Guide to the Human Genome
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Name: LOC100133439 Sequence: fasta or formatted (295aa) NCBI GI: 239749927
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.1          9           2
 C cysteine            1.4          4           1
 D aspartate           1.4          4           1
 E glutamate           2.4          7           1
 F phenylalanine       2.7          8           1
 G glycine             4.7         14           3
 H histidine          13.9         41           1
 I isoleucine         12.9         38           2
 K lysine              1.0          3           1
 L leucine             7.1         21           3
 M methionine          1.4          4           1
 N asparagine          1.0          3           1
 P proline            13.9         41           2
 Q glutamine           2.4          7           1
 R arginine            3.1          9           2
 S serine             18.3         54           2
 T threonine           3.4         10           1
 V valine              3.4         10           2
 W tryptophan          1.4          4           1
 Y tyrosine            1.4          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100133981          0.980   PREDICTED: hypothetical protein 
LOC100131525          0.354   PREDICTED: hypothetical protein 
LOC100288473          0.340   PREDICTED: hypothetical protein XP_002343336 
LOC100291393          0.332   PREDICTED: hypothetical protein XP_002347924 
LOC100288786          0.326   PREDICTED: hypothetical protein XP_002343819 
LOC100132614          0.317   PREDICTED: hypothetical protein, partial 
LOC100293557          0.307   PREDICTED: hypothetical protein 
LOC100133553          0.076   PREDICTED: hypothetical protein, partial 
LOC100133173          0.074   PREDICTED: hypothetical protein 
LOC100288317          0.064   PREDICTED: hypothetical protein XP_002342505 
LOC100134060          0.061   PREDICTED: hypothetical protein 
LOC100134332          0.061   PREDICTED: hypothetical protein, partial 
LOC100132983          0.060   PREDICTED: hypothetical protein 
LOC100133515          0.055   PREDICTED: hypothetical protein 
LOC100131203          0.053   PREDICTED: hypothetical protein 
LOC100134325          0.053   PREDICTED: hypothetical protein 
PRR21                 0.053   proline rich 21 
LOC100129802          0.051   PREDICTED: hypothetical protein, partial 
LOC100290755          0.050   PREDICTED: hypothetical protein XP_002346496 
SF3A2                 0.048   splicing factor 3a, subunit 2 
LOC100128719          0.045   PREDICTED: hypothetical protein, partial 
LOC100128719          0.045   PREDICTED: hypothetical protein, partial 
LOC100129642          0.045   PREDICTED: hypothetical protein 
LOC100128267          0.045   PREDICTED: hypothetical protein, partial 
LOC100129802          0.041   PREDICTED: hypothetical protein 
LOC284297             0.040   hypothetical protein LOC284297 
LOC100293369          0.040   PREDICTED: hypothetical protein 
LOC100290974          0.040   PREDICTED: hypothetical protein XP_002346910 
LOC100133741          0.040   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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