Sbjct: 501 EDGERGDDGEIG-PRGLPGESGPRGLLGPKGPPGIPGPPGVRGMDGPQGPKGSLGPQGEP 559
Query: 309 GSAGRRG--GTNGVATPREKLGGKRGVGRKGQGTRLGAPHSLPPPP-PFRTGRG--EGGG 363
G G++G GT G+ P+ +G G +G+ G P S PP P + G +G
Sbjct: 560 GPPGQQGTPGTQGLPGPQGAIGPHGEKGPQGKPGLPGMPGSDGPPGHPGKEGPPGTKGNQ 619
Query: 364 GGSRADVTAGRARPRRRRWEPLRAQRSGARPGAPAPPLPCLPPAAVCHALAGAGAPGGRL 423
G S G PR + G + P G G R
Sbjct: 620 GPSGPQGPLGYPGPRGVKGVDGIRGLKGHKGEKGEDGFPGFK--------GDIGVKGDRG 671
Query: 424 ELGLSPGTRLIRGGGAAVPTAAPPAPLPRWGPGPLPGPTGL 464
E+G+ PG+R G P P R GP PGP GL
Sbjct: 672 EVGV-PGSRGEDG---------PEGPKGRTGPTGDPGPPGL 702
Score = 31.6 bits (70), Expect = 1.7
Identities = 60/272 (22%), Positives = 89/272 (32%), Gaps = 64/272 (23%)
Query: 140 GAEGKGGGPQALGRGRRVNGPQGP--DRWPNGFRPARQRRTRRPARALNSGQWSPGEGRR 197
G G+ G P G NGP GP R P G + R+ + A+ +PG +
Sbjct: 1211 GEPGQPGSPGPTGE----NGPPGPLGKRGPAGSPGSEGRQGGKGAKGDPGAIGAPG--KT 1264
Query: 198 AALGLEEAGPSLEGIPSSEWDTFSRDKRSLLSSHGSPGTIQSSVDIPSLTNTCAGGKDKT 257
+G AGP+ G P + G PG++ G+
Sbjct: 1265 GPVG--PAGPA--GKPGPD------------GLRGLPGSV---------------GQQGR 1293
Query: 258 PPFSQEVDDPHALSSPFFPKQLGSLSLELPARLPTRCLPSPPRSLVAPSESGSAGRRGGT 317
P + + P + P P G + + P + P E G G RG
Sbjct: 1294 PGATGQAGPPGPVGPPGLPGLRGDAGAK-----GEKGHPGLIGLIGPPGEQGEKGDRGLP 1348
Query: 318 NGVATPREKLGGKRGVGRKGQGTRLGAPHSLPPPPPFRTGRGEGGGGGSRADVTAGRARP 377
+P +K G+ G+ G P LP P + +G G GG + + G P
Sbjct: 1349 GPQGSPGQK--GEMGIPGASGPIGPGGPPGLPGPAGPKGAKGATGPGGPKGE--KGVQGP 1404
Query: 378 RRRRWEPLRAQRSGARPGAPAPPLPCLPPAAV 409
PG P PP + P +
Sbjct: 1405 ----------------PGHPGPPGEVIQPLPI 1420
>gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein [Homo
sapiens]
Length = 1629
Score = 52.0 bits (123), Expect = 1e-06
Identities = 95/344 (27%), Positives = 118/344 (34%), Gaps = 57/344 (16%)
Query: 140 GAEGKGGG--PQALGRGRRVNGPQGPDRWPNGFRPARQRRTRRPARALNSGQWSPGE-GR 196
GA+G GG P R + GPQGP+ +P P P G PG G+
Sbjct: 752 GAKGTSGGDGPHGPPGERGLPGPQGPNGFPGPKGP--------PGPPGKDG--LPGHPGQ 801
Query: 197 RAALGLE-----EAGPSLEGIPSSEWDTFSRDKRSLLSSHGSPGTIQSSVDIPSLTNTCA 251
R +G + P + G + +T +R G PG +P
Sbjct: 802 RGEVGFQGKTGPPGPPGVVGPQGAAGETGPMGERGHPGPPGPPG----EQGLPGTAGKEG 857
Query: 252 GGKDKTPPFSQEVDDPHALSSPFFPKQLGSLSLELPARLPTRCLPS-PPRSLVAPSESGS 310
D PP + D P L FP + G L PS PP +P E G+
Sbjct: 858 TKGDPGPPGAPGKDGPAGLRG--FPGERGLPGTAGGPGLKGNEGPSGPPGPAGSPGERGA 915
Query: 311 AGRRG--GTNGVATPREKLG--GKRGV-GRKGQGTRLG-----APHSLPPPPPFRTGRGE 360
AG G G G P+ G G++GV G KG G P LP P GE
Sbjct: 916 AGSGGPIGPPGRPGPQGPPGAAGEKGVPGEKGPIGPTGRDGVQGPVGLPGPAGPPGVAGE 975
Query: 361 GGGGGSRADVTAGRARPRRRRWEPLRAQRSGARPGAPAPPLPC-LPPAAVCHALAGAGAP 419
G G D + + P PG P P P P AA GA P
Sbjct: 976 DGDKGEVGDPGQKGTKGNKGEHGP---------PGPPGPIGPVGQPGAAGADGEPGARGP 1026
Query: 420 GGRLELGLSPGTRLIRGGGAAVPTAAPPAPLPRWGPGPLPGPTG 463
G GTR G PP P+ G LPGP+G
Sbjct: 1027 QGHFGAKGDEGTRGFNG---------PPGPIGLQG---LPGPSG 1058
Score = 48.5 bits (114), Expect = 1e-05
Identities = 57/192 (29%), Positives = 70/192 (36%), Gaps = 25/192 (13%)
Query: 298 PPRSLVAPSESGSAGRRGGTNGVATPREKLGGKRGVGRKGQGTRLG--------APHSLP 349
PP P ESGS G +G GV PR + G K G+ G+ G P P
Sbjct: 1101 PPGEKGEPGESGSPGIQGEP-GVKGPRGERGEKGESGQPGEPGPPGPKGPTGDDGPKGNP 1159
Query: 350 PPPPFRTGRGEGGGGGSRADVTAGRARPRRRRWEPLRAQRSGARPGAPAPPLPCLPPAAV 409
P F G G GG R G R EP +PG+P P PP +
Sbjct: 1160 GPVGFPGDPGPPGEGGPRGQ--DGAKGDRGEDGEP-------GQPGSPGPTGENGPPGPL 1210
Query: 410 CHALAGAGAPGGRLELGLSPGTRLIRGGGAAVPTAAPPAPLPRWGPGPLPGPTGLFDL-- 467
AG+PG G + +G A+ P+ GP PGP GL L
Sbjct: 1211 GKR-GPAGSPGSEGR----QGGKGAKGDPGAIGAPGKTGPVGPAGPAGKPGPDGLRGLPG 1265
Query: 468 SVGVSAASSSLG 479
SVG + G
Sbjct: 1266 SVGQQGRPGATG 1277
Score = 43.9 bits (102), Expect = 3e-04
Identities = 89/354 (25%), Positives = 118/354 (33%), Gaps = 75/354 (21%)
Query: 140 GAEGKGGGPQALGRGRRVNGPQGPDRWPNGFRPARQRRTRRPARALNSGQWSPGEGRRAA 199
G +G+ G P L G V GP GP EG
Sbjct: 273 GLKGEKGEPAVLEPGMLVEGPPGP------------------------------EGPAGL 302
Query: 200 LGLEEAGPSLEGIPSSEWDTFSR---DKRSLLSSHGSPGTIQSSVDIPSLTNTCAGGKDK 256
+G P ++G P D R + L S G+PG +S+ +P +GG DK
Sbjct: 303 IG----PPGIQGNPGPVGDPGERGPPGRAGLPGSDGAPGPPGTSLMLPFRFG--SGGGDK 356
Query: 257 TPPFSQEVDDPHALSSPFFPKQLGSLSLE-LPARLPTRCLPSP---PRSLVAPSESGSAG 312
P + + A+ Q L+L P + P P P S ESG G
Sbjct: 357 GPVVAAQEAQAQAI------LQQARLALRGPPGPMGYTGRPGPLGQPGSPGLKGESGDLG 410
Query: 313 RRG--GTNGVATPREKLGGKRGVGRKGQGTRLGAP--------HSLPPPPPFRTGRGEGG 362
+G G G+ P K G + G G G P LP P + RG+ G
Sbjct: 411 PQGPRGPQGLTGPPGKAGRRGRAGADGARGMPGDPGVKGDRGFDGLPGLPGEKGHRGDTG 470
Query: 363 G---------GGSRADVTAGRARPRRRRWE--PLRAQRSGARPGAPAPP--LPCLPPAAV 409
G R D G PR E P PG P PP P
Sbjct: 471 AQGLPGPPGEDGERGD--DGEIGPRGLPGESGPRGLLGPKGPPGIPGPPGVRGMDGPQGP 528
Query: 410 CHALAGAGAPGGRLELGLSPGTRLIRGGGAAVPTAAPPAPLPRWGPGPLPGPTG 463
+L G PG + G +PGT+ + G A+ P + G +PG G
Sbjct: 529 KGSLGPQGEPGPPGQQG-TPGTQGLPGPQGAIGPHGEKGPQGKPGLPGMPGSDG 581
Score = 39.3 bits (90), Expect = 0.008
Identities = 56/196 (28%), Positives = 69/196 (35%), Gaps = 34/196 (17%)
Query: 292 TRCLPSPPRSLVAPSESGSAGRRGGTNGVATPREKLGGKRGVGRKGQGTRLGAPHSLPPP 351
TR PP + G +G +G T V +G G +G GA PP
Sbjct: 1038 TRGFNGPPGPIGLQGLPGPSGEKGETGDVGP----MGPPGPPGPRGPAGPNGADGPQGPP 1093
Query: 352 -------PPFRTGR-GEGGGGGSRADVTAGRARPRRRRWEPLRAQRSGARPGAPAPPLPC 403
PP G GE G G + + G PR R E + +PG P PP P
Sbjct: 1094 GGVGNLGPPGEKGEPGESGSPGIQGE--PGVKGPRGERGE----KGESGQPGEPGPPGPK 1147
Query: 404 LP-----PAAVCHALAGAGAPGGRLELGL--SPGTRLIRGG-------GAAVPTA--APP 447
P P + G PG E G G + RG G+ PT PP
Sbjct: 1148 GPTGDDGPKGNPGPVGFPGDPGPPGEGGPRGQDGAKGDRGEDGEPGQPGSPGPTGENGPP 1207
Query: 448 APLPRWGPGPLPGPTG 463
PL + GP PG G
Sbjct: 1208 GPLGKRGPAGSPGSEG 1223
Score = 38.5 bits (88), Expect = 0.014
Identities = 62/224 (27%), Positives = 78/224 (34%), Gaps = 59/224 (26%)
Query: 296 PSPPRSLVAPSESGSAGRRG--------GTNGVATPREKLGGKRGVGRKGQGTRLGAP-- 345
P PP + G G G G G PR + G K G G+ + G+P
Sbjct: 1141 PGPPGPKGPTGDDGPKGNPGPVGFPGDPGPPGEGGPRGQDGAKGDRGEDGEPGQPGSPGP 1200
Query: 346 --HSLPPPPPFRTG-------RGEGGGGGSRADV----------------TAGRARPRRR 380
+ PP P + G G GG G++ D AG+ P
Sbjct: 1201 TGENGPPGPLGKRGPAGSPGSEGRQGGKGAKGDPGAIGAPGKTGPVGPAGPAGKPGPDGL 1260
Query: 381 RWEPLRAQRSGARPGAPA---PPLPCLPPAAVCHALAG-AGAPGGRLELGL-----SPGT 431
R P + G RPGA PP P PP L G AGA G + GL PG
Sbjct: 1261 RGLPGSVGQQG-RPGATGQAGPPGPVGPPGLP--GLRGDAGAKGEKGHPGLIGLIGPPGE 1317
Query: 432 RLIRGG-GAAVPTAAP-----------PAPLPRWGPGPLPGPTG 463
+ +G G P +P P+ GP LPGP G
Sbjct: 1318 QGEKGDRGLPGPQGSPGQKGEMGIPGASGPIGPGGPPGLPGPAG 1361
Score = 37.0 bits (84), Expect = 0.041
Identities = 87/341 (25%), Positives = 115/341 (33%), Gaps = 63/341 (18%)
Query: 138 RVGAEGKGGGPQALGRGRRVNGPQGPDRWPNGFRPARQRRTRRPARALNSGQWSPGE--- 194
R G G+ G P G + GPQGP R P G + RR + + PG+
Sbjct: 390 RPGPLGQPGSPGLKGESGDL-GPQGP-RGPQGLTGPPGKAGRRGRAGADGARGMPGDPGV 447
Query: 195 -GRRAALGLEEAGPSLEGIPSSEWDTFSRDKRSLLSSHGSPGTIQSSVDIPSLTNTCAGG 253
G R GL P L G DT + G PG G
Sbjct: 448 KGDRGFDGL----PGLPGEKGHRGDT---------GAQGLPGP---------------PG 479
Query: 254 KDKTPPFSQEVDDPHALSSPFFPKQL----GSLSLELPARLPTRCLPSPPRSLVAPS-ES 308
+D E+ P L P+ L G + P + P P+ + P E
Sbjct: 480 EDGERGDDGEIG-PRGLPGESGPRGLLGPKGPPGIPGPPGVRGMDGPQGPKGSLGPQGEP 538
Query: 309 GSAGRRG--GTNGVATPREKLGGKRGVGRKGQGTRLGAPHSLPPPP-PFRTGRG--EGGG 363
G G++G GT G+ P+ +G G +G+ G P S PP P + G +G
Sbjct: 539 GPPGQQGTPGTQGLPGPQGAIGPHGEKGPQGKPGLPGMPGSDGPPGHPGKEGPPGTKGNQ 598
Query: 364 GGSRADVTAGRARPRRRRWEPLRAQRSGARPGAPAPPLPCLPPAAVCHALAGAGAPGGRL 423
G S G PR + G + P G G R
Sbjct: 599 GPSGPQGPLGYPGPRGVKGVDGIRGLKGHKGEKGEDGFPGFK--------GDIGVKGDRG 650
Query: 424 ELGLSPGTRLIRGGGAAVPTAAPPAPLPRWGPGPLPGPTGL 464
E+G+ PG+R G P P R GP PGP GL
Sbjct: 651 EVGV-PGSRGEDG---------PEGPKGRTGPTGDPGPPGL 681
Score = 31.6 bits (70), Expect = 1.7
Identities = 60/272 (22%), Positives = 89/272 (32%), Gaps = 64/272 (23%)
Query: 140 GAEGKGGGPQALGRGRRVNGPQGP--DRWPNGFRPARQRRTRRPARALNSGQWSPGEGRR 197
G G+ G P G NGP GP R P G + R+ + A+ +PG +
Sbjct: 1190 GEPGQPGSPGPTGE----NGPPGPLGKRGPAGSPGSEGRQGGKGAKGDPGAIGAPG--KT 1243
Query: 198 AALGLEEAGPSLEGIPSSEWDTFSRDKRSLLSSHGSPGTIQSSVDIPSLTNTCAGGKDKT 257
+G AGP+ G P + G PG++ G+
Sbjct: 1244 GPVG--PAGPA--GKPGPD------------GLRGLPGSV---------------GQQGR 1272
Query: 258 PPFSQEVDDPHALSSPFFPKQLGSLSLELPARLPTRCLPSPPRSLVAPSESGSAGRRGGT 317
P + + P + P P G + + P + P E G G RG
Sbjct: 1273 PGATGQAGPPGPVGPPGLPGLRGDAGAK-----GEKGHPGLIGLIGPPGEQGEKGDRGLP 1327
Query: 318 NGVATPREKLGGKRGVGRKGQGTRLGAPHSLPPPPPFRTGRGEGGGGGSRADVTAGRARP 377
+P +K G+ G+ G P LP P + +G G GG + + G P
Sbjct: 1328 GPQGSPGQK--GEMGIPGASGPIGPGGPPGLPGPAGPKGAKGATGPGGPKGE--KGVQGP 1383
Query: 378 RRRRWEPLRAQRSGARPGAPAPPLPCLPPAAV 409
PG P PP + P +
Sbjct: 1384 ----------------PGHPGPPGEVIQPLPI 1399
>gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein [Homo
sapiens]
Length = 1736
Score = 52.0 bits (123), Expect = 1e-06
Identities = 95/344 (27%), Positives = 118/344 (34%), Gaps = 57/344 (16%)
Query: 140 GAEGKGGG--PQALGRGRRVNGPQGPDRWPNGFRPARQRRTRRPARALNSGQWSPGE-GR 196
GA+G GG P R + GPQGP+ +P P P G PG G+
Sbjct: 859 GAKGTSGGDGPHGPPGERGLPGPQGPNGFPGPKGP--------PGPPGKDG--LPGHPGQ 908
Query: 197 RAALGLE-----EAGPSLEGIPSSEWDTFSRDKRSLLSSHGSPGTIQSSVDIPSLTNTCA 251
R +G + P + G + +T +R G PG +P
Sbjct: 909 RGEVGFQGKTGPPGPPGVVGPQGAAGETGPMGERGHPGPPGPPG----EQGLPGTAGKEG 964
Query: 252 GGKDKTPPFSQEVDDPHALSSPFFPKQLGSLSLELPARLPTRCLPS-PPRSLVAPSESGS 310
D PP + D P L FP + G L PS PP +P E G+
Sbjct: 965 TKGDPGPPGAPGKDGPAGLRG--FPGERGLPGTAGGPGLKGNEGPSGPPGPAGSPGERGA 1022
Query: 311 AGRRG--GTNGVATPREKLG--GKRGV-GRKGQGTRLG-----APHSLPPPPPFRTGRGE 360
AG G G G P+ G G++GV G KG G P LP P GE
Sbjct: 1023 AGSGGPIGPPGRPGPQGPPGAAGEKGVPGEKGPIGPTGRDGVQGPVGLPGPAGPPGVAGE 1082
Query: 361 GGGGGSRADVTAGRARPRRRRWEPLRAQRSGARPGAPAPPLPC-LPPAAVCHALAGAGAP 419
G G D + + P PG P P P P AA GA P
Sbjct: 1083 DGDKGEVGDPGQKGTKGNKGEHGP---------PGPPGPIGPVGQPGAAGADGEPGARGP 1133
Query: 420 GGRLELGLSPGTRLIRGGGAAVPTAAPPAPLPRWGPGPLPGPTG 463
G GTR G PP P+ G LPGP+G
Sbjct: 1134 QGHFGAKGDEGTRGFNG---------PPGPIGLQG---LPGPSG 1165
Score = 48.5 bits (114), Expect = 1e-05
Identities = 57/192 (29%), Positives = 70/192 (36%), Gaps = 25/192 (13%)
Query: 298 PPRSLVAPSESGSAGRRGGTNGVATPREKLGGKRGVGRKGQGTRLG--------APHSLP 349
PP P ESGS G +G GV PR + G K G+ G+ G P P
Sbjct: 1208 PPGEKGEPGESGSPGIQGEP-GVKGPRGERGEKGESGQPGEPGPPGPKGPTGDDGPKGNP 1266
Query: 350 PPPPFRTGRGEGGGGGSRADVTAGRARPRRRRWEPLRAQRSGARPGAPAPPLPCLPPAAV 409
P F G G GG R G R EP +PG+P P PP +
Sbjct: 1267 GPVGFPGDPGPPGEGGPRGQ--DGAKGDRGEDGEP-------GQPGSPGPTGENGPPGPL 1317
Query: 410 CHALAGAGAPGGRLELGLSPGTRLIRGGGAAVPTAAPPAPLPRWGPGPLPGPTGLFDL-- 467
AG+PG G + +G A+ P+ GP PGP GL L
Sbjct: 1318 GKR-GPAGSPGSEGR----QGGKGAKGDPGAIGAPGKTGPVGPAGPAGKPGPDGLRGLPG 1372
Query: 468 SVGVSAASSSLG 479
SVG + G
Sbjct: 1373 SVGQQGRPGATG 1384
Score = 46.2 bits (108), Expect = 7e-05
Identities = 96/383 (25%), Positives = 129/383 (33%), Gaps = 80/383 (20%)
Query: 112 QSETQITPA-GGPAAFCDSTAESKRQLRVGAEGKGGGPQALGRGRRVNGPQGPDRWPNGF 170
+ ET++ PA A + A R G +G+ G P L G V GP GP
Sbjct: 355 REETELGPALSAETAHSGAAAHGPR----GLKGEKGEPAVLEPGMLVEGPPGP------- 403
Query: 171 RPARQRRTRRPARALNSGQWSPGEGRRAALGLEEAGPSLEGIPSSEWDTFSR---DKRSL 227
EG +G P ++G P D R + L
Sbjct: 404 -----------------------EGPAGLIG----PPGIQGNPGPVGDPGERGPPGRAGL 436
Query: 228 LSSHGSPGTIQSSVDIPSLTNTCAGGKDKTPPFSQEVDDPHALSSPFFPKQLGSLSLE-L 286
