Guide to the Human Genome
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Name: LOC100292124 Sequence: fasta or formatted (239aa) NCBI GI: 239757942
Description:

PREDICTED: hypothetical protein XP_002346387

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.3         27           3
 C cysteine            1.3          3           1
 D aspartate           0.8          2           1
 E glutamate           2.9          7           1
 F phenylalanine       1.3          3           1
 G glycine            14.2         34           5
 H histidine           1.3          3           1
 I isoleucine          0.0          0           0
 K lysine              1.3          3           1
 L leucine            12.1         29           2
 M methionine          1.3          3           1
 N asparagine          0.0          0           0
 P proline            13.8         33           4
 Q glutamine           2.9          7           1
 R arginine           14.2         34           3
 S serine              9.6         23           2
 T threonine           3.3          8           1
 V valine              5.9         14           2
 W tryptophan          2.1          5           1
 Y tyrosine            0.4          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002346387 
EMID2                 0.054   EMI domain containing 2 
LOC100292848          0.050   PREDICTED: hypothetical protein 
TAF4                  0.047   TBP-associated factor 4 
LOC100290783          0.045   PREDICTED: hypothetical protein XP_002347614 
LOC100288864          0.045   PREDICTED: hypothetical protein XP_002343435 
HCN4                  0.043   hyperpolarization activated cyclic nucleotide-gated p...
LOC100127891          0.043   PREDICTED: hypothetical protein 
LOC100131102          0.043   PREDICTED: hypothetical protein 
LOC100131102          0.043   PREDICTED: hypothetical protein 
UNCX                  0.041   UNC homeobox 
LOC100287063          0.041   PREDICTED: hypothetical protein 
BAT2                  0.041   HLA-B associated transcript-2 
FLJ31945              0.041   PREDICTED: hypothetical protein 
LOC100287587          0.041   PREDICTED: hypothetical protein XP_002343392 
FLJ31945              0.039   PREDICTED: hypothetical protein 
FLJ31945              0.039   PREDICTED: hypothetical protein 
PLEKHG5               0.039   pleckstrin homology domain containing family G membe...
PLEKHG5               0.039   pleckstrin homology domain containing family G memb...
PLEKHG5               0.039   pleckstrin homology domain containing family G memb...
PLEKHG5               0.039   pleckstrin homology domain containing family G memb...
PLEKHG5               0.039   pleckstrin homology domain containing family G memb...
COL1A1                0.039   alpha 1 type I collagen preproprotein 
LOC100287063          0.039   PREDICTED: hypothetical protein XP_002342368 
MBD2                  0.039   methyl-CpG binding domain protein 2 testis-specific i...
MBD2                  0.039   methyl-CpG binding domain protein 2 isoform 1 
COL9A3                0.039   alpha 3 type IX collagen 
LOC100127930          0.037   PREDICTED: hypothetical protein 
TRIO                  0.037   triple functional domain (PTPRF interacting) 
SMARCA4               0.037   SWI/SNF-related matrix-associated actin-dependent r...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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