Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100133981 Sequence: fasta or formatted (394aa) NCBI GI: 239755446
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.1         20           2
 C cysteine            2.0          8           1
 D aspartate           2.5         10           1
 E glutamate           2.0          8           1
 F phenylalanine       3.0         12           1
 G glycine             5.6         22           3
 H histidine          11.4         45           2
 I isoleucine          9.9         39           2
 K lysine              1.3          5           1
 L leucine             8.9         35           3
 M methionine          1.5          6           1
 N asparagine          1.8          7           1
 P proline            12.9         51           2
 Q glutamine           2.8         11           1
 R arginine            3.8         15           2
 S serine             16.0         63           2
 T threonine           3.8         15           1
 V valine              3.3         13           2
 W tryptophan          1.3          5           1
 Y tyrosine            1.0          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100133439          0.732   PREDICTED: hypothetical protein 
LOC100131525          0.260   PREDICTED: hypothetical protein 
LOC100291393          0.253   PREDICTED: hypothetical protein XP_002347924 
LOC100288473          0.253   PREDICTED: hypothetical protein XP_002343336 
LOC100288786          0.235   PREDICTED: hypothetical protein XP_002343819 
LOC100132614          0.233   PREDICTED: hypothetical protein, partial 
LOC100293557          0.222   PREDICTED: hypothetical protein 
LOC100133553          0.054   PREDICTED: hypothetical protein, partial 
LOC100133173          0.054   PREDICTED: hypothetical protein 
LOC100134060          0.046   PREDICTED: hypothetical protein 
LOC100134332          0.041   PREDICTED: hypothetical protein, partial 
LOC100288317          0.041   PREDICTED: hypothetical protein XP_002342505 
LOC100133515          0.040   PREDICTED: hypothetical protein 
PRR21                 0.040   proline rich 21 
SF3A2                 0.038   splicing factor 3a, subunit 2 
LOC100132983          0.038   PREDICTED: hypothetical protein 
LOC100290755          0.036   PREDICTED: hypothetical protein XP_002346496 
LOC100131203          0.036   PREDICTED: hypothetical protein 
LOC100129802          0.036   PREDICTED: hypothetical protein, partial 
LOC100128719          0.035   PREDICTED: hypothetical protein, partial 
LOC100128719          0.035   PREDICTED: hypothetical protein, partial 
LOC100134325          0.035   PREDICTED: hypothetical protein 
LOC100129802          0.033   PREDICTED: hypothetical protein 
LOC284297             0.032   hypothetical protein LOC284297 
LOC100128267          0.028   PREDICTED: hypothetical protein, partial 
LOC100133741          0.027   PREDICTED: hypothetical protein 
LOC100129642          0.027   PREDICTED: hypothetical protein 
LOC100290974          0.027   PREDICTED: hypothetical protein XP_002346910 
PHLDA1                0.027   pleckstrin homology-like domain, family A, member 1 ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press