S G+PG +S+ +P +GG DK P + + A+ Q L+L
Sbjct: 437 PGSDGAPGPPGTSLMLPFRFG--SGGGDKGPVVAAQEAQAQAI------LQQARLALRGP 488
Query: 287 PARLPTRCLPSP---PRSLVAPSESGSAGRRG--GTNGVATPREKLGGKRGVGRKGQGTR 341
P + P P P S ESG G +G G G+ P K G + G G
Sbjct: 489 PGPMGYTGRPGPLGQPGSPGLKGESGDLGPQGPRGPQGLTGPPGKAGRRGRAGADGARGM 548
Query: 342 LGAP--------HSLPPPPPFRTGRGEGGG---------GGSRADVTAGRARPRRRRWE- 383
G P LP P + RG+ G G R D G PR E
Sbjct: 549 PGDPGVKGDRGFDGLPGLPGEKGHRGDTGAQGLPGPPGEDGERGD--DGEIGPRGLPGES 606
Query: 384 -PLRAQRSGARPGAPAPP--LPCLPPAAVCHALAGAGAPGGRLELGLSPGTRLIRGGGAA 440
P PG P PP P +L G PG + G +PGT+ + G A
Sbjct: 607 GPRGLLGPKGPPGIPGPPGVRGMDGPQGPKGSLGPQGEPGPPGQQG-TPGTQGLPGPQGA 665
Query: 441 VPTAAPPAPLPRWGPGPLPGPTG 463
+ P + G +PG G
Sbjct: 666 IGPHGEKGPQGKPGLPGMPGSDG 688
Score = 39.3 bits (90), Expect = 0.008
Identities = 56/196 (28%), Positives = 69/196 (35%), Gaps = 34/196 (17%)
Query: 292 TRCLPSPPRSLVAPSESGSAGRRGGTNGVATPREKLGGKRGVGRKGQGTRLGAPHSLPPP 351
TR PP + G +G +G T V +G G +G GA PP
Sbjct: 1145 TRGFNGPPGPIGLQGLPGPSGEKGETGDVGP----MGPPGPPGPRGPAGPNGADGPQGPP 1200
Query: 352 -------PPFRTGR-GEGGGGGSRADVTAGRARPRRRRWEPLRAQRSGARPGAPAPPLPC 403
PP G GE G G + + G PR R E + +PG P PP P
Sbjct: 1201 GGVGNLGPPGEKGEPGESGSPGIQGE--PGVKGPRGERGE----KGESGQPGEPGPPGPK 1254
Query: 404 LP-----PAAVCHALAGAGAPGGRLELGL--SPGTRLIRGG-------GAAVPTA--APP 447
P P + G PG E G G + RG G+ PT PP
Sbjct: 1255 GPTGDDGPKGNPGPVGFPGDPGPPGEGGPRGQDGAKGDRGEDGEPGQPGSPGPTGENGPP 1314
Query: 448 APLPRWGPGPLPGPTG 463
PL + GP PG G
Sbjct: 1315 GPLGKRGPAGSPGSEG 1330
Score = 38.5 bits (88), Expect = 0.014
Identities = 62/224 (27%), Positives = 78/224 (34%), Gaps = 59/224 (26%)
Query: 296 PSPPRSLVAPSESGSAGRRG--------GTNGVATPREKLGGKRGVGRKGQGTRLGAP-- 345
P PP + G G G G G PR + G K G G+ + G+P
Sbjct: 1248 PGPPGPKGPTGDDGPKGNPGPVGFPGDPGPPGEGGPRGQDGAKGDRGEDGEPGQPGSPGP 1307
Query: 346 --HSLPPPPPFRTG-------RGEGGGGGSRADV----------------TAGRARPRRR 380
+ PP P + G G GG G++ D AG+ P
Sbjct: 1308 TGENGPPGPLGKRGPAGSPGSEGRQGGKGAKGDPGAIGAPGKTGPVGPAGPAGKPGPDGL 1367
Query: 381 RWEPLRAQRSGARPGAPA---PPLPCLPPAAVCHALAG-AGAPGGRLELGL-----SPGT 431
R P + G RPGA PP P PP L G AGA G + GL PG
Sbjct: 1368 RGLPGSVGQQG-RPGATGQAGPPGPVGPPGLP--GLRGDAGAKGEKGHPGLIGLIGPPGE 1424
Query: 432 RLIRGG-GAAVPTAAP-----------PAPLPRWGPGPLPGPTG 463
+ +G G P +P P+ GP LPGP G
Sbjct: 1425 QGEKGDRGLPGPQGSPGQKGEMGIPGASGPIGPGGPPGLPGPAG 1468
Score = 37.0 bits (84), Expect = 0.041
Identities = 87/341 (25%), Positives = 115/341 (33%), Gaps = 63/341 (18%)
Query: 138 RVGAEGKGGGPQALGRGRRVNGPQGPDRWPNGFRPARQRRTRRPARALNSGQWSPGE--- 194
R G G+ G P G + GPQGP R P G + RR + + PG+
Sbjct: 497 RPGPLGQPGSPGLKGESGDL-GPQGP-RGPQGLTGPPGKAGRRGRAGADGARGMPGDPGV 554
Query: 195 -GRRAALGLEEAGPSLEGIPSSEWDTFSRDKRSLLSSHGSPGTIQSSVDIPSLTNTCAGG 253
G R GL P L G DT + G PG G
Sbjct: 555 KGDRGFDGL----PGLPGEKGHRGDT---------GAQGLPGP---------------PG 586
Query: 254 KDKTPPFSQEVDDPHALSSPFFPKQL----GSLSLELPARLPTRCLPSPPRSLVAPS-ES 308
+D E+ P L P+ L G + P + P P+ + P E
Sbjct: 587 EDGERGDDGEIG-PRGLPGESGPRGLLGPKGPPGIPGPPGVRGMDGPQGPKGSLGPQGEP 645
Query: 309 GSAGRRG--GTNGVATPREKLGGKRGVGRKGQGTRLGAPHSLPPPP-PFRTGRG--EGGG 363
G G++G GT G+ P+ +G G +G+ G P S PP P + G +G
Sbjct: 646 GPPGQQGTPGTQGLPGPQGAIGPHGEKGPQGKPGLPGMPGSDGPPGHPGKEGPPGTKGNQ 705
Query: 364 GGSRADVTAGRARPRRRRWEPLRAQRSGARPGAPAPPLPCLPPAAVCHALAGAGAPGGRL 423
G S G PR + G + P G G R
Sbjct: 706 GPSGPQGPLGYPGPRGVKGVDGIRGLKGHKGEKGEDGFPGFK--------GDIGVKGDRG 757
Query: 424 ELGLSPGTRLIRGGGAAVPTAAPPAPLPRWGPGPLPGPTGL 464
E+G+ PG+R G P P R GP PGP GL
Sbjct: 758 EVGV-PGSRGEDG---------PEGPKGRTGPTGDPGPPGL 788
Score = 31.6 bits (70), Expect = 1.7
Identities = 60/272 (22%), Positives = 89/272 (32%), Gaps = 64/272 (23%)
Query: 140 GAEGKGGGPQALGRGRRVNGPQGP--DRWPNGFRPARQRRTRRPARALNSGQWSPGEGRR 197
G G+ G P G NGP GP R P G + R+ + A+ +PG +
Sbjct: 1297 GEPGQPGSPGPTGE----NGPPGPLGKRGPAGSPGSEGRQGGKGAKGDPGAIGAPG--KT 1350
Query: 198 AALGLEEAGPSLEGIPSSEWDTFSRDKRSLLSSHGSPGTIQSSVDIPSLTNTCAGGKDKT 257
+G AGP+ G P + G PG++ G+
Sbjct: 1351 GPVG--PAGPA--GKPGPD------------GLRGLPGSV---------------GQQGR 1379
Query: 258 PPFSQEVDDPHALSSPFFPKQLGSLSLELPARLPTRCLPSPPRSLVAPSESGSAGRRGGT 317
P + + P + P P G + + P + P E G G RG
Sbjct: 1380 PGATGQAGPPGPVGPPGLPGLRGDAGAK-----GEKGHPGLIGLIGPPGEQGEKGDRGLP 1434
Query: 318 NGVATPREKLGGKRGVGRKGQGTRLGAPHSLPPPPPFRTGRGEGGGGGSRADVTAGRARP 377
+P +K G+ G+ G P LP P + +G G GG + + G P
Sbjct: 1435 GPQGSPGQK--GEMGIPGASGPIGPGGPPGLPGPAGPKGAKGATGPGGPKGE--KGVQGP 1490
Query: 378 RRRRWEPLRAQRSGARPGAPAPPLPCLPPAAV 409
PG P PP + P +
Sbjct: 1491 ----------------PGHPGPPGEVIQPLPI 1506
>gi|170650694 centaurin, gamma 1 isoform PIKE-L [Homo sapiens]
Length = 1192
Score = 50.8 bits (120), Expect = 3e-06
Identities = 93/335 (27%), Positives = 118/335 (35%), Gaps = 81/335 (24%)
Query: 181 PARALNSGQWSPGEGRRAALGLEEAGPSLEGIPSSEWDTFSRDKRSLLSSHGSPGTIQSS 240
PA A + SP GRR +L GP L G LS PG +S
Sbjct: 95 PAPASPARPVSPAPGRRLSLWAVPPGPPLSG---------------GLSPDPKPGGAPTS 139
Query: 241 VDIPSLTNTCAGGKDKTPPFSQEVDDPHALSSPFFPKQLGSLSLELPARLPTRCLPSP-P 299
P L++ GG + P + SSP G+ S L P P+P P
Sbjct: 140 SRRPLLSSPSWGGPE---PEGRAGGGIPGSSSP----HPGTGSRRLKVAPPP---PAPKP 189
Query: 300 RSLVAPSESGSAGRRGGTNGVATPREKLGGKRGVGRKGQGTRLGAPHSLPPPPPFRTGRG 359
V S + + G +G + ++ P + GK V KG + G S+
Sbjct: 190 CKTVTTSGAKAGGGKGAGSRLSWPESE--GKPRV--KGSKSSAGTGASVSA----AATAA 241
Query: 360 EGGGGGSRADVTAG-------RARPRRRRWEPLRAQRSGARPGAPA--PP---LPCLPPA 407
GGGGS A + G R + R+ + S PG PA PP LP P
Sbjct: 242 AAGGGGSTASTSGGVGAGAGARGKLSPRKGKSKTLDNSDLHPGPPAGSPPPLTLPPTPSP 301
Query: 408 AVCHALAGAGAPGGRLELGL---SPGTRLIRGGGAA----------------VPTAAPPA 448
A A A PG + L +PG + R GG A T PP
Sbjct: 302 ATAVTAASAQPPGPAPPITLEPPAPGLKRGREGGRASTRDRKMLKFISGIFTKSTGGPP- 360
Query: 449 PLPRWGPGPLPGPTGLFDLSVGVSAASSSLGSTEL 483
G GPLPGP L SS GS EL
Sbjct: 361 -----GSGPLPGPPSL----------SSGSGSREL 380
Score = 42.0 bits (97), Expect = 0.001
Identities = 45/156 (28%), Positives = 55/156 (35%), Gaps = 31/156 (19%)
Query: 347 SLPPPPPFRTGRGEGGGGGSRADV-----TAGRARPRRRRWEPLRAQR-------SGARP 394
S+PPPPP + G G ++ G P ++R E L ++ S A
Sbjct: 26 SVPPPPPSPSAAAAGAAGARGSETGDPGSPRGAEEPGKKRHERLFHRQDALWISTSSAGT 85
Query: 395 GAPAPPLPCLPPAAVCHALAGAGAPGGRLELGLSPGTRLIRGGGAAVPTAAPPAPLPRWG 454
G PP L PA A + APG RL L A PP P G
Sbjct: 86 GGAEPP--ALSPAPASPARPVSPAPGRRLSLW-----------------AVPPGPPLSGG 126
Query: 455 PGPLPGPTGLFDLSVGVSAASSSLGSTELEKNMGSG 490
P P P G S +S S G E E G G
Sbjct: 127 LSPDPKPGGAPTSSRRPLLSSPSWGGPEPEGRAGGG 162
>gi|93141049 collagen, type XII, alpha 1 short isoform precursor [Homo
sapiens]
Length = 1899
Score = 50.8 bits (120), Expect = 3e-06
Identities = 73/251 (29%), Positives = 90/251 (35%), Gaps = 55/251 (21%)
Query: 255 DKTPPFSQEVDDPHALSSPFFPKQLGSLSLE-------LPARLPTRCLPSPPRSLVAPSE 307
D PP Q P + P + G ++ LP R T LP PP + P +
Sbjct: 1617 DIGPPGPQGPPGPQGPNGLSIPGEQGRQGMKGDAGEPGLPGRTGTPGLPGPPGPMGPPGD 1676
Query: 308 SGSAGRRG--GTNGVATPREKLGGKRGVGRKGQGTRLGAPHSLPPPPPFRTGRGEGGGGG 365
G G+ G G G P G G G+ + G H P P +GE G G
Sbjct: 1677 RGFTGKDGAMGPRGPPGPPGSPGSPGVTGPSGKPGKPG-DHGRPGPSGL---KGEKGDRG 1732
Query: 366 SRADVTAGRARPRR----------RRWE------PLRAQRSGARPGAPAPPLPCLPPAAV 409
A RA R+ R+ P Q S +PG P PP P P +A
Sbjct: 1733 DIASQNMMRAVARQVCEQLISGQMNRFNQMLNQIPNDYQSSRNQPGPPGPPGP--PGSA- 1789
Query: 410 CHALAGAGAPGGRL-------------ELGLSPGTRLIRGGGAAVPTAAPPAPLP----R 452
G PGGR E GL PG + RG G++ P P P P R
Sbjct: 1790 --GARGEPGPGGRPGFPGTPGMQGPPGERGL-PGEKGERGTGSSGPRGLPGPPGPQGESR 1846
Query: 453 WGPGPLPGPTG 463
GP PG TG
Sbjct: 1847 TGP---PGSTG 1854
Score = 41.6 bits (96), Expect = 0.002
Identities = 50/170 (29%), Positives = 59/170 (34%), Gaps = 31/170 (18%)
Query: 296 PSPPRSLVAPSESGSAGRRGGTNGVATPREKLGGKRGVGRKGQGTRLGAPHSLPPPPPFR 355
P PP P G G RG + + P G RG +G P PP
Sbjct: 1585 PGPPGPAGGPGAKGPRGERGISGAIGPP-----GPRG--------DIGPPGPQGPP---- 1627
Query: 356 TGRGEGGGGGSRADVTAGRARPRRRRWEPLRAQRSGARPGAPAPPLPCLPPA-AVCHALA 414
G G G GR + EP R+G PG P PP P PP
Sbjct: 1628 ---GPQGPNGLSIPGEQGRQGMKGDAGEPGLPGRTGT-PGLPGPPGPMGPPGDRGFTGKD 1683
Query: 415 GAGAPGGRLELGLSPGTRLIRGGGAAVPTAAPPAPLPRWGPGPLPGPTGL 464
GA P G SPG+ + G P+ P P G PGP+GL
Sbjct: 1684 GAMGPRGPPGPPGSPGSPGVTG-----PSGKPGKP----GDHGRPGPSGL 1724
>gi|93141047 collagen, type XII, alpha 1 long isoform precursor [Homo
sapiens]
Length = 3063
Score = 50.8 bits (120), Expect = 3e-06
Identities = 73/251 (29%), Positives = 90/251 (35%), Gaps = 55/251 (21%)
Query: 255 DKTPPFSQEVDDPHALSSPFFPKQLGSLSLE-------LPARLPTRCLPSPPRSLVAPSE 307
D PP Q P + P + G ++ LP R T LP PP + P +
Sbjct: 2781 DIGPPGPQGPPGPQGPNGLSIPGEQGRQGMKGDAGEPGLPGRTGTPGLPGPPGPMGPPGD 2840
Query: 308 SGSAGRRG--GTNGVATPREKLGGKRGVGRKGQGTRLGAPHSLPPPPPFRTGRGEGGGGG 365
G G+ G G G P G G G+ + G H P P +GE G G
Sbjct: 2841 RGFTGKDGAMGPRGPPGPPGSPGSPGVTGPSGKPGKPG-DHGRPGPSGL---KGEKGDRG 2896
Query: 366 SRADVTAGRARPRR----------RRWE------PLRAQRSGARPGAPAPPLPCLPPAAV 409
A RA R+ R+ P Q S +PG P PP P P +A
Sbjct: 2897 DIASQNMMRAVARQVCEQLISGQMNRFNQMLNQIPNDYQSSRNQPGPPGPPGP--PGSA- 2953
Query: 410 CHALAGAGAPGGRL-------------ELGLSPGTRLIRGGGAAVPTAAPPAPLP----R 452
G PGGR E GL PG + RG G++ P P P P R
Sbjct: 2954 --GARGEPGPGGRPGFPGTPGMQGPPGERGL-PGEKGERGTGSSGPRGLPGPPGPQGESR 3010
Query: 453 WGPGPLPGPTG 463
GP PG TG
Sbjct: 3011 TGP---PGSTG 3018
Score = 41.6 bits (96), Expect = 0.002
Identities = 50/170 (29%), Positives = 59/170 (34%), Gaps = 31/170 (18%)
Query: 296 PSPPRSLVAPSESGSAGRRGGTNGVATPREKLGGKRGVGRKGQGTRLGAPHSLPPPPPFR 355
P PP P G G RG + + P G RG +G P PP
Sbjct: 2749 PGPPGPAGGPGAKGPRGERGISGAIGPP-----GPRG--------DIGPPGPQGPP---- 2791
Query: 356 TGRGEGGGGGSRADVTAGRARPRRRRWEPLRAQRSGARPGAPAPPLPCLPPA-AVCHALA 414
G G G GR + EP R+G PG P PP P PP
Sbjct: 2792 ---GPQGPNGLSIPGEQGRQGMKGDAGEPGLPGRTGT-PGLPGPPGPMGPPGDRGFTGKD 2847
Query: 415 GAGAPGGRLELGLSPGTRLIRGGGAAVPTAAPPAPLPRWGPGPLPGPTGL 464
GA P G SPG+ + G P+ P P G PGP+GL
Sbjct: 2848 GAMGPRGPPGPPGSPGSPGVTG-----PSGKPGKP----GDHGRPGPSGL 2888
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 50.4 bits (119), Expect = 4e-06
Identities = 88/343 (25%), Positives = 105/343 (30%), Gaps = 49/343 (14%)
Query: 140 GAEGKGGGPQALGRGRRV--NGPQGPDRWPNGFRPARQRRTRRPARALNSGQWSPGEGRR 197
GA+G+ G P G NG GP P G R R A PG
Sbjct: 297 GAKGEAGAPGVKGESGSPGENGSPGP-MGPRGLPGERGRTGPAGAAGARGNDGQPGPAGP 355
Query: 198 AALGLEEAGPSLEGIPSSEWD---TFSRDKRSLLSSHGSPGTIQSSVDIPSLTNTCAGGK 254
GP G P ++ + T +R G PGT S + N G
Sbjct: 356 PGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNP---GT 412
Query: 255 DKTPPFSQEVDDPHALSSPFFPKQLGSLSLELPARLPTRCLPSPPRSLVAP-------SE 307
D P P +P FP G P P+ P E
Sbjct: 413 DGIPGAKGSAGAPGIAGAPGFPGPRG---------------PPGPQGATGPLGPKGQTGE 457
Query: 308 SGSAGRRG--GTNGVATPREKLGGKRGVGRKGQGTRLGAPHSLPP--PPPFRTGRGEGGG 363
G AG +G G G P G G +G+ G P + P PP R G G
Sbjct: 458 PGIAGFKGEQGPKGEPGPAGPQGAPGPAGEEGKRGARGEPGGVGPIGPPGERGAPGNRGF 517
Query: 364 GGSRADVTAGRARPRRRRWEPLRAQRSGARPGAPAPPLPCLPPAAVCHALAGAGAPGGRL 423
G D AG R A GA P P LP A G P G++
Sbjct: 518 PGQ--DGLAGPKGAPGERGPSGLAGPKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKV 575
Query: 424 ELGLSPGTRLIRGGGAAVPTAAPPAPL-PRWGPGPL--PGPTG 463
+PG G PP P R PG + PGP G
Sbjct: 576 GPSGAPGEDGRPG---------PPGPQGARGQPGVMGFPGPKG 609
Score = 41.6 bits (96), Expect = 0.002
Identities = 58/181 (32%), Positives = 63/181 (34%), Gaps = 28/181 (15%)
