Guide to the Human Genome
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Name: PRR21 Sequence: fasta or formatted (389aa) NCBI GI: 124249376
Description:

proline rich 21

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.4         25           1
 C cysteine            3.1         12           1
 D aspartate           0.0          0           0
 E glutamate           0.0          0           0
 F phenylalanine       8.0         31           1
 G glycine             3.9         15           1
 H histidine          10.8         42           1
 I isoleucine          1.3          5           2
 K lysine              0.3          1           1
 L leucine            12.1         47           3
 M methionine          3.3         13           1
 N asparagine          0.8          3           1
 P proline            17.7         69           2
 Q glutamine           1.0          4           2
 R arginine            5.1         20           1
 S serine             15.9         62           3
 T threonine           6.9         27           2
 V valine              2.6         10           1
 W tryptophan          0.3          1           1
 Y tyrosine            0.5          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   proline rich 21 
LOC100290755          0.434   PREDICTED: hypothetical protein XP_002346496 
LOC100132614          0.066   PREDICTED: hypothetical protein, partial 
LOC100288473          0.066   PREDICTED: hypothetical protein XP_002343336 
SF3A2                 0.060   splicing factor 3a, subunit 2 
LOC100291393          0.058   PREDICTED: hypothetical protein XP_002347924 
LOC100293557          0.054   PREDICTED: hypothetical protein 
MUC2                  0.052   mucin 2 precursor 
LOC100128719          0.048   PREDICTED: hypothetical protein, partial 
LOC100128719          0.048   PREDICTED: hypothetical protein, partial 
LOC100134147          0.047   PREDICTED: hypothetical protein 
LOC100131525          0.042   PREDICTED: hypothetical protein 
LOC100288786          0.041   PREDICTED: hypothetical protein XP_002343819 
RAI2                  0.039   retinoic acid induced 2 
LOC284297             0.039   hypothetical protein LOC284297 
LOC100133981          0.039   PREDICTED: hypothetical protein 
LOC100133439          0.039   PREDICTED: hypothetical protein 
FLJ22184              0.037   PREDICTED: hypothetical protein FLJ22184 
MLL2                  0.037   myeloid/lymphoid or mixed-lineage leukemia 2 
NACA                  0.036   nascent polypeptide-associated complex alpha subuni...
FLJ22184              0.034   PREDICTED: hypothetical protein FLJ22184 
RERE                  0.034   atrophin-1 like protein isoform b 
RERE                  0.034   atrophin-1 like protein isoform a 
RERE                  0.034   atrophin-1 like protein isoform a 
FLJ22184              0.034   PREDICTED: hypothetical protein LOC80164 
ATN1                  0.033   atrophin-1 
ATN1                  0.033   atrophin-1 
COL27A1               0.031   collagen, type XXVII, alpha 1 
POLR2A                0.031   DNA-directed RNA polymerase II A 
WASF1                 0.029   Wiskott-Aldrich syndrome protein family member 1 [Ho...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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