Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100131525 Sequence: fasta or formatted (279aa) NCBI GI: 239755199
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.3         12           1
 C cysteine            0.7          2           1
 D aspartate           0.7          2           1
 E glutamate           2.9          8           2
 F phenylalanine       1.1          3           1
 G glycine             5.0         14           1
 H histidine          15.4         43           2
 I isoleucine         10.0         28           1
 K lysine              0.4          1           1
 L leucine             7.2         20           3
 M methionine          0.4          1           1
 N asparagine          0.7          2           1
 P proline            20.8         58           2
 Q glutamine           1.8          5           1
 R arginine            3.2          9           1
 S serine             13.6         38           2
 T threonine           7.9         22           1
 V valine              2.5          7           1
 W tryptophan          0.4          1           1
 Y tyrosine            1.1          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100288473          0.420   PREDICTED: hypothetical protein XP_002343336 
LOC100291393          0.396   PREDICTED: hypothetical protein XP_002347924 
LOC100293557          0.382   PREDICTED: hypothetical protein 
LOC100133439          0.365   PREDICTED: hypothetical protein 
LOC100133981          0.358   PREDICTED: hypothetical protein 
LOC100132614          0.338   PREDICTED: hypothetical protein, partial 
LOC100288786          0.329   PREDICTED: hypothetical protein XP_002343819 
LOC100134147          0.116   PREDICTED: hypothetical protein 
LOC100128719          0.113   PREDICTED: hypothetical protein, partial 
LOC100128719          0.113   PREDICTED: hypothetical protein, partial 
SF3A2                 0.092   splicing factor 3a, subunit 2 
LOC284297             0.075   hypothetical protein LOC284297 
RERE                  0.073   atrophin-1 like protein isoform b 
RERE                  0.073   atrophin-1 like protein isoform a 
RERE                  0.073   atrophin-1 like protein isoform a 
FLJ22184              0.070   PREDICTED: hypothetical protein FLJ22184 
LOC100133553          0.068   PREDICTED: hypothetical protein, partial 
RBM33                 0.067   RNA binding motif protein 33 
IQSEC2                0.067   IQ motif and Sec7 domain 2 isoform1 
ANK2                  0.063   ankyrin 2 isoform 1 
PRR21                 0.063   proline rich 21 
MUC2                  0.061   mucin 2 precursor 
CREB5                 0.060   cAMP responsive element binding protein 5 isoform de...
CREB5                 0.060   cAMP responsive element binding protein 5 isoform be...
CREB5                 0.060   cAMP responsive element binding protein 5 isoform ga...
CREB5                 0.060   cAMP responsive element binding protein 5 isoform al...
LOC100133173          0.060   PREDICTED: hypothetical protein 
CCNK                  0.060   cyclin K isoform 1 
CD248                 0.056   tumor endothelial marker 1 precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press