Query: 296 PSPPRSLVAPSESGSAGRRG--GTNGVATPREKLGGKRGVGRKGQGTRLGAPHSLPPPPP 353
P P AP G G G G G P G GR G G P PP P
Sbjct: 863 PGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPGPPGP 922
Query: 354 F-----RTGRGEGGGGGSRADV-TAGRARPRRRRWEPLRAQRSGARPGAPAPPLPCLPPA 407
+ RG+ G G + G A P + EP SGA G P P
Sbjct: 923 SGKDGPKGARGDSGPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAE-GPPGP-------- 973
Query: 408 AVCHALAG----AGAPGGRLELGLSPGTRLIRGGGAAVPTAAPPAPLPRWGPGPLPGPTG 463
LAG G PG R E G PG L G AP A R PGP+ GP G
Sbjct: 974 ---QGLAGQRGIVGLPGQRGERGF-PG--LPGPSGEPGKQGAPGASGDRGPPGPV-GPPG 1026
Query: 464 L 464
L
Sbjct: 1027 L 1027
Score = 40.8 bits (94), Expect = 0.003
Identities = 98/401 (24%), Positives = 120/401 (29%), Gaps = 76/401 (18%)
Query: 122 GPAAFCDSTAESKRQLRVGAEGKGGGPQALGRGRRVNGPQGPDRWPNGFRPARQRRTR-- 179
GPA F + G +G+ G G GPQGP P P +
Sbjct: 831 GPAGFAGPPGADGQPGAKGEQGEAGQKGDAG----APGPQGPSGAPGPQGPTGVTGPKGA 886
Query: 180 RPARALNSGQWSPGEGRRAALGLEEAGPSLEGIPSSEWDTFSRDKRSLLSSHGSPGTIQS 239
R A+ PG R P G P + R G PG
Sbjct: 887 RGAQGPPGATGFPGAAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARG---DSGPPGRAGE 943
Query: 240 SVDIPSLTNTCAGGKDKTPPFSQEVDDPHALSSPFFPKQLGSLS--LELPARLPTRCLPS 297
P L +K P D P P P+ L + LP + R P
Sbjct: 944 ----PGLQGPAGPPGEKGEPGD---DGPSGAEGPPGPQGLAGQRGIVGLPGQRGERGFPG 996
Query: 298 PPRSLVAPSESGSAGRRG--------GTNGVATPREKLG--------------GKRGV-G 334
P P + G+ G G G G+ P + G G GV G
Sbjct: 997 LPGPSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGSPGADGPPGRDGAAGVKG 1056
Query: 335 RKGQGTRLGAPHSLPPP----PPFRTG----RGEGGGGGSRADVTAGRAR----PRRRRW 382
+G+ +GAP + PP P TG RGE G G AR P+ R
Sbjct: 1057 DRGETGAVGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGPMGPSGPAGARGIQGPQGPRG 1116
Query: 383 EPLRAQRSGAR-----------PGAPAPPLPCLPPAAVCHA-LAGAGAPGGRLELGLSPG 430
+ A G R G P PP P A A +G P G + G
Sbjct: 1117 DKGEAGEPGERGLKGHRGFTGLQGLPGPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDG 1176
Query: 431 TRLIRG----------GGAAVPTAAPPAPLPRWGPGPLPGP 461
I G G P P P P PGP PGP
Sbjct: 1177 ANGIPGPIGPPGPRGRSGETGPAGPPGNPGPPGPPGP-PGP 1216
Score = 39.3 bits (90), Expect = 0.008
Identities = 86/347 (24%), Positives = 104/347 (29%), Gaps = 69/347 (19%)
Query: 140 GAEGKGGGPQALGRGRRVNGPQGPDRWPNGFRPARQRRTRRPARALNSGQWSPGEGRRAA 199
GA G G P G GP GP P G R + + L PGEG +
Sbjct: 624 GAPGLRGLPGKDGETGAA-GPPGP-AGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPG 681
Query: 200 LGLEEAGPSLEGIPSSEWDTFSRDKRSLLSSHGSPGT--IQSSVDIPSLTNTCAGGKDKT 257
++ P G P R +R GSPG +Q +P T
Sbjct: 682 ---DQGVPGEAGAPGL---VGPRGERGFPGERGSPGAQGLQGPRGLPGTPGT-------- 727
Query: 258 PPFSQEVDDPHALSSPFFPKQLGSLSLELPARLPTRCLPSPPRSLVAPSESGSAGRRGGT 317
D P S P PP + P G G RG
Sbjct: 728 -------DGPKGASGP----------------------AGPPGAQGPPGLQGMPGERGAA 758
Query: 318 NGVATPREKLG-----GKRGVGRKGQGTRLGAPHSLPPPPPFRTGRGEGGGGGSRADVTA 372
G+A P+ G G G K G L P P P +GE G G A
Sbjct: 759 -GIAGPKGDRGDVGEKGPEGAPGKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGSAGA 817
Query: 373 GRARPRRRRWEPLRAQRSGARPGAPAPP--------LPCLPPAAVCHALAGAGAPGGRLE 424
A R P PGA P A +GAPG +
Sbjct: 818 RGAPGERGETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGP 877
Query: 425 LGLS--PGTRLIRG--GGAAVPTAA----PPAPLPRWGPGPLPGPTG 463
G++ G R +G G P AA PP GP PGP+G
Sbjct: 878 TGVTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPGPPGPSG 924
Score = 33.9 bits (76), Expect = 0.35
Identities = 61/241 (25%), Positives = 79/241 (32%), Gaps = 34/241 (14%)
Query: 267 PHALSSPFFPKQLGSLSLELPARLPTRCLPSPPRSLVAPSESGSAGRRG--GTNGVATPR 324
P P P L + S + P + P + +V P G G +G G G R
Sbjct: 81 PFGECCPICPTDLATASGQ-PGPKGQKGEPGDIKDIVGPK--GPPGPQGPAGEQGPRGDR 137
Query: 325 EKLGGKRGVGRKGQGTRLGAPHSLPPPPPFRTGRGEGGGGGSRADVTAGRARPRRRRWEP 384
G K G +G+ G P + PP P G GG A + G E
Sbjct: 138 GDKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGGNFAAQMAGGFD-------EK 190
Query: 385 LRAQRSGARPGAPAPPLPCLPPAAVCHALAGAGAPGGRLELGLSPGTRLIRGGGAAVPTA 444
+ G G P P PP AGAPG + G +PG G +
Sbjct: 191 AGGAQLGVMQGPMGPMGPRGPPGP-------AGAPGPQGFQG-NPGEPGEPGVSGPMGPR 242
Query: 445 APPAPLPRWG-------PGPL-----PGPTGL--FDLSVGVSAASSSLGSTELEKNMGSG 490
PP P + G PG PGP G F + G+ G L+ G
Sbjct: 243 GPPGPPGKPGDDGEAGKPGKAGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKGEA 302
Query: 491 G 491
G
Sbjct: 303 G 303
Score = 32.7 bits (73), Expect = 0.77
Identities = 39/127 (30%), Positives = 44/127 (34%), Gaps = 17/127 (13%)
Query: 305 PSESGSAGRRG--GTNGVATPREKLGGKRGVGRKGQGTRLGAPHSLPPPPPFRTGRGEGG 362
P E G G RG G G+ P G + G G G P + P G+ G
Sbjct: 1124 PGERGLKGHRGFTGLQGLPGPPGPSGDQGASGPAGPSGPRGPPGPVGPS-------GKDG 1176
Query: 363 GGGSRADVTAGRARPRRRRWEPLRAQRSGARPGAPAPPLPCLPPAAVCHALAGAGAPGGR 422
G + G PR R E A PG P PP P PP A AG G
Sbjct: 1177 ANGIPGPI--GPPGPRGRSGETGPA----GPPGNPGPPGPPGPPGPGIDMSAFAGL--GP 1228
Query: 423 LELGLSP 429
E G P
Sbjct: 1229 REKGPDP 1235
Score = 29.6 bits (65), Expect = 6.5
Identities = 30/101 (29%), Positives = 42/101 (41%), Gaps = 14/101 (13%)
Query: 296 PSPPRSLVAPSESGSAGRRGGTNGVATPREKLGGKRGVGRKGQGTRLGAPHSLPPPPPFR 355
PS PR P G +G+ G NG+ P +G GR G+ G P + PP
Sbjct: 1159 PSGPRG--PPGPVGPSGK-DGANGIPGP---IGPPGPRGRSGETGPAGPPGNPGPP---- 1208
Query: 356 TGRGEGGGGGSRADVTA-GRARPRRRRWEPLRAQRSGARPG 395
G G G D++A PR + +PL+ R+ G
Sbjct: 1209 ---GPPGPPGPGIDMSAFAGLGPREKGPDPLQYMRADQAAG 1246
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 50.4 bits (119), Expect = 4e-06
Identities = 88/343 (25%), Positives = 105/343 (30%), Gaps = 49/343 (14%)
Query: 140 GAEGKGGGPQALGRGRRV--NGPQGPDRWPNGFRPARQRRTRRPARALNSGQWSPGEGRR 197
GA+G+ G P G NG GP P G R R A PG
Sbjct: 228 GAKGEAGAPGVKGESGSPGENGSPGP-MGPRGLPGERGRTGPAGAAGARGNDGQPGPAGP 286
Query: 198 AALGLEEAGPSLEGIPSSEWD---TFSRDKRSLLSSHGSPGTIQSSVDIPSLTNTCAGGK 254
GP G P ++ + T +R G PGT S + N G
Sbjct: 287 PGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNP---GT 343
Query: 255 DKTPPFSQEVDDPHALSSPFFPKQLGSLSLELPARLPTRCLPSPPRSLVAP-------SE 307
D P P +P FP G P P+ P E
Sbjct: 344 DGIPGAKGSAGAPGIAGAPGFPGPRG---------------PPGPQGATGPLGPKGQTGE 388
Query: 308 SGSAGRRG--GTNGVATPREKLGGKRGVGRKGQGTRLGAPHSLPP--PPPFRTGRGEGGG 363
G AG +G G G P G G +G+ G P + P PP R G G
Sbjct: 389 PGIAGFKGEQGPKGEPGPAGPQGAPGPAGEEGKRGARGEPGGVGPIGPPGERGAPGNRGF 448
Query: 364 GGSRADVTAGRARPRRRRWEPLRAQRSGARPGAPAPPLPCLPPAAVCHALAGAGAPGGRL 423
G D AG R A GA P P LP A G P G++
Sbjct: 449 PGQ--DGLAGPKGAPGERGPSGLAGPKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKV 506
Query: 424 ELGLSPGTRLIRGGGAAVPTAAPPAPL-PRWGPGPL--PGPTG 463
+PG G PP P R PG + PGP G
Sbjct: 507 GPSGAPGEDGRPG---------PPGPQGARGQPGVMGFPGPKG 540
Score = 41.6 bits (96), Expect = 0.002
Identities = 58/181 (32%), Positives = 63/181 (34%), Gaps = 28/181 (15%)
Query: 296 PSPPRSLVAPSESGSAGRRG--GTNGVATPREKLGGKRGVGRKGQGTRLGAPHSLPPPPP 353
P P AP G G G G G P G GR G G P PP P
Sbjct: 794 PGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPGPPGP 853
Query: 354 F-----RTGRGEGGGGGSRADV-TAGRARPRRRRWEPLRAQRSGARPGAPAPPLPCLPPA 407
+ RG+ G G + G A P + EP SGA G P P
Sbjct: 854 SGKDGPKGARGDSGPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAE-GPPGP-------- 904
Query: 408 AVCHALAG----AGAPGGRLELGLSPGTRLIRGGGAAVPTAAPPAPLPRWGPGPLPGPTG 463
LAG G PG R E G PG L G AP A R PGP+ GP G
Sbjct: 905 ---QGLAGQRGIVGLPGQRGERGF-PG--LPGPSGEPGKQGAPGASGDRGPPGPV-GPPG 957
Query: 464 L 464
L
Sbjct: 958 L 958
Score = 40.8 bits (94), Expect = 0.003
Identities = 98/401 (24%), Positives = 120/401 (29%), Gaps = 76/401 (18%)
Query: 122 GPAAFCDSTAESKRQLRVGAEGKGGGPQALGRGRRVNGPQGPDRWPNGFRPARQRRTR-- 179
GPA F + G +G+ G G GPQGP P P +
Sbjct: 762 GPAGFAGPPGADGQPGAKGEQGEAGQKGDAG----APGPQGPSGAPGPQGPTGVTGPKGA 817
Query: 180 RPARALNSGQWSPGEGRRAALGLEEAGPSLEGIPSSEWDTFSRDKRSLLSSHGSPGTIQS 239
R A+ PG R P G P + R G PG
Sbjct: 818 RGAQGPPGATGFPGAAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARG---DSGPPGRAGE 874
Query: 240 SVDIPSLTNTCAGGKDKTPPFSQEVDDPHALSSPFFPKQLGSLS--LELPARLPTRCLPS 297
P L +K P D P P P+ L + LP + R P
Sbjct: 875 ----PGLQGPAGPPGEKGEPGD---DGPSGAEGPPGPQGLAGQRGIVGLPGQRGERGFPG 927
Query: 298 PPRSLVAPSESGSAGRRG--------GTNGVATPREKLG--------------GKRGV-G 334
P P + G+ G G G G+ P + G G GV G
Sbjct: 928 LPGPSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGSPGADGPPGRDGAAGVKG 987
Query: 335 RKGQGTRLGAPHSLPPP----PPFRTG----RGEGGGGGSRADVTAGRAR----PRRRRW 382
+G+ +GAP + PP P TG RGE G G AR P+ R
Sbjct: 988 DRGETGAVGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGPMGPSGPAGARGIQGPQGPRG 1047
Query: 383 EPLRAQRSGAR-----------PGAPAPPLPCLPPAAVCHA-LAGAGAPGGRLELGLSPG 430
+ A G R G P PP P A A +G P G + G
Sbjct: 1048 DKGEAGEPGERGLKGHRGFTGLQGLPGPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDG 1107
Query: 431 TRLIRG----------GGAAVPTAAPPAPLPRWGPGPLPGP 461
I G G P P P P PGP PGP
Sbjct: 1108 ANGIPGPIGPPGPRGRSGETGPAGPPGNPGPPGPPGP-PGP 1147
Score = 39.3 bits (90), Expect = 0.008
Identities = 86/347 (24%), Positives = 104/347 (29%), Gaps = 69/347 (19%)
Query: 140 GAEGKGGGPQALGRGRRVNGPQGPDRWPNGFRPARQRRTRRPARALNSGQWSPGEGRRAA 199
GA G G P G GP GP P G R + + L PGEG +
Sbjct: 555 GAPGLRGLPGKDGETGAA-GPPGP-AGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPG 612
Query: 200 LGLEEAGPSLEGIPSSEWDTFSRDKRSLLSSHGSPGT--IQSSVDIPSLTNTCAGGKDKT 257
++ P G P R +R GSPG +Q +P T
Sbjct: 613 ---DQGVPGEAGAPGL---VGPRGERGFPGERGSPGAQGLQGPRGLPGTPGT-------- 658
Query: 258 PPFSQEVDDPHALSSPFFPKQLGSLSLELPARLPTRCLPSPPRSLVAPSESGSAGRRGGT 317
D P S P PP + P G G RG
Sbjct: 659 -------DGPKGASGP----------------------AGPPGAQGPPGLQGMPGERGAA 689
Query: 318 NGVATPREKLG-----GKRGVGRKGQGTRLGAPHSLPPPPPFRTGRGEGGGGGSRADVTA 372
G+A P+ G G G K G L P P P +GE G G A
Sbjct: 690 -GIAGPKGDRGDVGEKGPEGAPGKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGSAGA 748
Query: 373 GRARPRRRRWEPLRAQRSGARPGAPAPP--------LPCLPPAAVCHALAGAGAPGGRLE 424
A R P PGA P A +GAPG +
Sbjct: 749 RGAPGERGETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGP 808
Query: 425 LGLS--PGTRLIRG--GGAAVPTAA----PPAPLPRWGPGPLPGPTG 463
G++ G R +G G P AA PP GP PGP+G
Sbjct: 809 TGVTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPGPPGPSG 855
Score = 33.1 bits (74), Expect = 0.59
Identities = 55/212 (25%), Positives = 70/212 (33%), Gaps = 33/212 (15%)
Query: 296 PSPPRSLVAPSESGSAGRRG--GTNGVATPREKLGGKRGVGRKGQGTRLGAPHSLPPPPP 353
P + +V P G G +G G G R G K G +G+ G P + PP P
Sbjct: 40 PGDIKDIVGPK--GPPGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNPGPPGP 97
Query: 354 FRTGRGEGGGGGSRADVTAGRARPRRRRWEPLRAQRSGARPGAPAPPLPCLPPAAVCHAL 413
G GG A + G E + G G P P PP
Sbjct: 98 PGPPGPPGLGGNFAAQMAGGFD-------EKAGGAQLGVMQGPMGPMGPRGPPGP----- 145
Query: 414 AGAGAPGGRLELGLSPGTRLIRGGGAAVPTAAPPAPLPRWG-------PGPL-----PGP 461
AGAPG + G +PG G + PP P + G PG PGP
Sbjct: 146 --AGAPGPQGFQG-NPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGKAGERGPPGP 202
Query: 462 TGL--FDLSVGVSAASSSLGSTELEKNMGSGG 491
G F + G+ G L+ G G
Sbjct: 203 QGARGFPGTPGLPGVKGHRGYPGLDGAKGEAG 234
Score = 32.7 bits (73), Expect = 0.77
Identities = 39/127 (30%), Positives = 44/127 (34%), Gaps = 17/127 (13%)
Query: 305 PSESGSAGRRG--GTNGVATPREKLGGKRGVGRKGQGTRLGAPHSLPPPPPFRTGRGEGG 362
P E G G RG G G+ P G + G G G P + P G+ G
Sbjct: 1055 PGERGLKGHRGFTGLQGLPGPPGPSGDQGASGPAGPSGPRGPPGPVGPS-------GKDG 1107
Query: 363 GGGSRADVTAGRARPRRRRWEPLRAQRSGARPGAPAPPLPCLPPAAVCHALAGAGAPGGR 422
