Guide to the Human Genome
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Name: LOC100132614 Sequence: fasta or formatted (230aa) NCBI GI: 239750721
Description:

PREDICTED: hypothetical protein, partial

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             2.2          5           1
 C cysteine            3.0          7           1
 D aspartate           0.0          0           0
 E glutamate           0.0          0           0
 F phenylalanine       3.5          8           1
 G glycine             0.0          0           0
 H histidine          20.0         46           1
 I isoleucine         18.7         43           1
 K lysine              0.0          0           0
 L leucine             6.5         15           1
 M methionine          2.2          5           1
 N asparagine          0.0          0           0
 P proline            16.1         37           2
 Q glutamine           0.0          0           0
 R arginine            0.0          0           0
 S serine             21.3         49           2
 T threonine           2.6          6           1
 V valine              0.9          2           1
 W tryptophan          0.0          0           0
 Y tyrosine            3.0          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein, partial 
LOC100131525          0.413   PREDICTED: hypothetical protein 
LOC100133439          0.411   PREDICTED: hypothetical protein 
LOC100288473          0.409   PREDICTED: hypothetical protein XP_002343336 
LOC100288786          0.403   PREDICTED: hypothetical protein XP_002343819 
LOC100291393          0.399   PREDICTED: hypothetical protein XP_002347924 
LOC100133981          0.395   PREDICTED: hypothetical protein 
LOC100293557          0.367   PREDICTED: hypothetical protein 
LOC100133173          0.165   PREDICTED: hypothetical protein 
LOC100133553          0.132   PREDICTED: hypothetical protein, partial 
LOC100288317          0.127   PREDICTED: hypothetical protein XP_002342505 
LOC100134060          0.125   PREDICTED: hypothetical protein 
LOC100134332          0.125   PREDICTED: hypothetical protein, partial 
LOC100132983          0.123   PREDICTED: hypothetical protein 
LOC100131203          0.119   PREDICTED: hypothetical protein 
LOC100133515          0.115   PREDICTED: hypothetical protein 
PRR21                 0.113   proline rich 21 
LOC100133741          0.113   PREDICTED: hypothetical protein 
LOC100132016          0.106   PREDICTED: hypothetical protein 
LOC100129642          0.104   PREDICTED: hypothetical protein 
LOC100134411          0.102   PREDICTED: hypothetical protein 
LOC100133844          0.102   PREDICTED: hypothetical protein 
LOC100128267          0.102   PREDICTED: hypothetical protein, partial 
LOC100131203          0.100   PREDICTED: similar to serine/threonine-protein kina...
LOC100131203          0.100   PREDICTED: similar to serine/threonine-protein kina...
LOC100134395          0.092   PREDICTED: hypothetical protein, partial 
LOC100132016          0.092   PREDICTED: hypothetical protein 
LOC100134279          0.090   PREDICTED: hypothetical protein, partial 
LOC100132107          0.090   PREDICTED: hypothetical protein 
LOC100134325          0.090   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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