G + G PR R E A PG P PP P PP A AG G
Sbjct: 1108 ANGIPGPI--GPPGPRGRSGETGPA----GPPGNPGPPGPPGPPGPGIDMSAFAGL--GP 1159
Query: 423 LELGLSP 429
E G P
Sbjct: 1160 REKGPDP 1166
Score = 29.6 bits (65), Expect = 6.5
Identities = 30/101 (29%), Positives = 42/101 (41%), Gaps = 14/101 (13%)
Query: 296 PSPPRSLVAPSESGSAGRRGGTNGVATPREKLGGKRGVGRKGQGTRLGAPHSLPPPPPFR 355
PS PR P G +G+ G NG+ P +G GR G+ G P + PP
Sbjct: 1090 PSGPRG--PPGPVGPSGK-DGANGIPGP---IGPPGPRGRSGETGPAGPPGNPGPP---- 1139
Query: 356 TGRGEGGGGGSRADVTA-GRARPRRRRWEPLRAQRSGARPG 395
G G G D++A PR + +PL+ R+ G
Sbjct: 1140 ---GPPGPPGPGIDMSAFAGLGPREKGPDPLQYMRADQAAG 1177
>gi|149158690 HLA-B associated transcript-2 [Homo sapiens]
Length = 2157
Score = 50.1 bits (118), Expect = 5e-06
Identities = 112/482 (23%), Positives = 154/482 (31%), Gaps = 91/482 (18%)
Query: 23 PGGKRGTEIRAVGEQLESWRSWRK-------------DVAGCSSPTPIPEFGAAAPTKSA 69
P G+ +E R+ G + E R+ D+A P P+ G A
Sbjct: 1079 PRGRTASETRSEGSEYEEIPKRRRQRGSETGSETHESDLAPSDKEAPTPKEGTLTQVPLA 1138
Query: 70 LQVQVVPSSQA-VEFGQHPGRGLQDRTQPTRIIRG--------CTVTSPSRQSETQITPA 120
P S A F GR R P+R RG C SP +S P
Sbjct: 1139 PPPPGAPPSPAPARFTARGGRVFTPRGVPSRRGRGGGRPPPQVCPGWSPPAKSLAPKKPP 1198
Query: 121 GGPAAFCDSTAESKRQLRVG-----AEGKGGGPQALGRGRRVNGPQGPDRWPNGFRPARQ 175
GP S K +L G A G G +G +G RP R+
Sbjct: 1199 TGPLP--PSKEPLKEKLIPGPLSPVARGGSNGGSNVGM-------------EDGERPRRR 1243
Query: 176 RRTRRPARALNSGQWSPGEGRRAALGLEEAGPSLEGIPSSEWDTFSRDKRSLLSSHG-SP 234
R R Q P RR E A EG PS + L++ +P
Sbjct: 1244 RHGRAQQ------QDKPPRFRRLKQERENAARGSEGKPSLTLPASAPGPEEALTTVTVAP 1297
Query: 235 GTIQSSVDIPSLTNTCAGGKDKTPPFSQEVDDPHALSSPFFPKQLGSLSLELPARLPTRC 294
+++ P L+N + ++ + E SS F ++ G
Sbjct: 1298 APRRAAAKSPDLSNQNSDQANEEWETASE-------SSDFTSERRGDKE----------- 1339
Query: 295 LPSPPRSLVAPSESGSAGRRGG---------TNGVATPREKLGGKRGVGRKGQGTRLGAP 345
+PP L+ P G+ G GG + G + R K KR + G
Sbjct: 1340 --APPPVLLTPKAVGTPGGGGGGAVPGISAMSRGDLSQRAKDLSKRSFSSQRPGMERQNR 1397
Query: 346 HSLPPPPPFRTGRGEGGGGGSRADVTAGRARPRRRRWEPLRAQRSGARPGAPAPPLPCLP 405
P +G GGGGG T G R +R W + + P PLP P
Sbjct: 1398 RPGPGGKAGSSGSSSGGGGGGPGGRT-GPGRGDKRSWPSPKNRSRPPEERPPGLPLPPPP 1456
Query: 406 PAA--------VCHALAGAGAPGGRLELGLSPGTRLIRGGGAAVPTAAPPAPLPRWGPGP 457
P++ V H+ AG +L G+ GG P P P GP P
Sbjct: 1457 PSSSAVFRLDQVIHS-NPAGIQQALAQLSSRQGSVTAPGGH---PRHKPGLPQAPQGPSP 1512
Query: 458 LP 459
P
Sbjct: 1513 RP 1514
Score = 42.4 bits (98), Expect = 0.001
Identities = 80/323 (24%), Positives = 104/323 (32%), Gaps = 60/323 (18%)
Query: 179 RRPARALNSGQWSPGEGRRAALGLEEAGP----SLEGIPSSEWDTFSRDKRSLLS----- 229
R+PAR + SG P RR + GP S GIP E R +
Sbjct: 900 RKPARGVGSGGQGPPPPRRESRTETRWGPRPGSSRRGIPPEEPGAPPRRAGPIKKPPPPT 959
Query: 230 --SHGSPGTIQSSVDIPS--------LTNTCAGGKDKTPPFSQEVDDPHALSSPFFPKQL 279
P ++ + P +T GG +TPP P L + +++
Sbjct: 960 KVEELPPKPLEQGDETPKPPKPDPLKITKGKLGGPKETPPNGNLSPAPR-LRRDYSYERV 1018
Query: 280 GSLSLELPARLPTRCLPSPPRSLVAPSESGSAGRRGGTNGVATPREKLGGKRGVGRKGQG 339
G PT C A G G GG A RE + G G+G
Sbjct: 1019 G----------PTSCRGRGRGEYFARGR-GFRGTYGGRGRGARSREFRSYREFRGDDGRG 1067
Query: 340 TRLGAPHSLPPPPPFRTGRGEGGGGGSRADVTAGRARPRRRRW----------------- 382
G P+ PP P RT G ++ P+RRR
Sbjct: 1068 GGTGGPNH-PPAPRGRTASETRSEGSEYEEI------PKRRRQRGSETGSETHESDLAPS 1120
Query: 383 -EPLRAQRSGARPGAP-APPLPCLPPAAVCHALAGAGAPGGRLELGLSPGTRLIRGGGAA 440
+ + G P APP P PP+ A A A GGR+ +R RGGG
Sbjct: 1121 DKEAPTPKEGTLTQVPLAPPPPGAPPSP---APARFTARGGRVFTPRGVPSRRGRGGGRP 1177
Query: 441 VPTAAPPAPLPRWGPGPLPGPTG 463
P P P P PTG
Sbjct: 1178 PPQVCPGWSPPAKSLAPKKPPTG 1200
Score = 31.6 bits (70), Expect = 1.7
Identities = 81/344 (23%), Positives = 107/344 (31%), Gaps = 45/344 (13%)
Query: 159 GPQGPDRWPNGFRPARQRRTRRPARALNSGQWSPGEGRRAAL---GLEEAGPSLEGIPSS 215
GPQGP R+P P+R R P + + GR + L L+E L+
Sbjct: 266 GPQGPYRYPTPDGPSRFPRVAGPRGSGPPMRLVEPVGRPSILKEDNLKEFD-QLDQENDD 324
Query: 216 EWDTFSRD---KRSLLSSHGSPGTIQSSVDIPSLTNTCAGGKDKTPPFSQEVDDPHALSS 272
W + L S G ++ + ++ PP + S
Sbjct: 325 GWAGAHEEVDYTEKLKFSDEEDGRDSDEEGAEGHRDSQSASGEERPPEADGKKGNSPNSE 384
Query: 273 PFFPKQLGSLSLELPARLPTRCLPSPPRSLVAPSESGSAGRRGGTNGVATPREKLGGKRG 332
P PK + + P P P PP + P G AG G
Sbjct: 385 PPTPKTAWAETSRPPETEPGPPAPKPP---LPPPHRGPAGNWGPP--------------- 426
Query: 333 VGRKGQGTRLGAPHSLPPPPPFRTGRGEGGGGGSRADVTAGRARPRRRRWEPLRAQRSGA 392
G G P PP P S ++++ R RRRR E R +
Sbjct: 427 ----GDYPDRGGPPCKPPAPEDEDEAWRQRRKQSSSEISLAVERARRRREEEERRMQEER 482
Query: 393 RPGAPAPPLPCLPPAAVCHALAGAGAPGGRL--ELGLSPGTRLIRGGGAAVPTA--APPA 448
R A A L L GAP RL E P AVP APPA
Sbjct: 483 R-AACAEKLKRLDEKF--------GAPDKRLKAEPAAPPAAPSTPAPPPAVPKELPAPPA 533
Query: 449 PLPRWGPGPLPGPTGLFDLSVGVSAASSSLGSTELEKNMGSGGG 492
P P P P P + + A S+ + SGGG
Sbjct: 534 PPPASAPTPETEPE---EPAQAPPAQSTPTPGVAAAPTLVSGGG 574
>gi|4826998 splicing factor proline/glutamine rich (polypyrimidine
tract binding protein associated) [Homo sapiens]
Length = 707
Score = 49.7 bits (117), Expect = 6e-06
Identities = 42/116 (36%), Positives = 46/116 (39%), Gaps = 6/116 (5%)
Query: 349 PPPPPFRTGRGEGGGGGSRADVTAGRARPRRRRWEPLRAQRSGARPGAPAPPLPCLPPAA 408
PPPPP + + G A G A P P SGA PG+ P P PPA
Sbjct: 99 PPPPPQDSSKPVVAQGPGPAP-GVGSAPPASSSAPPATPPTSGAPPGSGPGPTPTPPPAV 157
Query: 409 VCHALAGAGAPGGRLELGLSPGTRLIRGGGAAVPTAAP-PAPLPRWGPGPLPGPTG 463
A GAP P T GG P A P P P P+ GPGP GP G
Sbjct: 158 TS---APPGAPPPTPPSSGVPTTPPQAGGPPPPPAAVPGPGPGPKQGPGP-GGPKG 209
Score = 38.1 bits (87), Expect = 0.018
Identities = 43/155 (27%), Positives = 54/155 (34%), Gaps = 25/155 (16%)
Query: 324 REKLGGKRGVGRKGQGTRLGAPHSLPPPPP---FRTGRGE--GGGGGSRADVTAGRARPR 378
R + GG G R+G G G H PPP RG G G S P
Sbjct: 7 RSRGGGGGGFHRRGGGGGRGGLHDFRSPPPGMGLNQNRGPMGPGPGQSGPKPPIPPPPPH 66
Query: 379 RRRWEPLRAQRSGARPGAPAPP---------LPCLPPAAVCHALAGAGAPGGRLELGLSP 429
+++ +P Q +P PP P PP + G G +P
Sbjct: 67 QQQQQPPPQQPPPQQPPPHQPPPHPQPHQQQQPPPPPQDSSKPVVAQGP-------GPAP 119
Query: 430 GTRLIRGGGAAVPTAAPP---APLPRWGPGPLPGP 461
G ++ P A PP AP P GPGP P P
Sbjct: 120 GVGSAPPASSSAPPATPPTSGAP-PGSGPGPTPTP 153
Score = 29.6 bits (65), Expect = 6.5
Identities = 51/206 (24%), Positives = 67/206 (32%), Gaps = 41/206 (19%)
Query: 160 PQGPDRWPNGFRPARQRRTRRPARALNSGQWSPGEGRRAALGLEEAGPSLEGIPSSEWDT 219
PQ P P ++ + P +S + +G A G+ A P+ P + T
Sbjct: 79 PQQPPPHQPPPHPQPHQQQQPPPPPQDSSKPVVAQGPGPAPGVGSAPPASSSAPPATPPT 138
Query: 220 FSRDKRSLLSSHGSPGTIQSSVDIPSLTNTCAGGKDKTPPFSQEVDDPHALSSPFFPKQL 279
S PG + P++T+ G TPP S P P Q
Sbjct: 139 SGAPPGS------GPGPTPTPP--PAVTSAPPGAPPPTPPSS---------GVPTTPPQA 181
Query: 280 GSLSLELPARLPTRCLPSPPRSLVAPSESGSAGRRGGTNGVATPREKLGGKRGVGRK-GQ 338
G P PP ++ P G G P+ GGK G K G
Sbjct: 182 GGP-------------PPPPAAVPGPGPGPKQGP-----GPGGPK---GGKMPGGPKPGG 220
Query: 339 GTRLGAPHSLPPPPPFRTGRGEGGGG 364
G L P P PP G GE GG
Sbjct: 221 GPGLSTPGGHPKPP--HRGGGEPRGG 244
>gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 855
Score = 48.5 bits (114), Expect = 1e-05
Identities = 70/242 (28%), Positives = 88/242 (36%), Gaps = 59/242 (24%)
Query: 259 PFSQEVD---DPHALSSPFFPKQLGSLSLELPARLPTRCLPSPPRS--LVAPSESGSAGR 313
PFS P A P P L + L++P PSPP S L AP + G
Sbjct: 543 PFSPSASLPMSPLATPPPQAPPVLAAPLLQVP--------PSPPASPTLQAPRRPPTPGP 594
Query: 314 RGGTNGVATPREKLGGKRGVGRKGQGTRLGAPHSLPPPPPFRTGRGEGGGGGSRADVTAG 373
+G PR L G PPPPP R+ G ++
Sbjct: 595 DTSVSG---PRLTLALAPG----------------PPPPPSRSPSSTLSGPDLAGHSSSA 635
Query: 374 RARPRRRRWEPLRAQRSGARPGAPAPPLPCLPPAAVCHALAGAGAPGGRLELGLSPGTRL 433
+ P E LR SG GA A P P AA CH A + P L +PG L
Sbjct: 636 TSTP-----EELRGYDSGPEGGAAASPPPDAELAA-CHPAAWSRGPAPPLAFRGAPGAPL 689
Query: 434 ----IRGGGAA----------VPTAAPPAPLPRWGPGPLPGPTGLFDLSVGVSAASSSLG 479
G G+A P +A PAP PGP PG +G G +AA + G
Sbjct: 690 PWPPATGPGSADGLCTIYETEGPESATPAP-GALDPGPSPGTSG------GKAAAGAGAG 742
Query: 480 ST 481
++
Sbjct: 743 AS 744
Score = 32.0 bits (71), Expect = 1.3
Identities = 21/55 (38%), Positives = 26/55 (47%), Gaps = 7/55 (12%)
Query: 394 PGAPAPPLPCLPPAAVCHALAGAGAPGGRLELGLSPGTRLIRGGGAAVPTAAPPA 448
PG+P PP P P A L AGA G + + G GGA +P +AP A
Sbjct: 30 PGSPRPPPPVTP--AALRVLGAAGAVGRKPLAERAGGI-----GGATIPESAPRA 77
>gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapiens]
Length = 1124
Score = 48.5 bits (114), Expect = 1e-05
Identities = 70/242 (28%), Positives = 88/242 (36%), Gaps = 59/242 (24%)
Query: 259 PFSQEVD---DPHALSSPFFPKQLGSLSLELPARLPTRCLPSPPRS--LVAPSESGSAGR 313
PFS P A P P L + L++P PSPP S L AP + G
Sbjct: 812 PFSPSASLPMSPLATPPPQAPPVLAAPLLQVP--------PSPPASPTLQAPRRPPTPGP 863
Query: 314 RGGTNGVATPREKLGGKRGVGRKGQGTRLGAPHSLPPPPPFRTGRGEGGGGGSRADVTAG 373
+G PR L G PPPPP R+ G ++
Sbjct: 864 DTSVSG---PRLTLALAPG----------------PPPPPSRSPSSTLSGPDLAGHSSSA 904
Query: 374 RARPRRRRWEPLRAQRSGARPGAPAPPLPCLPPAAVCHALAGAGAPGGRLELGLSPGTRL 433
+ P E LR SG GA A P P AA CH A + P L +PG L
Sbjct: 905 TSTP-----EELRGYDSGPEGGAAASPPPDAELAA-CHPAAWSRGPAPPLAFRGAPGAPL 958
Query: 434 ----IRGGGAA----------VPTAAPPAPLPRWGPGPLPGPTGLFDLSVGVSAASSSLG 479
G G+A P +A PAP PGP PG +G G +AA + G
Sbjct: 959 PWPPATGPGSADGLCTIYETEGPESATPAP-GALDPGPSPGTSG------GKAAAGAGAG 1011
Query: 480 ST 481
++
Sbjct: 1012 AS 1013
Score = 32.0 bits (71), Expect = 1.3
Identities = 21/55 (38%), Positives = 26/55 (47%), Gaps = 7/55 (12%)
Query: 394 PGAPAPPLPCLPPAAVCHALAGAGAPGGRLELGLSPGTRLIRGGGAAVPTAAPPA 448
PG+P PP P P A L AGA G + + G GGA +P +AP A
Sbjct: 30 PGSPRPPPPVTP--AALRVLGAAGAVGRKPLAERAGGI-----GGATIPESAPRA 77
Score = 31.6 bits (70), Expect = 1.7
Identities = 101/454 (22%), Positives = 152/454 (33%), Gaps = 79/454 (17%)
Query: 45 RKDVAGCSSPTPIPEFGA---AAPTKSALQVQVVPSSQAVEFGQHPGRGLQDRTQPTRII 101
R+D +G + TP P AA T+ L + PS++ + P + + ++ +
Sbjct: 161 RRDTSGPTPGTPSPAMARRSRAAGTEVGLP-RPAPSARPRPPTEGPRKSVSSASEHS--- 216
Query: 102 RGCTVTSPSRQSETQITPAGG---PAAFCDSTAESKRQLRVGAEGKGGGPQALGRGRRVN 158
T PS + + + GG PA+ S + S L A GP A G R
Sbjct: 217 ----TTEPSPAARRRPSAGGGLQRPAS--RSLSSSATPLSSPARS---GPSARGTPRAPA 267
Query: 159 GPQGPDRWPNGFRPARQRRTRRPARALNSGQWSPGEGRRAALGLEEAGPS-LEGIPSSEW 217
P P P G + R + P + +P G ++ L PS + P
Sbjct: 268 HPSQPK--PKGLQALRPPQVTPPRKDA-----APALGPLSSSPLATPSPSGTKARPVPPP 320
Query: 218 DTFSRDKRSLLS--------------SHGSPGTIQSSVDIPSLTNTCAGGKDKTPPFSQE 263
D + + L S +P ++Q+ P+ + A TPP
Sbjct: 321 DNAATPLPATLPPSPPLATPLPLAPPSPSAPPSLQTLPSPPATPPSQAPPSMTTPPMQAP 380
Query: 264 --------VDDPHALSSPFF---PKQLGSLSLELPARLPTRCLPSPPRSLVAPSESGSAG 312
+ PH+L+SP P L SL+ L + L + L A
Sbjct: 381 PSLQTIPPIQVPHSLTSPSLQAPPSPLALSSLQATTSLGSPTLQATHSFLTMSPRQTQAS 440
Query: 313 RRGGTNGVATPREKLGGKRGVGRKGQGTRLGAPHSLPPPPPFRTGRGEGGGGGSRADVTA 372
+ +TP + L AP SLP PP +T S + +
Sbjct: 441 LTSPSRPASTPPDS-------------PPLQAPLSLPASPPLQT---------SLSPAVS 478
Query: 373 GRARPRRRRWEPLRAQRSGA--RPGAPAPPLPCLPPAAVCHALAGAGAPGGRLELGLSPG 430
+ P PL+A S A P AP L +PP +LA L P
Sbjct: 479 PLSSP--LTIHPLQALSSLASHSPQAPLSSL-IMPPLETQSSLAPPSLQTPPASLTTPPL 535
Query: 431 TRLIRGGGAAVPTAAPPAPLPRWGPGPLPGPTGL 464
L + TA+ P P P P P L
Sbjct: 536 ENLPSLAPPPLQTASAPLTTPHLETPPCPAPCPL 569
>gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo
sapiens]
Length = 816
Score = 48.5 bits (114), Expect = 1e-05
Identities = 70/242 (28%), Positives = 88/242 (36%), Gaps = 59/242 (24%)
Query: 259 PFSQEVD---DPHALSSPFFPKQLGSLSLELPARLPTRCLPSPPRS--LVAPSESGSAGR 313
PFS P A P P L + L++P PSPP S L AP + G
Sbjct: 504 PFSPSASLPMSPLATPPPQAPPVLAAPLLQVP--------PSPPASPTLQAPRRPPTPGP 555
Query: 314 RGGTNGVATPREKLGGKRGVGRKGQGTRLGAPHSLPPPPPFRTGRGEGGGGGSRADVTAG 373
+G PR L G PPPPP R+ G ++
Sbjct: 556 DTSVSG---PRLTLALAPG----------------PPPPPSRSPSSTLSGPDLAGHSSSA 596
Query: 374 RARPRRRRWEPLRAQRSGARPGAPAPPLPCLPPAAVCHALAGAGAPGGRLELGLSPGTRL 433
+ P E LR SG GA A P P AA CH A + P L +PG L
Sbjct: 597 TSTP-----EELRGYDSGPEGGAAASPPPDAELAA-CHPAAWSRGPAPPLAFRGAPGAPL 650
Query: 434 ----IRGGGAA----------VPTAAPPAPLPRWGPGPLPGPTGLFDLSVGVSAASSSLG 479
G G+A P +A PAP PGP PG +G G +AA + G
Sbjct: 651 PWPPATGPGSADGLCTIYETEGPESATPAP-GALDPGPSPGTSG------GKAAAGAGAG 703
Query: 480 ST 481
++
Sbjct: 704 AS 705
Score = 34.3 bits (77), Expect = 0.27
Identities = 34/128 (26%), Positives = 43/128 (33%), Gaps = 36/128 (28%)
Query: 394 PGAPAPPLPCLPPAAVCHALAGAGAPGGRLELGLSPGTRLIRGGGAAVPTAAPPA----- 448
PG+P PP P P A L AGA G + + G GGA +P +AP A
Sbjct: 30 PGSPRPPPPVTP--AALRVLGAAGAVGRKPLAERAGGI-----GGATIPESAPRAGPTRT 82
Query: 449 -------------PLPRWGPGPL-----------PGPTGLFDLSVGVSAASSSLGSTELE 484
P PGP+ PGP G L + + +TE
Sbjct: 83 SRPPASGRGERAPPAKNTSPGPVSSPGRASGTTRPGPLGQKGLRISAEETVARGKATEAP 142
Query: 485 KNMGSGGG 492
K G
Sbjct: 143 KRSALSAG 150
Score = 33.1 bits (74), Expect = 0.59
Identities = 48/176 (27%), Positives = 56/176 (31%), Gaps = 36/176 (20%)
Query: 288 ARLPTRCLPSPPRSLVAPSESGSAGRRGGTNGVATPREKLGGKRGVGRKGQGTRLGAPHS 347
AR P P PP S P A R LG VGRK R G
Sbjct: 19 ARAPGLLTPRPPGSPRPPPPVTPAALR-----------VLGAAGAVGRKPLAERAG---- 63
Query: 348 LPPPPPFRTGRGEGGGGGSRADVTAGRARPRRRRWEPLRAQRSGARPGAPAPPLPCLPPA 407
G GG+ +A RA P R P + A P P P P
Sbjct: 64 --------------GIGGATIPESAPRAGPTRTSRPPASGRGERAPPAKNTSPGPVSSPG 109
Query: 408 AVCHALAGAGAPG--GRLELGLSPGTRLIRGGGAAVP-TAAPPAPLPRWGPGPLPG 460
+G PG G+ L +S + RG P +A A R GP PG
Sbjct: 110 RA----SGTTRPGPLGQKGLRISAEETVARGKATEAPKRSALSAGARRDTSGPTPG 161
>gi|116256356 alpha 4 type IV collagen precursor [Homo sapiens]
Length = 1690
Score = 48.1 bits (113), Expect = 2e-05
Identities = 95/349 (27%), Positives = 119/349 (34%), Gaps = 51/349 (14%)
Query: 140 GAEGKGGGPQALGRGRRVNGPQGPDRWPNGFRPARQRRTRRPARALNSGQWSPGEGRRAA 199
G G G P + G G GP GP +P P +P R G +PG G +
Sbjct: 190 GDPGLPGLPGSWGAG----GPAGPTGYPG--EPGLVGPPGQPGRPGLKG--NPGVGVKGQ 241
Query: 200 LGLEEAGPSLEGIPSSEWDTFSRDKRSLLSSHGSPGT--IQSSVDIPSL------TNTCA 251
+G P G S T + G G I V +P + A
Sbjct: 242 MG----DPGEVGQQGSPGPTLLVEPPDFCLYKGEKGIKGIPGMVGLPGPPGRKGESGIGA 297
Query: 252 GGKDKTPPFSQEVDDPHALSSPFFPKQLGSLSLELPARLPTRCLPSPPRSLVAP-SESGS 310
G+ P F DP + SP FP G L L L L+ P + G+
Sbjct: 298 KGEKGIPGFPGPRGDPGSYGSPGFPGLKGELGLVGDPGL---------FGLIGPKGDPGN 348
Query: 311 AGRRGGTNGVATPREKLGGKRG----VGRKGQGTRLGAPHSLPPPPPFRTGR-GE----- 360
G G + TP L G G GR G+ +G PP PP GR GE
Sbjct: 349 RGHPGPPGVLVTPPLPLKGPPGDPGFPGRYGETGDVG-----PPGPPGLLGRPGEACAGM 403
Query: 361 -GGGGGSRADVTAGRARPRRRRWEPLRAQRSGARPGAP----APPLPCLPPAAVCHALAG 415
G G G P A +PG+P AP L LP ++V + G
Sbjct: 404 IGPPGPQGFPGLPGLPGEAGIPGRPDSAPGKPGKPGSPGLPGAPGLQGLPGSSVIYCSVG 463
Query: 416 AGAPGGRLELGLSPGTRLIRG-GGAAVPTAAPPAPLPRWGPGPLPGPTG 463
P G PG R +G G A P P+ GP LPG G
Sbjct: 464 NPGPQGIKGKVGPPGGRGPKGEKGNEGLCACEPGPMGPPGPPGLPGRQG 512
Score = 37.4 bits (85), Expect = 0.031
Identities = 93/348 (26%), Positives = 117/348 (33%), Gaps = 67/348 (19%)
Query: 140 GAEGKGGGPQALGRGRR----VNGPQGPDRWPNGFRPARQRRTRRPARALNSGQWSPGE- 194
G G G P LGR + GP GP +P P P R ++ PG+
Sbjct: 382 GDVGPPGPPGLLGRPGEACAGMIGPPGPQGFPG--LPGLPGEAGIPGRPDSA----PGKP 435
Query: 195 GRRAALGLEEAGPSLEGIPSSEWDTFSRDKRSLLSSHGSPGT--IQSSVDIPSLTNTCAG 252
G+ + GL A P L+G+P S + S G+PG I+ V P G
Sbjct: 436 GKPGSPGLPGA-PGLQGLPGSS---------VIYCSVGNPGPQGIKGKVGPPGGRGP-KG 484
Query: 253 GKDKTPPFSQEVDDPHALSSPFFPKQLGSLS-LELPARLPTRCLPSPPRSLVAP------ 305
K + E P P + GS L LP L T+ P PP + P
Sbjct: 485 EKGNEGLCACEPGPMGPPGPPGLPGRQGSKGDLGLPGWLGTKGDPGPPGAEGPPGLPGKH 544
Query: 306 SESGSAGRRGGTNGVATPREKLGGKRGVGRKGQGTRLGAPHSLPPPPPFRTG-RGEGGGG 364
SG G +G + R K G KG+ G PP P + G G G
Sbjct: 545 GASGPPGNKGAKGDMVVSRVK-------GHKGERGPDG-----PPGFPGQPGSHGRDGHA 592
Query: 365 GSRADVTAGRARPRRRRWEPLRAQRSGARPGAPAPPLPCLPPAAV----CHALAGAGAPG 420
G + D A PG P P PP L G PG
Sbjct: 593 GEKGDPGP-------------PGDHEDATPGGKGFPGPLGPPGKAGPVGPPGLGFPGPPG 639
Query: 421 GRLELGLSPGTRLIRG----GGAAVPTAAPPAPLP-RWGPGPLPGPTG 463
R G+ PG +RG G T + P R GP GP G
Sbjct: 640 ERGHPGV-PGHPGVRGPDGLKGQKGDTISCNVTYPGRHGPPGFDGPPG 686
Score = 37.4 bits (85), Expect = 0.031
Identities = 68/246 (27%), Positives = 79/246 (32%), Gaps = 60/246 (24%)
Query: 251 AGGK-DKTPPFSQEVDDPHALSSPFFPKQLGSLSLELPARLPTRCLPSPPRSLVAPSESG 309
AG K D PP E P FP LG P P P PP P G
Sbjct: 592 AGEKGDPGPPGDHEDATPGGKG---FPGPLGPPGKAGPVGPPGLGFPGPPGERGHPGVPG 648
Query: 310 SAGRRG-------------------------GTNGVATPREKLGGKRGVGRKGQGTRLGA 344
G RG G +G P+ G + G G G
Sbjct: 649 HPGVRGPDGLKGQKGDTISCNVTYPGRHGPPGFDGPPGPKGFPGPQGAPGLSGSDGHKGR 708
Query: 345 PHS-----LPPPPPFRTGRGEGGGGGSRADVTAGRARPRRRRWEPLRAQRSGARPGAPAP 399
P + +P PP FR G+ G GG + G P P +G + G P
Sbjct: 709 PGTPGTAEIPGPPGFRGDMGDPGFGGEKGSSPVGPPGP------PGSPGVNGQK-GIPGD 761
Query: 400 PLPCLPPAAVCHALAGAGAPGGRLELGLS--PGTRLIRGGGAAVPTAAPPAPLPRWGPGP 457
P A G PG R GLS PG + R G P A PA +P G
Sbjct: 762 P-----------AFGHLGPPGKR---GLSGVPGIKGPR-GDPGCPGAEGPAGIP--GFLG 804
Query: 458 LPGPTG 463
L GP G
Sbjct: 805 LKGPKG 810
Score = 37.0 bits (84), Expect = 0.041
Identities = 84/338 (24%), Positives = 103/338 (30%), Gaps = 72/338 (21%)
Query: 140 GAEGKGGGPQALGR-----GRRVNGPQGPDRWPNGFRPARQRRTRRPARALNSG----QW 190
G +G+ G P G + + G QGP P RP + P + G +
Sbjct: 1085 GPKGEPGSPGCPGHFGASGEQGLPGIQGPRGSPG--RPGPPGSSGPPGCPGDHGMPGLRG 1142
Query: 191 SPGE-GRRAALGLEEAGPSLEGIPSSEWDTFSRDKRSLLSSHGSPGTIQSSVDIPSLTNT 249
PGE G GL+ P + G P + + S L G GT +S L +
Sbjct: 1143 QPGEMGDPGPRGLQ-GDPGIPGPPGIKGPSGSPGLNGLHGLKGQKGTKGAS----GLHDV 1197
Query: 250 CAGGKDKTPPFSQEVDDPHALSSPFFPKQLGSLSLELPARLPTRCLPSPPRSLVAPSESG 309
G P E DP GS + P + P PP S P +G
Sbjct: 1198 GPPGPVGIPGLKGERGDP------------GSPGISPPGPRGKKGPPGPPGSSGPPGPAG 1245
Query: 310 SAGRRGGTNGVATPREKLGGKRGVGRKGQGTRLGAPHSLPPPPPFRTGRGEGGGGGSRAD 369
+ GR + P G P PP P RG G G
Sbjct: 1246 ATGR--APKDIPDP-------------------GPPGDQGPPGP-DGPRGAPGPPGLPGS 1283
Query: 370 VTAGRARPRRRRWEPLRAQRSGARPGAPAPPLPCLPPA----AVCHALAGAGAPGGRLEL 425
V R P PG P PP P PP C G P G
Sbjct: 1284 VDLLRGEP-----------GDCGLPGPPGPPGPPGPPGYKGFPGCDGKDGQKGPVG---- 1328
Query: 426 GLSPGTRLIRGGGAAVPTAAPPAPLPRWGPGPLPGPTG 463
PG + G P P R GP LPGP G
Sbjct: 1329 --FPGPQGPHGFPGPPGEKGLPGPPGRKGPTGLPGPRG 1364
Score = 36.2 bits (82), Expect = 0.070
Identities = 55/190 (28%), Positives = 63/190 (33%), Gaps = 36/190 (18%)
Query: 304 APSESGSAGRRG--GTNGVATPREKLGGKRGVGRKGQGTRLGAPHSLPPPPPFRTGRGEG 361
AP SGS G +G GT G A G + +G G G G+ PP PP G
Sbjct: 696 APGLSGSDGHKGRPGTPGTAEIPGPPGFRGDMGDPGFGGEKGSSPVGPPGPP--GSPGVN 753
Query: 362 GGGGSRADVTAGRARPRRRRWEPLRAQRSGAR-----PGAPAPP-LPCL----------- 404
G G D G P +R G R PGA P +P
Sbjct: 754 GQKGIPGDPAFGHLGPPGKRGLSGVPGIKGPRGDPGCPGAEGPAGIPGFLGLKGPKGREG 813
Query: 405 ---------PPAAVCHALAGAGAPGGRLELGLS--PGTRLIRGGGAAVPTAAPPAPLPRW 453
PP C GAPG + GL PG+ GG PP P
Sbjct: 814 HAGFPGVPGPPGHSCER----GAPGIPGQPGLPGYPGSPGAPGGKGQPGDVGPPGPAGMK 869
Query: 454 GPGPLPGPTG 463
G LPG G
Sbjct: 870 GLPGLPGRPG 879
>gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens]
Length = 1745
Score = 47.0 bits (110), Expect = 4e-05
Identities = 90/343 (26%), Positives = 110/343 (32%), Gaps = 58/343 (16%)
Query: 140 GAEGKGGGPQALGRGRRVNGPQGPDRWPNGFRPARQRRTRRPARALNSGQWSPGEGRRAA 199
G +G G P G + GP G P Q R P G +G R
Sbjct: 1091 GDKGDAGPPGQPG----IRGPAGHPGPPGA--DGAQGRRGPPGLFGQKGD----DGVRGF 1140
Query: 200 LGLEEAGPSLEGIPSSEWDTFSRDKRSLLSSHGSPGTIQSSVDIPSLTNTCAGGKDKTPP 259
+G+ P L+G+P + + HG+PG P+ G + TP
Sbjct: 1141 VGVI-GPPGLQGLPGPPGEKGEVGDVGSMGPHGAPGP--RGPQGPT-------GSEGTPG 1190
Query: 260 FSQEVDDPHALSSPFFPKQLGSLSLELPARLPTRCLPSPPRSLVAPSESGSAGRRG--GT 317
V P A+ G P PP + P G G +G G
Sbjct: 1191 LPGGVGQPGAVGEKGERGDAGD--------------PGPPGAPGIPGPKGDIGEKGDSGP 1236
Query: 318 NGVATPREKLGGKRGVGRKGQGTRLGAPHSLPPP-----------PPFRTGRGE-GGGGG 365
+G A P K G G KG G P L PP P + G+ GG G
Sbjct: 1237 SGAAGPPGKKGPPGEDGAKGSVGPTGLPGDLGPPGDPGVSGIDGSPGEKGDPGDVGGPGP 1296
Query: 366 SRADVTAGRARPRRRRWEPLRAQRSG--ARPGAPAPPLPCLPPAAVCHALAGAGAPGGRL 423
A G P +R R G GA P P PP GA P GR+
Sbjct: 1297 PGASGEPGAPGPPGKRGPSGHMGREGREGEKGAKGEPGPDGPPGRT--GPMGARGPPGRV 1354
Query: 424 ---ELGLSPGTRLIRGGGAAVPTAAPPAPLPRWGPGPLPGPTG 463
L PG G A PP PL GP LPG G
Sbjct: 1355 GPEGLRGIPGPVGEPGLLGAPGQMGPPGPL---GPSGLPGLKG 1394
Score = 39.3 bits (90), Expect = 0.008
Identities = 56/191 (29%), Positives = 68/191 (35%), Gaps = 44/191 (23%)
Query: 280 GSLSLELPARLPTRCLPSPPRSLVAPSESGSAGRRG-----GTNGVATPREKLGGKRGVG 334
G L E PA L R P P P +G G +G G NG R LG G+G
Sbjct: 965 GPLGKEGPAGL--RGFPGPKGGPGDPGPTGLKGDKGPPGPVGANGSPGERGPLGPAGGIG 1022
Query: 335 RKGQGTRLGAPHSLPPPPPFRTG-RGEGGGGGSRADVTAGRARPRRRRWEPLRAQRSGAR 393
GQ G P P + G RGE G G +
Sbjct: 1023 LPGQSGSEG-----PVGPAGKKGSRGERGPPGPT------------------------GK 1053
Query: 394 PGAPAPPLPCLPPAAVCHALAGAGAPGGRLELGLSPGTRLIRGG-GAAVPTAAPPAPLPR 452
G P P P PP A +G G + ++G +PG + +G G A P P P
Sbjct: 1054 DGIPGPLGPLGPPGAA----GPSGEEGDKGDVG-APGHKGSKGDKGDAGPPGQPGIRGPA 1108
Query: 453 WGPGPLPGPTG 463
PGP PG G
Sbjct: 1109 GHPGP-PGADG 1118
Score = 38.1 bits (87), Expect = 0.018
Identities = 103/396 (26%), Positives = 123/396 (31%), Gaps = 83/396 (20%)
Query: 138 RVGAEGKGGGPQALGRGRRVNGPQGPD--RWPNGFRPARQRRTRRPA------------- 182
R G G G P G GPQGP + P+G P R + RP
Sbjct: 489 RPGPVGLPGHPGLKGE-EGAEGPQGPRGLQGPHG-PPGRVGKMGRPGADGARGLPGDTGP 546
Query: 183 ---RALNSGQWSPGE-GRRAALG-LEEAGP-------SLEGIPSSEWDTFSRDKRSLLSS 230
R + PGE G+R G + + GP EG P R LL
Sbjct: 547 KGDRGFDGLPGLPGEKGQRGDFGHVGQPGPPGEDGERGAEGPPGPTGQAGEPGPRGLLGP 606
Query: 231 HGSPGTIQSSVDIPSLTNTCAGGKDKTPPFSQEVDDPHALSSPFFPKQLGSLSLELPARL 290
GSPG P +T G D P V P P GS L P L
Sbjct: 607 RGSPGPTGR----PGVT-----GIDGAPGAKGNVGPPGEPGPPGQQGNHGSQGLPGPQGL 657
Query: 291 -------------PTRCLPSPPRSLVAPSESGSAGRRG--------GTNGVATPREKLG- 328
LP L P G G +G G G PR G
Sbjct: 658 IGTPGEKGPPGNPGIPGLPGSDGPLGHPGHEGPTGEKGAQGPPGSAGPPGYPGPRGVKGT 717
Query: 329 -GKRGV-GRKGQGTRLGAPHSLPPPPPFRTGRGEGGGGGSRADV----TAGRARPRRRRW 382
G RG+ G KG+ G P + +G+ G G R + G+A
Sbjct: 718 SGNRGLQGEKGEKGEDGFP-GFKGDVGLKGDQGKPGAPGPRGEDGPEGPKGQAGQAGEEG 776
Query: 383 EPLRAQRSG--------ARPGAPAP------PLPCLPPAAVCHALAGAGAPGGRLELGLS 428
P A G PG P P P P L P G PG E G
Sbjct: 777 PPGSAGEKGKLGVPGLPGYPGRPGPKGSIGFPGP-LGPIGEKGKSGKTGQPGLEGERG-P 834
Query: 429 PGTRLIRGGGAAVPTAAPPAPLPRWGPGPLPGPTGL 464
PG+R RG A P + + G +PG GL
Sbjct: 835 PGSRGERGQPGATGQPGPKGDVGQDGAPGIPGEKGL 870
Score = 34.7 bits (78), Expect = 0.20
Identities = 61/189 (32%), Positives = 71/189 (37%), Gaps = 64/189 (33%)
Query: 309 GSAGRRG--GTNGVATPREKLG--GKRGV-GRKGQGTRLGAPHSLPPP--PPFRTGR-GE 360
GS G RG G G P+ +G G G+ G KG G P P P PP G+ G
Sbjct: 836 GSRGERGQPGATGQPGPKGDVGQDGAPGIPGEKGLPGLQGPP-GFPGPKGPPGHQGKDGR 894
Query: 361 GGGGGSRADV----------TAGRARPRRRRWE--PLRAQRSGARPGAPAPPLPCLPPAA 408
G G R ++ AG P+ + E PL G R G P PP
Sbjct: 895 PGHPGQRGELGFQGQTGPPGPAGVLGPQGKTGEVGPL-----GER-GPPGPP-------- 940
Query: 409 VCHALAGAGAPGGRLELGLSPGTRLIRGGGAAVPTAAPPAPL-------------PRWGP 455
G PG E GL PG + G A PP PL P+ GP
Sbjct: 941 --------GPPG---EQGL-PG---LEGREGAKGELGPPGPLGKEGPAGLRGFPGPKGGP 985
Query: 456 GPLPGPTGL 464
G PGPTGL
Sbjct: 986 GD-PGPTGL 993
>gi|56550039 myeloid/lymphoid or mixed-lineage leukemia protein
[Homo sapiens]
Length = 3969
Score = 46.2 bits (108), Expect = 7e-05
Identities = 38/122 (31%), Positives = 50/122 (40%), Gaps = 10/122 (8%)
Query: 353 PFRTGRGEGGGGGSRADVTAGRARPRRRRWEPLRAQRSGARPGAPAPPLPCLPPAAVCHA 412
P R G GGGGG R + + P G PGAP P P + AA
Sbjct: 10 PARPGTTGGGGGGGRRGLGGAPRQRVPALLLPPGPPVGGGGPGAPPSP-PAVAAAAAAAG 68
Query: 413 LAGAGAPGGRLELGLSPGTRLIRGGGAAVPTAAPPAPLPRWGPGPLPGPTGLFDLSVGVS 472
+GAG PGG + + ++ ++ PA L R GPG FD ++ VS
Sbjct: 69 SSGAGVPGGAAAASAASSSSASSSSSSSSSASSGPA-LLRVGPG--------FDAALQVS 119
Query: 473 AA 474
AA
Sbjct: 120 AA 121
>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
sapiens]
Length = 1818
Score = 46.2 bits (108), Expect = 7e-05
Identities = 85/347 (24%), Positives = 107/347 (30%), Gaps = 55/347 (15%)
Query: 122 GPAAFCDSTAESKRQLRVGAEGKGGGPQALGRGRRVNGPQGPDRWPNGFRPARQRRTRRP 181
GPA S E + +G G+ G G NGP GP P Q P
Sbjct: 1126 GPAGPAGSPGEDGDKGEIGEPGQKGSKGDKGE----NGPPGP--------PGLQGPVGAP 1173
Query: 182 ARALNSGQWSPGEGRRAALGLEEAGPSLEGIPSSEWDTFSRDKRSLLSSHGSPGTIQSSV 241
A G+ P G++ G ++ G P L G PG +
Sbjct: 1174 GIAGGDGEPGP-RGQQGMFG-QKGDEGARGFPGPPGPI------GLQGLPGPPGEKGENG 1225
Query: 242 DIPSLTNTCAGGKDKTPPFSQEVDDPHALSSPFFPK-QLGSLSLELPARLPTRC-LPSPP 299
D+ + PP + P+ P P +GS+ P P PP
Sbjct: 1226 DVGPMG-------PPGPPGPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPGPP 1278
Query: 300 RSLVAPSESGSAGRRG--GTNGVATPREKLGGKRGVGRKGQGTRLGAPHSLPPPPPFRTG 357
G G +G G G A P G G KG +G P PP
Sbjct: 1279 GEAGVGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGPPGEPGPA 1338
Query: 358 RGEGGGGGSRADVTAGRARPRRRRWEPLRAQRSGARPGAPAPPLPCLPPAAVCHALAGAG 417
+G GG D G+ P E G P PP PP A AG
Sbjct: 1339 GQDGVGGDKGEDGDPGQPGPPGPSGEA----------GPPGPPGKRGPPGA-------AG 1381
Query: 418 APGGRLELGLSPGTRLIRGGGAAVPTAAPPAPLPRWGPGPLPGPTGL 464
A G + E G +G A P+ GP PGP GL
Sbjct: 1382 AEGRQGEKGA-------KGEAGAEGPPGKTGPVGPQGPAGKPGPEGL 1421
Score = 44.7 bits (104), Expect = 2e-04
Identities = 91/345 (26%), Positives = 115/345 (33%), Gaps = 80/345 (23%)
Query: 140 GAEGKGGGPQALGRGRRVNGPQGPDRWPNGFRPARQRRTRRPARALNSGQWSPGE-GRRA 198
G +GK G P G V GPQGP P +R P PGE G
Sbjct: 967 GFQGKTGPPGPGG----VVGPQGPTGETG---PIGERGHPGPPGP-------PGEQGLPG 1012
Query: 199 ALGLEEA--GPSLEGIPSSEWDTFSRD---KRSLLSSHGSPGTIQSSVDIPSLTNTCAGG 253
A G E A P +GI + R +R L + G+PG GG
Sbjct: 1013 AAGKEGAKGDPGPQGISGKDGPAGLRGFPGERGLPGAQGAPGL--------------KGG 1058
Query: 254 KDKTPPFSQEVDDPHALSSPFFPKQLGSLS-LELPARLPTRCLPSPPRSLVAPSESGSAG 312
+ P P + SP G+ + LP R + P P AP E G G
Sbjct: 1059 EGPQGP-------PGPVGSPGERGSAGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQG 1111
Query: 313 RRG-----------GTNGVATPREKLGGKRGVGRKGQ-GTRLGAPHSLPPPPPFRTGRGE 360
G G G A + G K +G GQ G++ + PP PP G
Sbjct: 1112 PAGRDGVQGPVGLPGPAGPAGSPGEDGDKGEIGEPGQKGSKGDKGENGPPGPPGLQGPVG 1171
Query: 361 GGGGGSRADVTAGRARPRRRRWEPLRAQRS--GARPGAPAPPLPCLPPAAVCHALAGAGA 418
G + G P R + + Q+ GAR G P PP P + G
Sbjct: 1172 APG------IAGGDGEPGPRGQQGMFGQKGDEGAR-GFPGPPGP----------IGLQGL 1214
Query: 419 PGGRLELGLSPGTRLIRGGGAAVPTAAPPAPLPRWGPGPLPGPTG 463
PG PG + G + PP P GP GP G
Sbjct: 1215 PG-------PPGEKGENGDVGPMGPPGPPGPRGPQGPNGADGPQG 1252
Score = 40.0 bits (92), Expect = 0.005
Identities = 82/332 (24%), Positives = 98/332 (29%), Gaps = 45/332 (13%)
Query: 145 GGGPQALGRGRRVNGPQGPDRWPNGFRPARQRRTRRPARALNSGQWSPGEGRRAALGLEE 204
G GP R GPQGP +P P P + G PG+ +
Sbjct: 920 GDGPPGPPGERGPQGPQGPVGFPGPKGPPGP-----PGKDGLPGH--PGQRGETGFQGKT 972
Query: 205 AGPSLEGIPSSEWDTFSRDKRSLLSSHGSPGTIQSSVDIPSLTNTCAGGKDKTPPFSQEV 264
P G+ + T G PG +P D P
Sbjct: 973 GPPGPGGVVGPQGPTGETGPIGERGHPGPPGP-PGEQGLPGAAGKEGAKGDPGPQGISGK 1031
Query: 265 DDPHALSSPFFPKQLGSLSLE-LPARLPTRCLPSPPRSLVAPSESGSAGRRG-----GTN 318
D P L FP + G + P PP + +P E GSAG G G
Sbjct: 1032 DGPAGLRG--FPGERGLPGAQGAPGLKGGEGPQGPPGPVGSPGERGSAGTAGPIGLPGRP 1089
Query: 319 GVATPREKLGGKRGVGRKGQGTRLG-----APHSLPPPPPFRTGRGEGGGGGSRADVTAG 373
G P G K G KG G P LP P GE G G
Sbjct: 1090 GPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPAGSPGEDGDKGEIG----- 1144
Query: 374 RARPRRRRWEPLRAQRSG--ARPGAPAPPLPCLPPAAVCHALAGAGAPGGRLELGLSPGT 431
EP + G G P PP P G G PG R + G+
Sbjct: 1145 ---------EPGQKGSKGDKGENGPPGPP-GLQGPVGAPGIAGGDGEPGPRGQQGMFGQ- 1193
Query: 432 RLIRGGGAAVPTAAPPAPLPRWGPGPLPGPTG 463
+G A PP P+ G LPGP G
Sbjct: 1194 ---KGDEGARGFPGPPGPIGLQG---LPGPPG 1219
Score = 38.1 bits (87), Expect = 0.018
Identities = 88/363 (24%), Positives = 119/363 (32%), Gaps = 93/363 (25%)
Query: 119 PAGGPAAFCDSTAESKRQLRVGAEGKGGGPQALGRGRRVNGPQGPDRWPNGFRPARQRRT 178
P GGP + GA+G+ G P G R V GP GP P
Sbjct: 554 PVGGPGSS-------------GAKGESGDPGPQGP-RGVQGPPGPTGKPG---------- 589
Query: 179 RRPARALNSGQWSPGE-GRRAALGLEEAGPSLEGIPSSEWDTFSRDKRSLLSSHGSPGTI 237
+R + G+ PGE G + G + G+P D R +R G PG
Sbjct: 590 KRGRPGADGGRGMPGEPGAKGDRGFD-------GLPGLPGDKGHRGERGPQGPPGPPG-- 640
Query: 238 QSSVDIPSLTNTCAGGKDKTPPFSQEVDDPHALSSPFFPKQLGSLSLELPARLPTRCLPS 297
+ G+D ++G P LP +
Sbjct: 641 ----------DDGMRGEDG---------------------EIG------PRGLPGE---A 660
Query: 298 PPRSLVAP-SESGSAGRRG--GTNGVATPREKLGGKRGVGRKGQGTRLGAPHSLPPPPPF 354
PR L+ P G+ G+ G G +G P+ +G + G GQ G P LP P
Sbjct: 661 GPRGLLGPRGTPGAPGQPGMAGVDGPPGPKGNMGPQGEPGPPGQQGNPG-PQGLPGPQGP 719
Query: 355 RTGRGEGG--GGGSRADVTAGRARPRRRRWEPLRAQRSGARPGAPAPPLPCLPPAAV--- 409
GE G G A + P E ++ P P P+ P V
Sbjct: 720 IGPPGEKGPQGKPGLAGLPGADGPPGHPGKEGQSGEKGALGPPGPQGPIGYPGPRGVKGA 779
Query: 410 --CHALAGA-------GAPGGRLELGLSPGTRLIRGGGAAVPTAAPPAPLPRWGPGPLPG 460
L G+ G PG + ++GL G R G P P R GP PG
Sbjct: 780 DGVRGLKGSKGEKGEDGFPGFKGDMGLK-GDRGEVGQIGPRGEDGPEGPKGRAGPTGDPG 838
Query: 461 PTG 463
P+G
Sbjct: 839 PSG 841
Score = 37.0 bits (84), Expect = 0.041
Identities = 85/337 (25%), Positives = 103/337 (30%), Gaps = 81/337 (24%)
Query: 140 GAEGKGGGPQALGRGRRVNGPQGPDRWPNGFR--PARQRRTRRPARALNSGQWSPGE-GR 196
G +G+ G P + G V GP GP P G P Q T P PG+ G
Sbjct: 435 GEKGQKGEPAVVEPGMLVEGPPGP-AGPAGIMGPPGLQGPTGPPG--------DPGDRGP 485
Query: 197 RAALGLEEAGPSLEGIPSSEWDTFSRDKRSLLSSHGSPGTIQSSVDIPSLTNTCAGGKDK 256
GL P +G+P G PGT+ L G K
Sbjct: 486 PGRPGL----PGADGLP------------------GPPGTMLM------LPFRYGGDGSK 517
Query: 257 TPPFSQEVDDPHALSSPFFPKQLGSLSLELPARLPTRCLPSP------PRSLVAPSESGS 310
P S + A+ AR+ R P P P + P SG+
Sbjct: 518 GPTISAQEAQAQAILQQ--------------ARIALRGPPGPMGLTGRPGPVGGPGSSGA 563
Query: 311 AGRRGGTNGVATPREKLGGKRGVGRKGQGTRLGAP--HSLPPPPPFRTGRGEGGGGGSRA 368
G G G PR G G+ G+ R GA +P P + RG G G
Sbjct: 564 KGESGDP-GPQGPRGVQGPPGPTGKPGKRGRPGADGGRGMPGEPGAKGDRGFDGLPGLPG 622
Query: 369 DVTAGRARPRRRRWEPLRAQRSGAR--PGAPAPPLPCLPPAAVCHALAGAGAPGGRLELG 426
D G R + P G R G P L G P G L
Sbjct: 623 D--KGHRGERGPQGPPGPPGDDGMRGEDGEIGP-----------RGLPGEAGPRGLLGPR 669
Query: 427 LSPGTRLIRGGGAAVPTAAPPAPLPRWGPGPLPGPTG 463
+PG G PP P GP PGP G
Sbjct: 670 GTPGAP---GQPGMAGVDGPPGPKGNMGPQGEPGPPG 703
Score = 36.6 bits (83), Expect = 0.053
Identities = 88/344 (25%), Positives = 109/344 (31%), Gaps = 67/344 (19%)
Query: 139 VGAEGKGG--GPQALGRGRRVNGPQGPDRWPNGFRPARQRRTRRPARALNSGQWSPGE-- 194
VG G G GP+ +GPQGP ++ P A N G PGE
Sbjct: 1227 VGPMGPPGPPGPRGPQGPNGADGPQGPPGSVGSVGGVGEKG--EPGEAGNPGP--PGEAG 1282
Query: 195 -----GRRAALGLEEAGPSLEGIPSSEWDTFSRDKRSLLSSHGSPGTIQSSVDIPSLTNT 249
G R G EAGP P + ++ G+PG + D
Sbjct: 1283 VGGPKGERGEKG--EAGP-----PGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGPPGEP 1335
Query: 250 CAGGKDKTPPFSQEVDDPHALSSPFFPKQLGSLSLELPARLPTRCLPSPPRSLVAPSESG 309
G+D E DP P + G P PP P +G
Sbjct: 1336 GPAGQDGVGGDKGEDGDPGQPGPPGPSGEAGP--------------PGPPGKRGPPGAAG 1381
Query: 310 SAGRRGGTNGVATPREKLGGKRGVGRKGQGTRLGAPHSLPPPPPFRTGRGEGGGGGSRAD 369
+ GR+G EK G KG+ G P P P +G G +
Sbjct: 1382 AEGRQG---------EK-------GAKGEAGAEGPPGKTGPVGP------QGPAGKPGPE 1419
Query: 370 VTAGRARPRRRRWEPLRAQRSGARPGAPAPP-LPCLPPAAVCHALAG-------AGAPGG 421
G P + P A + G PG PP LP L G G PG
Sbjct: 1420 GLRGIPGPVGEQGLPGAAGQDGP-PGPMGPPGLPGLKGDPGSKGEKGHPGLIGLIGPPGE 1478
Query: 422 RLELGLS--PGTRLIRGGGAAVPTAAPPAPLPRWGPGPLPGPTG 463
+ E G PGT+ G P PL GP LPGP G
Sbjct: 1479 QGEKGDRGLPGTQGSPGAKGDGGIPGPAGPLGPPGPPGLPGPQG 1522
>gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Homo
sapiens]
Length = 1767
Score = 46.2 bits (108), Expect = 7e-05
Identities = 85/347 (24%), Positives = 107/347 (30%), Gaps = 55/347 (15%)
Query: 122 GPAAFCDSTAESKRQLRVGAEGKGGGPQALGRGRRVNGPQGPDRWPNGFRPARQRRTRRP 181
GPA S E + +G G+ G G NGP GP P Q P
Sbjct: 1075 GPAGPAGSPGEDGDKGEIGEPGQKGSKGDKGE----NGPPGP--------PGLQGPVGAP 1122
Query: 182 ARALNSGQWSPGEGRRAALGLEEAGPSLEGIPSSEWDTFSRDKRSLLSSHGSPGTIQSSV 241
A G+ P G++ G ++ G P L G PG +
Sbjct: 1123 GIAGGDGEPGP-RGQQGMFG-QKGDEGARGFPGPPGPI------GLQGLPGPPGEKGENG 1174
Query: 242 DIPSLTNTCAGGKDKTPPFSQEVDDPHALSSPFFPK-QLGSLSLELPARLPTRC-LPSPP 299
D+ + PP + P+ P P +GS+ P P PP
Sbjct: 1175 DVGPMG-------PPGPPGPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPGPP 1227
Query: 300 RSLVAPSESGSAGRRG--GTNGVATPREKLGGKRGVGRKGQGTRLGAPHSLPPPPPFRTG 357
G G +G G G A P G G KG +G P PP
Sbjct: 1228 GEAGVGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGPPGEPGPA 1287
Query: 358 RGEGGGGGSRADVTAGRARPRRRRWEPLRAQRSGARPGAPAPPLPCLPPAAVCHALAGAG 417
+G GG D G+ P E G P PP PP A AG
Sbjct: 1288 GQDGVGGDKGEDGDPGQPGPPGPSGEA----------GPPGPPGKRGPPGA-------AG 1330
Query: 418 APGGRLELGLSPGTRLIRGGGAAVPTAAPPAPLPRWGPGPLPGPTGL 464
A G + E G +G A P+ GP PGP GL
Sbjct: 1331 AEGRQGEKGA-------KGEAGAEGPPGKTGPVGPQGPAGKPGPEGL 1370
Score = 44.7 bits (104), Expect = 2e-04
Identities = 91/345 (26%), Positives = 115/345 (33%), Gaps = 80/345 (23%)
Query: 140 GAEGKGGGPQALGRGRRVNGPQGPDRWPNGFRPARQRRTRRPARALNSGQWSPGE-GRRA 198
G +GK G P G V GPQGP P +R P PGE G
Sbjct: 916 GFQGKTGPPGPGG----VVGPQGPTGETG---PIGERGHPGPPGP-------PGEQGLPG 961
Query: 199 ALGLEEA--GPSLEGIPSSEWDTFSRD---KRSLLSSHGSPGTIQSSVDIPSLTNTCAGG 253
A G E A P +GI + R +R L + G+PG GG
Sbjct: 962 AAGKEGAKGDPGPQGISGKDGPAGLRGFPGERGLPGAQGAPGL--------------KGG 1007
Query: 254 KDKTPPFSQEVDDPHALSSPFFPKQLGSLS-LELPARLPTRCLPSPPRSLVAPSESGSAG 312
+ P P + SP G+ + LP R + P P AP E G G
Sbjct: 1008 EGPQGP-------PGPVGSPGERGSAGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQG 1060
Query: 313 RRG-----------GTNGVATPREKLGGKRGVGRKGQ-GTRLGAPHSLPPPPPFRTGRGE 360
G G G A + G K +G GQ G++ + PP PP G
Sbjct: 1061 PAGRDGVQGPVGLPGPAGPAGSPGEDGDKGEIGEPGQKGSKGDKGENGPPGPPGLQGPVG 1120
Query: 361 GGGGGSRADVTAGRARPRRRRWEPLRAQRS--GARPGAPAPPLPCLPPAAVCHALAGAGA 418
G + G P R + + Q+ GAR G P PP P + G
Sbjct: 1121 APG------IAGGDGEPGPRGQQGMFGQKGDEGAR-GFPGPPGP----------IGLQGL 1163
Query: 419 PGGRLELGLSPGTRLIRGGGAAVPTAAPPAPLPRWGPGPLPGPTG 463
PG PG + G + PP P GP GP G
Sbjct: 1164 PG-------PPGEKGENGDVGPMGPPGPPGPRGPQGPNGADGPQG 1201
Score = 40.0 bits (92), Expect = 0.005
Identities = 82/332 (24%), Positives = 98/332 (29%), Gaps = 45/332 (13%)
Query: 145 GGGPQALGRGRRVNGPQGPDRWPNGFRPARQRRTRRPARALNSGQWSPGEGRRAALGLEE 204
G GP R GPQGP +P P P + G PG+ +
Sbjct: 869 GDGPPGPPGERGPQGPQGPVGFPGPKGPPGP-----PGKDGLPGH--PGQRGETGFQGKT 921
Query: 205 AGPSLEGIPSSEWDTFSRDKRSLLSSHGSPGTIQSSVDIPSLTNTCAGGKDKTPPFSQEV 264
P G+ + T G PG +P D P
Sbjct: 922 GPPGPGGVVGPQGPTGETGPIGERGHPGPPGP-PGEQGLPGAAGKEGAKGDPGPQGISGK 980
Query: 265 DDPHALSSPFFPKQLGSLSLE-LPARLPTRCLPSPPRSLVAPSESGSAGRRG-----GTN 318
D P L FP + G + P PP + +P E GSAG G G
Sbjct: 981 DGPAGLRG--FPGERGLPGAQGAPGLKGGEGPQGPPGPVGSPGERGSAGTAGPIGLPGRP 1038
Query: 319 GVATPREKLGGKRGVGRKGQGTRLG-----APHSLPPPPPFRTGRGEGGGGGSRADVTAG 373
G P G K G KG G P LP P GE G G
Sbjct: 1039 GPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPAGSPGEDGDKGEIG----- 1093
Query: 374 RARPRRRRWEPLRAQRSG--ARPGAPAPPLPCLPPAAVCHALAGAGAPGGRLELGLSPGT 431
EP + G G P PP P G G PG R + G+
Sbjct: 1094 ---------EPGQKGSKGDKGENGPPGPP-GLQGPVGAPGIAGGDGEPGPRGQQGMFGQ- 1142
Query: 432 RLIRGGGAAVPTAAPPAPLPRWGPGPLPGPTG 463
+G A PP P+ G LPGP G
Sbjct: 1143 ---KGDEGARGFPGPPGPIGLQG---LPGPPG 1168
Score = 38.1 bits (87), Expect = 0.018
Identities = 88/363 (24%), Positives = 119/363 (32%), Gaps = 93/363 (25%)
Query: 119 PAGGPAAFCDSTAESKRQLRVGAEGKGGGPQALGRGRRVNGPQGPDRWPNGFRPARQRRT 178
P GGP + GA+G+ G P G R V GP GP P
Sbjct: 503 PVGGPGSS-------------GAKGESGDPGPQGP-RGVQGPPGPTGKPG---------- 538
Query: 179 RRPARALNSGQWSPGE-GRRAALGLEEAGPSLEGIPSSEWDTFSRDKRSLLSSHGSPGTI 237
+R + G+ PGE G + G + G+P D R +R G PG
Sbjct: 539 KRGRPGADGGRGMPGEPGAKGDRGFD-------GLPGLPGDKGHRGERGPQGPPGPPG-- 589
Query: 238 QSSVDIPSLTNTCAGGKDKTPPFSQEVDDPHALSSPFFPKQLGSLSLELPARLPTRCLPS 297
+ G+D ++G P LP +
Sbjct: 590 ----------DDGMRGEDG---------------------EIG------PRGLPGE---A 609
Query: 298 PPRSLVAP-SESGSAGRRG--GTNGVATPREKLGGKRGVGRKGQGTRLGAPHSLPPPPPF 354
PR L+ P G+ G+ G G +G P+ +G + G GQ G P LP P
Sbjct: 610 GPRGLLGPRGTPGAPGQPGMAGVDGPPGPKGNMGPQGEPGPPGQQGNPG-PQGLPGPQGP 668
Query: 355 RTGRGEGG--GGGSRADVTAGRARPRRRRWEPLRAQRSGARPGAPAPPLPCLPPAAV--- 409
GE G G A + P E ++ P P P+ P V
Sbjct: 669 IGPPGEKGPQGKPGLAGLPGADGPPGHPGKEGQSGEKGALGPPGPQGPIGYPGPRGVKGA 728
Query: 410 --CHALAGA-------GAPGGRLELGLSPGTRLIRGGGAAVPTAAPPAPLPRWGPGPLPG 460
L G+ G PG + ++GL G R G P P R GP PG
Sbjct: 729 DGVRGLKGSKGEKGEDGFPGFKGDMGLK-GDRGEVGQIGPRGEDGPEGPKGRAGPTGDPG 787
Query: 461 PTG 463
P+G
Sbjct: 788 PSG 790
Score = 37.0 bits (84), Expect = 0.041
Identities = 85/337 (25%), Positives = 103/337 (30%), Gaps = 81/337 (24%)
Query: 140 GAEGKGGGPQALGRGRRVNGPQGPDRWPNGFR--PARQRRTRRPARALNSGQWSPGE-GR 196
G +G+ G P + G V GP GP P G P Q T P PG+ G
Sbjct: 384 GEKGQKGEPAVVEPGMLVEGPPGP-AGPAGIMGPPGLQGPTGPPG--------DPGDRGP 434
Query: 197 RAALGLEEAGPSLEGIPSSEWDTFSRDKRSLLSSHGSPGTIQSSVDIPSLTNTCAGGKDK 256
GL P +G+P G PGT+ L G K
Sbjct: 435 PGRPGL----PGADGLP------------------GPPGTMLM------LPFRYGGDGSK 466
Query: 257 TPPFSQEVDDPHALSSPFFPKQLGSLSLELPARLPTRCLPSP------PRSLVAPSESGS 310
P S + A+ AR+ R P P P + P SG+
Sbjct: 467 GPTISAQEAQAQAILQQ--------------ARIALRGPPGPMGLTGRPGPVGGPGSSGA 512
Query: 311 AGRRGGTNGVATPREKLGGKRGVGRKGQGTRLGAP--HSLPPPPPFRTGRGEGGGGGSRA 368
G G G PR G G+ G+ R GA +P P + RG G G
Sbjct: 513 KGESGDP-GPQGPRGVQGPPGPTGKPGKRGRPGADGGRGMPGEPGAKGDRGFDGLPGLPG 571
Query: 369 DVTAGRARPRRRRWEPLRAQRSGAR--PGAPAPPLPCLPPAAVCHALAGAGAPGGRLELG 426
D G R + P G R G P L G P G L
Sbjct: 572 D--KGHRGERGPQGPPGPPGDDGMRGEDGEIGP-----------RGLPGEAGPRGLLGPR 618
Query: 427 LSPGTRLIRGGGAAVPTAAPPAPLPRWGPGPLPGPTG 463
+PG G PP P GP PGP G
Sbjct: 619 GTPGAP---GQPGMAGVDGPPGPKGNMGPQGEPGPPG 652
Score = 36.6 bits (83), Expect = 0.053
Identities = 88/344 (25%), Positives = 109/344 (31%), Gaps = 67/344 (19%)
Query: 139 VGAEGKGG--GPQALGRGRRVNGPQGPDRWPNGFRPARQRRTRRPARALNSGQWSPGE-- 194
VG G G GP+ +GPQGP ++ P A N G PGE
Sbjct: 1176 VGPMGPPGPPGPRGPQGPNGADGPQGPPGSVGSVGGVGEKG--EPGEAGNPGP--PGEAG 1231
Query: 195 -----GRRAALGLEEAGPSLEGIPSSEWDTFSRDKRSLLSSHGSPGTIQSSVDIPSLTNT 249
G R G EAGP P + ++ G+PG + D
Sbjct: 1232 VGGPKGERGEKG--EAGP-----PGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGPPGEP 1284
Query: 250 CAGGKDKTPPFSQEVDDPHALSSPFFPKQLGSLSLELPARLPTRCLPSPPRSLVAPSESG 309
G+D E DP P + G P PP P +G
Sbjct: 1285 GPAGQDGVGGDKGEDGDPGQPGPPGPSGEAGP--------------PGPPGKRGPPGAAG 1330
Query: 310 SAGRRGGTNGVATPREKLGGKRGVGRKGQGTRLGAPHSLPPPPPFRTGRGEGGGGGSRAD 369
+ GR+G EK G KG+ G P P P +G G +
Sbjct: 1331 AEGRQG---------EK-------GAKGEAGAEGPPGKTGPVGP------QGPAGKPGPE 1368
Query: 370 VTAGRARPRRRRWEPLRAQRSGARPGAPAPP-LPCLPPAAVCHALAG-------AGAPGG 421
G P + P A + G PG PP LP L G G PG
Sbjct: 1369 GLRGIPGPVGEQGLPGAAGQDGP-PGPMGPPGLPGLKGDPGSKGEKGHPGLIGLIGPPGE 1427
Query: 422 RLELGLS--PGTRLIRGGGAAVPTAAPPAPLPRWGPGPLPGPTG 463
+ E G PGT+ G P PL GP LPGP G
Sbjct: 1428 QGEKGDRGLPGTQGSPGAKGDGGIPGPAGPLGPPGPPGLPGPQG 1471
>gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Homo
sapiens]
Length = 1806
Score = 46.2 bits (108), Expect = 7e-05
Identities = 85/347 (24%), Positives = 107/347 (30%), Gaps = 55/347 (15%)
Query: 122 GPAAFCDSTAESKRQLRVGAEGKGGGPQALGRGRRVNGPQGPDRWPNGFRPARQRRTRRP 181
GPA S E + +G G+ G G NGP GP P Q P
Sbjct: 1114 GPAGPAGSPGEDGDKGEIGEPGQKGSKGDKGE----NGPPGP--------PGLQGPVGAP 1161
Query: 182 ARALNSGQWSPGEGRRAALGLEEAGPSLEGIPSSEWDTFSRDKRSLLSSHGSPGTIQSSV 241
A G+ P G++ G ++ G P L G PG +
Sbjct: 1162 GIAGGDGEPGP-RGQQGMFG-QKGDEGARGFPGPPGPI------GLQGLPGPPGEKGENG 1213
Query: 242 DIPSLTNTCAGGKDKTPPFSQEVDDPHALSSPFFPK-QLGSLSLELPARLPTRC-LPSPP 299
D+ + PP + P+ P P +GS+ P P PP
Sbjct: 1214 DVGPMG-------PPGPPGPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPGPP 1266
Query: 300 RSLVAPSESGSAGRRG--GTNGVATPREKLGGKRGVGRKGQGTRLGAPHSLPPPPPFRTG 357
G G +G G G A P G G KG +G P PP
Sbjct: 1267 GEAGVGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGPPGEPGPA 1326
Query: 358 RGEGGGGGSRADVTAGRARPRRRRWEPLRAQRSGARPGAPAPPLPCLPPAAVCHALAGAG 417
+G GG D G+ P E G P PP PP A AG
Sbjct: 1327 GQDGVGGDKGEDGDPGQPGPPGPSGEA----------GPPGPPGKRGPPGA-------AG 1369
Query: 418 APGGRLELGLSPGTRLIRGGGAAVPTAAPPAPLPRWGPGPLPGPTGL 464
A G + E G +G A P+ GP PGP GL
Sbjct: 1370 AEGRQGEKGA-------KGEAGAEGPPGKTGPVGPQGPAGKPGPEGL 1409
Score = 44.7 bits (104), Expect = 2e-04
Identities = 91/345 (26%), Positives = 115/345 (33%), Gaps = 80/345 (23%)
Query: 140 GAEGKGGGPQALGRGRRVNGPQGPDRWPNGFRPARQRRTRRPARALNSGQWSPGE-GRRA 198
G +GK G P G V GPQGP P +R P PGE G
Sbjct: 955 GFQGKTGPPGPGG----VVGPQGPTGETG---PIGERGHPGPPGP-------PGEQGLPG 1000
Query: 199 ALGLEEA--GPSLEGIPSSEWDTFSRD---KRSLLSSHGSPGTIQSSVDIPSLTNTCAGG 253
A G E A P +GI + R +R L + G+PG GG
Sbjct: 1001 AAGKEGAKGDPGPQGISGKDGPAGLRGFPGERGLPGAQGAPGL--------------KGG 1046
Query: 254 KDKTPPFSQEVDDPHALSSPFFPKQLGSLS-LELPARLPTRCLPSPPRSLVAPSESGSAG 312
+ P P + SP G+ + LP R + P P AP E G G
Sbjct: 1047 EGPQGP-------PGPVGSPGERGSAGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQG 1099
Query: 313 RRG-----------GTNGVATPREKLGGKRGVGRKGQ-GTRLGAPHSLPPPPPFRTGRGE 360
G G G A + G K +G GQ G++ + PP PP G
Sbjct: 1100 PAGRDGVQGPVGLPGPAGPAGSPGEDGDKGEIGEPGQKGSKGDKGENGPPGPPGLQGPVG 1159
Query: 361 GGGGGSRADVTAGRARPRRRRWEPLRAQRS--GARPGAPAPPLPCLPPAAVCHALAGAGA 418
G + G P R + + Q+ GAR G P PP P + G
Sbjct: 1160 APG------IAGGDGEPGPRGQQGMFGQKGDEGAR-GFPGPPGP----------IGLQGL 1202
Query: 419 PGGRLELGLSPGTRLIRGGGAAVPTAAPPAPLPRWGPGPLPGPTG 463
PG PG + G + PP P GP GP G
Sbjct: 1203 PG-------PPGEKGENGDVGPMGPPGPPGPRGPQGPNGADGPQG 1240
Score = 40.0 bits (92), Expect = 0.005
Identities = 82/332 (24%), Positives = 98/332 (29%), Gaps = 45/332 (13%)
Query: 145 GGGPQALGRGRRVNGPQGPDRWPNGFRPARQRRTRRPARALNSGQWSPGEGRRAALGLEE 204
G GP R GPQGP +P P P + G PG+ +
Sbjct: 908 GDGPPGPPGERGPQGPQGPVGFPGPKGPPGP-----PGKDGLPGH--PGQRGETGFQGKT 960
Query: 205 AGPSLEGIPSSEWDTFSRDKRSLLSSHGSPGTIQSSVDIPSLTNTCAGGKDKTPPFSQEV 264
P G+ + T G PG +P D P
Sbjct: 961 GPPGPGGVVGPQGPTGETGPIGERGHPGPPGP-PGEQGLPGAAGKEGAKGDPGPQGISGK 1019
Query: 265 DDPHALSSPFFPKQLGSLSLE-LPARLPTRCLPSPPRSLVAPSESGSAGRRG-----GTN 318
D P L FP + G + P PP + +P E GSAG G G
Sbjct: 1020 DGPAGLRG--FPGERGLPGAQGAPGLKGGEGPQGPPGPVGSPGERGSAGTAGPIGLPGRP 1077
Query: 319 GVATPREKLGGKRGVGRKGQGTRLG-----APHSLPPPPPFRTGRGEGGGGGSRADVTAG 373
G P G K G KG G P LP P GE G G
Sbjct: 1078 GPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPAGSPGEDGDKGEIG----- 1132
Query: 374 RARPRRRRWEPLRAQRSG--ARPGAPAPPLPCLPPAAVCHALAGAGAPGGRLELGLSPGT 431
EP + G G P PP P G G PG R + G+
Sbjct: 1133 ---------EPGQKGSKGDKGENGPPGPP-GLQGPVGAPGIAGGDGEPGPRGQQGMFGQ- 1181
Query: 432 RLIRGGGAAVPTAAPPAPLPRWGPGPLPGPTG 463
+G A PP P+ G LPGP G
Sbjct: 1182 ---KGDEGARGFPGPPGPIGLQG---LPGPPG 1207
Score = 38.1 bits (87), Expect = 0.018
Identities = 88/363 (24%), Positives = 119/363 (32%), Gaps = 93/363 (25%)
Query: 119 PAGGPAAFCDSTAESKRQLRVGAEGKGGGPQALGRGRRVNGPQGPDRWPNGFRPARQRRT 178
P GGP + GA+G+ G P G R V GP GP P
Sbjct: 542 PVGGPGSS-------------GAKGESGDPGPQGP-RGVQGPPGPTGKPG---------- 577
Query: 179 RRPARALNSGQWSPGE-GRRAALGLEEAGPSLEGIPSSEWDTFSRDKRSLLSSHGSPGTI 237
+R + G+ PGE G + G + G+P D R +R G PG
Sbjct: 578 KRGRPGADGGRGMPGEPGAKGDRGFD-------GLPGLPGDKGHRGERGPQGPPGPPG-- 628
Query: 238 QSSVDIPSLTNTCAGGKDKTPPFSQEVDDPHALSSPFFPKQLGSLSLELPARLPTRCLPS 297
+ G+D ++G P LP +
Sbjct: 629 ----------DDGMRGEDG---------------------EIG------PRGLPGE---A 648
Query: 298 PPRSLVAP-SESGSAGRRG--GTNGVATPREKLGGKRGVGRKGQGTRLGAPHSLPPPPPF 354
PR L+ P G+ G+ G G +G P+ +G + G GQ G P LP P
Sbjct: 649 GPRGLLGPRGTPGAPGQPGMAGVDGPPGPKGNMGPQGEPGPPGQQGNPG-PQGLPGPQGP 707
Query: 355 RTGRGEGG--GGGSRADVTAGRARPRRRRWEPLRAQRSGARPGAPAPPLPCLPPAAV--- 409
GE G G A + P E ++ P P P+ P V
Sbjct: 708 IGPPGEKGPQGKPGLAGLPGADGPPGHPGKEGQSGEKGALGPPGPQGPIGYPGPRGVKGA 767
Query: 410 --CHALAGA-------GAPGGRLELGLSPGTRLIRGGGAAVPTAAPPAPLPRWGPGPLPG 460
L G+ G PG + ++GL G R G P P R GP PG
Sbjct: 768 DGVRGLKGSKGEKGEDGFPGFKGDMGLK-GDRGEVGQIGPRGEDGPEGPKGRAGPTGDPG 826
Query: 461 PTG 463
P+G
Sbjct: 827 PSG 829
Score = 37.0 bits (84), Expect = 0.041
Identities = 85/337 (25%), Positives = 103/337 (30%), Gaps = 81/337 (24%)
Query: 140 GAEGKGGGPQALGRGRRVNGPQGPDRWPNGFR--PARQRRTRRPARALNSGQWSPGE-GR 196
G +G+ G P + G V GP GP P G P Q T P PG+ G
Sbjct: 423 GEKGQKGEPAVVEPGMLVEGPPGP-AGPAGIMGPPGLQGPTGPPG--------DPGDRGP 473
Query: 197 RAALGLEEAGPSLEGIPSSEWDTFSRDKRSLLSSHGSPGTIQSSVDIPSLTNTCAGGKDK 256
GL P +G+P G PGT+ L G K
Sbjct: 474 PGRPGL----PGADGLP------------------GPPGTMLM------LPFRYGGDGSK 505
Query: 257 TPPFSQEVDDPHALSSPFFPKQLGSLSLELPARLPTRCLPSP------PRSLVAPSESGS 310
P S + A+ AR+ R P P P + P SG+
Sbjct: 506 GPTISAQEAQAQAILQQ--------------ARIALRGPPGPMGLTGRPGPVGGPGSSGA 551
Query: 311 AGRRGGTNGVATPREKLGGKRGVGRKGQGTRLGAP--HSLPPPPPFRTGRGEGGGGGSRA 368
G G G PR G G+ G+ R GA +P P + RG G G
Sbjct: 552 KGESGDP-GPQGPRGVQGPPGPTGKPGKRGRPGADGGRGMPGEPGAKGDRGFDGLPGLPG 610
Query: 369 DVTAGRARPRRRRWEPLRAQRSGAR--PGAPAPPLPCLPPAAVCHALAGAGAPGGRLELG 426
D G R + P G R G P L G P G L
Sbjct: 611 D--KGHRGERGPQGPPGPPGDDGMRGEDGEIGP-----------RGLPGEAGPRGLLGPR 657
Query: 427 LSPGTRLIRGGGAAVPTAAPPAPLPRWGPGPLPGPTG 463
+PG G PP P GP PGP G
Sbjct: 658 GTPGAP---GQPGMAGVDGPPGPKGNMGPQGEPGPPG 691
Score = 36.6 bits (83), Expect = 0.053
Identities = 88/344 (25%), Positives = 109/344 (31%), Gaps = 67/344 (19%)
Query: 139 VGAEGKGG--GPQALGRGRRVNGPQGPDRWPNGFRPARQRRTRRPARALNSGQWSPGE-- 194
VG G G GP+ +GPQGP ++ P A N G PGE
Sbjct: 1215 VGPMGPPGPPGPRGPQGPNGADGPQGPPGSVGSVGGVGEKG--EPGEAGNPGP--PGEAG 1270
Query: 195 -----GRRAALGLEEAGPSLEGIPSSEWDTFSRDKRSLLSSHGSPGTIQSSVDIPSLTNT 249
G R G EAGP P + ++ G+PG + D
Sbjct: 1271 VGGPKGERGEKG--EAGP-----PGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGPPGEP 1323
Query: 250 CAGGKDKTPPFSQEVDDPHALSSPFFPKQLGSLSLELPARLPTRCLPSPPRSLVAPSESG 309
G+D E DP P + G P PP P +G
Sbjct: 1324 GPAGQDGVGGDKGEDGDPGQPGPPGPSGEAGP--------------PGPPGKRGPPGAAG 1369
Query: 310 SAGRRGGTNGVATPREKLGGKRGVGRKGQGTRLGAPHSLPPPPPFRTGRGEGGGGGSRAD 369
+ GR+G EK G KG+ G P P P +G G +
Sbjct: 1370 AEGRQG---------EK-------GAKGEAGAEGPPGKTGPVGP------QGPAGKPGPE 1407
Query: 370 VTAGRARPRRRRWEPLRAQRSGARPGAPAPP-LPCLPPAAVCHALAG-------AGAPGG 421
G P + P A + G PG PP LP L G G PG
Sbjct: 1408 GLRGIPGPVGEQGLPGAAGQDGP-PGPMGPPGLPGLKGDPGSKGEKGHPGLIGLIGPPGE 1466
Query: 422 RLELGLS--PGTRLIRGGGAAVPTAAPPAPLPRWGPGPLPGPTG 463
+ E G PGT+ G P PL GP LPGP G
Sbjct: 1467 QGEKGDRGLPGTQGSPGAKGDGGIPGPAGPLGPPGPPGLPGPQG 1510
>gi|162329583 cleavage and polyadenylation specific factor 6, 68 kD
subunit [Homo sapiens]
Length = 551
Score = 46.2 bits (108), Expect = 7e-05
Identities = 52/166 (31%), Positives = 59/166 (35%), Gaps = 34/166 (20%)
Query: 306 SESGSAGRRGGTNGVATPREKLGGKRGVGRKGQGTRLGAPHSL-PPPPPFRTGR------ 358
S G AG GG++ A P+ G R G G R P PPPPF G+
Sbjct: 181 SGEGKAGPPGGSSRAAFPQGGRGRGRFPGAVPGGDRFPGPAGPGGPPPPFPAGQTPPRPP 240
Query: 359 -GEGGGGGSRADVTAGRARPRRRRWEPLRAQRSGARPGAPAPPLPCLPPAAVCHALAGAG 417
G G G G+ P P R R PP P L P G
Sbjct: 241 LGPPGPPGPPGPPPPGQVLPPPLAGPPNRGDR---------PPPPVLFP----------G 281
Query: 418 APGGRLELGLSPGTRLIRGGGAAVPTAAPP--APLPRWGPGPLPGP 461
P G+ LG P G VP PP P P+ GP P PGP
Sbjct: 282 QPFGQPPLGPLP-----PGPPPPVPGYGPPPGPPPPQQGPPPPPGP 322
Score = 30.0 bits (66), Expect = 5.0
Identities = 25/77 (32%), Positives = 29/77 (37%), Gaps = 10/77 (12%)
Query: 105 TVTSPSRQSETQITPAGGPAAFCDSTAESKRQLRVGAEGKGGGPQALGRGRRVNGPQGPD 164
T S E + P GG S+ G G+G P A+ G R GP GP
Sbjct: 174 TTQSGQMSGEGKAGPPGG---------SSRAAFPQGGRGRGRFPGAVPGGDRFPGPAGPG 224
Query: 165 RWPNGFRPARQRRTRRP 181
P F PA Q R P
Sbjct: 225 GPPPPF-PAGQTPPRPP 240
>gi|239757942 PREDICTED: hypothetical protein XP_002346387 [Homo
sapiens]
Length = 239
Score = 46.2 bits (108), Expect = 7e-05
Identities = 66/207 (31%), Positives = 76/207 (36%), Gaps = 33/207 (15%)
Query: 296 PSPP-RSLVAPSESGSAGRRGGTNGVATPREKLGGKRG-------VGRKGQGTRLGAP-- 345
PSP SL+A S G A R GGK G R G+ G P
Sbjct: 36 PSPVLSSLMAGLSLRSPEVVGRVASRARARTWEGGKEGHAAVPQPATRSGRLGVWGGPLR 95
Query: 346 HSLPPPPPFRTGRGEGGGGGSRADVTAGRARPRRRRWEPLRAQRSGARPGAPAPPLPCLP 405
HS P P + + GGGGG AGR R R R + P PP L
Sbjct: 96 HSWAPRPR-QASQTRGGGGGPSLPGPAGRPSGRSRSRVGARGRLPSGGSHLPQPPRS-LA 153
Query: 406 PAAVCHALAGAGAPGGRLELGLSPGTRLIRGGGAAVPTAAPPAPLPRWGPGPLPGPTGLF 465
A+ A+A ELGLS G R PT APP P PR P P
Sbjct: 154 AASAWQAVAR--------ELGLS-GPR---------PTEAPPFPAPRVRAPPPPQRPAQL 195
Query: 466 DLSVGVSAASSSLGSTELEKNMGSGGG 492
L G+ +SLG T + G G G
Sbjct: 196 RLLAGLRPVVTSLGVT---RRRGRGAG 219
>gi|40353727 synaptopodin isoform A [Homo sapiens]
Length = 903
Score = 46.2 bits (108), Expect = 7e-05
Identities = 79/275 (28%), Positives = 99/275 (36%), Gaps = 79/275 (28%)
Query: 222 RDKRSLLSSHGSPGTIQSSVDIPSLTNTCAGGKDKTPPFSQEVDDPHALSSP---FFPKQ 278
R RS + SPG Q S+ P+ + GG D +P P A +P F +
Sbjct: 615 RPSRSSPGLYTSPG--QDSLQ-PTAVSPPYGG-DISPVSPSRAWSPRAKQAPRPSFSTRN 670
Query: 279 LGSLSLELPARLPTRCLPSPPRSLVAPSESGSAGRRGGTNGVATPREKLGG--KRGVGRK 336
G + + LPT SPP T G + P L G G
Sbjct: 671 AGIEAQDRRESLPT----SPP----------------WTPGASRPPSSLDGWVSPGPWEP 710
Query: 337 GQGTRLGAPHSLPPPPPFRTGRGEGGGGGSRADVTAGRARP-----------------RR 379
G+G+ + +P LPPPPP E R + ARP RR
Sbjct: 711 GRGSSMSSPPPLPPPPPMSPSWSERSVSPLRPET---EARPPSRQLQALLARNIINAARR 767
Query: 380 RRWEPLRAQRSGARPGAP--APPLPCLPPAAVCHALAGAGAPGGRLELGLSPGTRLIRGG 437
+ P A RP +P APP P PP P R+ SP + R G
Sbjct: 768 KSASPRSAGAENPRPFSPPRAPPPPPPPP-----------PPPPRMR---SP--QPARPG 811
Query: 438 GAAVPTAA----PPAPLPRWGP-------GPLPGP 461
AAVP AA P +PLP GP PLP P
Sbjct: 812 SAAVPGAAFAPIPRSPLPA-GPSSCTSPRSPLPAP 845
>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
Length = 653
Score = 46.2 bits (108), Expect = 7e-05
Identities = 47/178 (26%), Positives = 63/178 (35%), Gaps = 11/178 (6%)
Query: 296 PSPPRSLVAPSESGSAGRRGGTNG-----VATPREKLGGKRGVGRKGQGTRLGAPHSLPP 350
PS +P +G +G+R G +G +P +K R P +
Sbjct: 302 PSGGSGWGSPQRNGGSGQRSGAHGGRPGSAHSPPDKPSSPSPRVRDKAAAAAPTPPARGK 361
Query: 351 PPPFRTGRGEGGGGGSRADVTAGRARPRRRRWEPLRA-----QRSGARPGAPAPPLPCLP 405
P G G RA AGR R RRRR R+ +R G R PAPP
Sbjct: 362 ESPSPRSAPSSQGRGGRAAGGAGRRRRRRRRRRRSRSSASAPRRRGRRRPRPAPPRGSSR 421
Query: 406 PAAVCHALAGAGAPGGRLELGLSPGTRLIRGGGAAVPTAAPPAPLPRWGPGPLPGPTG 463
+ + + +G+ G G PG+ GG PP P P PG G
Sbjct: 422 SLSRARSSSDSGSGRGAPGPGPEPGSERGHGGHGKRAKERPPRARPA-STSPSPGAHG 478
Score = 38.5 bits (88), Expect = 0.014
Identities = 65/254 (25%), Positives = 83/254 (32%), Gaps = 71/254 (27%)
Query: 148 PQALGRGRRVNGPQGPDRWPNGFRPARQRRTRRPARALNSGQWSPGEGRRAALGLEEAGP 207
P + GRG R G G R+RR RR R+ +S GRR G
Sbjct: 370 PSSQGRGGRAAGGAG----------RRRRRRRRRRRSRSSASAPRRRGRRRPRPAPPRG- 418
Query: 208 SLEGIPSSEWDTFSRDKRSLLSSHGSPGTIQSSVDIPSLTNTCAGGKDKTPPFSQEVDDP 267
SS + +R S G+PG P S+
Sbjct: 419 ------SSRSLSRARSSSDSGSGRGAPGP-------------------GPEPGSERGHGG 453
Query: 268 HALSSPFFPKQLGSLSLELPARL-PTRCLPSPPRSLVAPSESGSAGRRGGTNGVATPRE- 325
H G + E P R P PSP G+ GRRGG G ++ R
Sbjct: 454 H-----------GKRAKERPPRARPASTSPSP----------GAHGRRGGPEGKSSSRSP 492
Query: 326 -----KLGGKRGVGRKGQGTRLGAPHS-----LPPPPPFRTGRGEGGGGGSRADVTAGRA 375
R + + PHS P P R GEG S A+ T RA
Sbjct: 493 GPHPRSWSSSRSPSKSRSRSAEKRPHSPSRSPSPKKPLSRDKDGEGRARHSEAEAT--RA 550
Query: 376 RPRRRRWEPLRAQR 389
R R R + P+R +R
Sbjct: 551 RRRSRSYSPIRKRR 564
Score = 35.0 bits (79), Expect = 0.16
Identities = 61/243 (25%), Positives = 80/243 (32%), Gaps = 28/243 (11%)
Query: 165 RWPNGFRPARQRRTRRPARALNSGQWSPGEGRRAALGLEEAGPSLEGIPSSEWDTFSRDK 224
R P+ P + R+ +SG SP +G S G P + R
Sbjct: 273 RSPSRLSPKHRDEGRKTGSQRSSGSRSPSP----------SGGSGWGSPQRNGGSGQRS- 321
Query: 225 RSLLSSHGS-PGTIQSSVDIPSLTNTC----AGGKDKTPPFSQEVDDPHALSSPFFPKQL 279
+HG PG+ S D PS + A TPP ++ + P S+P +
Sbjct: 322 ----GAHGGRPGSAHSPPDKPSSPSPRVRDKAAAAAPTPP-ARGKESPSPRSAPSSQGRG 376
Query: 280 GSLSLELPARLPTRCLPSPPRSLVAPSESGSAGRRGGTNGVATPREKLGGKRGVGRKGQG 339
G + R R RS S SA RR G P G R + R
Sbjct: 377 GRAAGGAGRRRRRRRRRRRSRS------SASAPRRRGRRR-PRPAPPRGSSRSLSRARSS 429
Query: 340 TRLGAPHSLPPPPPFRTGRGEGGGGGSRADVTAGRARPRRRRWEPLRAQRSGARPGAPAP 399
+ G+ P P P GG G RA RARP P R G G +
Sbjct: 430 SDSGSGRGAPGPGPEPGSERGHGGHGKRAKERPPRARPASTSPSPGAHGRRGGPEGKSSS 489
Query: 400 PLP 402
P
Sbjct: 490 RSP 492
Score = 34.3 bits (77), Expect = 0.27
Identities = 34/117 (29%), Positives = 50/117 (42%), Gaps = 7/117 (5%)
Query: 296 PSPPR-SLVAPSESGSAGRRGGTNGVATPREKLGGKRGVGRKGQGTRLGAPHSLPP---P 351
P+PPR S + S + S+ G G P + G +RG G G+ + P + P P
Sbjct: 413 PAPPRGSSRSLSRARSSSDSGSGRGAPGPGPEPGSERGHGGHGKRAKERPPRARPASTSP 472
Query: 352 PPFRTGR--GEGGGGGSRADVTAGRARPRRRRWEPLRAQRSGARPGAPA-PPLPCLP 405
P GR G G SR+ R+ R R++ + RP +P+ P P P
Sbjct: 473 SPGAHGRRGGPEGKSSSRSPGPHPRSWSSSRSPSKSRSRSAEKRPHSPSRSPSPKKP 529
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 46.2 bits (108), Expect = 7e-05
Identities = 74/297 (24%), Positives = 110/297 (37%), Gaps = 42/297 (14%)
Query: 108 SPSRQSETQITPAGGPAAFCDSTAESKRQLRVGAEGKGGGPQALGRGRRVNGPQGPDRWP 167
SP +SE+ +P DS A+++ LR + G P+ + R P R
Sbjct: 1552 SPQERSESDSSP--------DSKAKTRTPLRQRSRS-GSSPEVDSKSRL-----SPRRSR 1597
Query: 168 NGFRPARQRRTRRPARALNSGQWSPGEGRRAALGLEEAGPSLEGIPSSEWDTFSRDKRSL 227
+G P + + R RA + SP E P+ +P S R
Sbjct: 1598 SGSSPEVKDKPRAAPRAQSGSDSSP----------EPKAPAPRALPRRSRSGSSSKGRGP 1647
Query: 228 LSSHGSPGTIQSSVDIPSLTNTCAGGKDKTP-PFSQEVDDPHALSSPFFPK--------- 277
S GS T +SS + P + T G +P P ++ P SS P+
Sbjct: 1648 -SPEGSSST-ESSPEHPPKSRTARRGSRSSPEPKTKSRTPPRRRSSRSSPELTRKARLSR 1705
Query: 278 --QLGSLSLELPARLPTRCLPSPPRSLVAPSESGSAGRRGGTNGVATPREKLGGKRGVGR 335
+ S S E +R P R SP S P+E + RR ++PR K +RG
Sbjct: 1706 RSRSASSSPETRSRTPPRHRRSPSVSSPEPAEKSRSSRR--RRSASSPRTKTTSRRGRSP 1763
Query: 336 KGQGTRLGAPHSLPPPPPFRTGRGEGGGGGSRADVTAGRARPRRRRWEPLRAQRSGA 392
+ L S RT R G S++ T+ R + R R R +R G+
Sbjct: 1764 SPKPRGLQRSRSRSRREKTRTTRRRDRSGSSQS--TSRRRQRSRSRSRVTRRRRGGS 1818
Score = 42.4 bits (98), Expect = 0.001
Identities = 62/224 (27%), Positives = 89/224 (39%), Gaps = 47/224 (20%)
Query: 213 PSSEWDTFSRDKRSLLSSHGSPGTIQSSV--DIPSLTNTCA---GGKDK---TPPFSQEV 264
PSS ++ +DK+ ++ SP +SS + P+ T A GG + T P SQE
Sbjct: 331 PSSPYEDKDKDKKEKSATRPSPSPERSSTGPEPPAPTPLLAERHGGSPQPLATTPLSQEP 390
Query: 265 DDPHALSSPFFPK----------QLGSLSLELPARLPTRCL------PSPPRSLVAPSE- 307
+P + +SP + Q S P+ PT+ P P+ AP
Sbjct: 391 VNPPSEASPTRDRSPPKSPEKLPQSSSSESSPPSPQPTKVSRHASSSPESPKPAPAPGSH 450
Query: 308 ---SGSAGRRGGTNGVA--------TPREKLG-------GKRGVGRKGQGTRLGAPHSLP 349
S S + ++G A TP ++G KRG R T+ G HS
Sbjct: 451 REISSSPTSKNRSHGRAKRDKSHSHTPSRRMGRSRSPATAKRGRSRSRTPTKRG--HSRS 508
Query: 350 PPPPFRTGRGEGGGGGSRADVTAGRAR-PRRRRWEPLR-AQRSG 391
P +R R G SR+ GR+R P+R W R QR G
Sbjct: 509 RSPQWRRSRSAQRWGRSRSPQRRGRSRSPQRPGWSRSRNTQRRG 552
Score = 41.2 bits (95), Expect = 0.002
Identities = 88/388 (22%), Positives = 136/388 (35%), Gaps = 82/388 (21%)
Query: 34 VGEQLESWRSWRKDVAGCSSPTPIPEFGAAAPTKSALQVQVVPSSQAVEFGQHPGRGLQD 93
+G++ S S DV +SP E ++ +K+ + P Q G P +
Sbjct: 1533 LGQRSRSGSSQELDVKPSASPQERSESDSSPDSKAKTRT---PLRQRSRSGSSPEVDSKS 1589
Query: 94 RTQPTRIIRGCTVTSPSRQSETQITPAGGPAAFCDSTAESK--------RQLRVGAEGKG 145
R P R G +SP + + + P + DS+ E K R+ R G+ KG
Sbjct: 1590 RLSPRRSRSG---SSPEVKDKPRAAPRAQSGS--DSSPEPKAPAPRALPRRSRSGSSSKG 1644
Query: 146 GGPQALGRGRRVNGPQGPDRWPNGFR-----PARQRRTRRPARALNSGQWSPGEGRRAAL 200
GP G + P+ P + R P + ++R P R S + SP R+A
Sbjct: 1645 RGPSPEGSSSTESSPEHPPKSRTARRGSRSSPEPKTKSRTPPRR-RSSRSSPELTRKAR- 1702
Query: 201 GLEEAGPSLEGIPSSEWDTFSRDKRSLLSSHGSPGTIQSSVDIPSLTNTCAGGKDKTPPF 260
L S P + T R +RS PS+++ K ++
Sbjct: 1703 -LSRRSRSASSSPETRSRTPPRHRRS-----------------PSVSSPEPAEKSRSSRR 1744
Query: 261 SQEVDDPHALSSPFFPKQLGSLSLELPARLPTRCLPSP-PRSLVAPSESGSAGRRGGTNG 319
+ P ++ + PSP PR L S S RR T
Sbjct: 1745 RRSASSPRTKTTSRRGRS-----------------PSPKPRGL---QRSRSRSRREKTR- 1783
Query: 320 VATPREKLGGKRGVGRKGQGTRLGAPHSLPPPPPFRTGRGEGGGGG--------SRADVT 371
R++ G + R+ Q +R + R R GG G + T
Sbjct: 1784 TTRRRDRSGSSQSTSRRRQRSRSRS----------RVTRRRRGGSGYHSRSPARQESSRT 1833
Query: 372 AGRARPRRRRWEPLRAQRSGARPGAPAP 399
+ R R R R P +RS +R +PAP
Sbjct: 1834 SSRRRRGRSRTPPTSRKRSRSRT-SPAP 1860
Score = 32.7 bits (73), Expect = 0.77
Identities = 55/230 (23%), Positives = 80/230 (34%), Gaps = 22/230 (9%)
Query: 21 RRPGGKRGTEIRAVGEQLESWRSWRKDVAGCSSPTPIPEFGAAAPTKSALQVQVVPSSQA 80
+RPG R + G RS R+ + SP + P + P+ +
Sbjct: 538 QRPGWSRSRNTQRRGRS----RSARRGRSHSRSPATRGRSRSRTPARRGRSRSRTPARRR 593
Query: 81 VEFGQHPGRGLQDRTQPTRIIRGCTVTSPSRQSETQITPAGGPAAFCDSTAESKRQLRVG 140
R + RT P R R + T R+S T+ P + S+ R
Sbjct: 594 SRSRTPTRRRSRSRT-PARRGRSRSRTPARRRSRTR-----SPVR---RRSRSRSPARRS 644
Query: 141 AEGKGGGPQALGRGR-RVNGPQGPDRWPNGFRPARQRRTRRPARALNSGQWSPGEGRRAA 199
+ P GR R R +G R R + + R+R PAR S +P GR +
Sbjct: 645 GRSRSRTPARRGRSRSRTPARRGRSRSRTPARRSGRSRSRTPARRGRSRSRTPRRGRSRS 704
Query: 200 LGLEEAGPSLEGIP--------SSEWDTFSRDKRSLLSSHGSPGTIQSSV 241
L G S P SSE SR + S+ SP +S +
Sbjct: 705 RSLVRRGRSHSRTPQRRGRSGSSSERKNKSRTSQRRSRSNSSPEMKKSRI 754
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.135 0.418
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,955,806
Number of Sequences: 37866
Number of extensions: 1831584
Number of successful extensions: 12950
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 1162
Number of HSP's that attempted gapping in prelim test: 9411
Number of HSP's gapped (non-prelim): 3882
length of query: 492
length of database: 18,247,518
effective HSP length: 106
effective length of query: 386
effective length of database: 14,233,722
effective search space: 5494216692
effective search space used: 5494216692
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.