Guide to the Human Genome
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Name: LOC100288786 Sequence: fasta or formatted (217aa) NCBI GI: 239746716
Description:

PREDICTED: hypothetical protein XP_002343819

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             1.4          3           1
 C cysteine            1.4          3           1
 D aspartate           0.5          1           1
 E glutamate           0.9          2           1
 F phenylalanine       1.8          4           1
 G glycine             1.8          4           1
 H histidine          18.4         40           1
 I isoleucine         16.1         35           1
 K lysine              1.4          3           1
 L leucine             4.1          9           2
 M methionine          0.5          1           1
 N asparagine          0.9          2           1
 P proline            19.8         43           2
 Q glutamine           0.5          1           1
 R arginine            1.8          4           1
 S serine             18.4         40           2
 T threonine           5.5         12           1
 V valine              2.3          5           2
 W tryptophan          0.0          0           0
 Y tyrosine            2.3          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343819 
LOC100131525          0.449   PREDICTED: hypothetical protein 
LOC100288473          0.447   PREDICTED: hypothetical protein XP_002343336 
LOC100132614          0.436   PREDICTED: hypothetical protein, partial 
LOC100133439          0.434   PREDICTED: hypothetical protein 
LOC100133981          0.427   PREDICTED: hypothetical protein 
LOC100291393          0.419   PREDICTED: hypothetical protein XP_002347924 
LOC100293557          0.361   PREDICTED: hypothetical protein 
LOC100133553          0.126   PREDICTED: hypothetical protein, partial 
LOC100133173          0.115   PREDICTED: hypothetical protein 
LOC100134060          0.110   PREDICTED: hypothetical protein 
LOC100288317          0.106   PREDICTED: hypothetical protein XP_002342505 
SF3A2                 0.104   splicing factor 3a, subunit 2 
LOC100131203          0.099   PREDICTED: hypothetical protein 
LOC100134147          0.097   PREDICTED: hypothetical protein 
LOC100134332          0.093   PREDICTED: hypothetical protein, partial 
LOC100128719          0.088   PREDICTED: hypothetical protein, partial 
LOC100128719          0.088   PREDICTED: hypothetical protein, partial 
LOC100133515          0.086   PREDICTED: hypothetical protein 
LOC100289649          0.086   PREDICTED: hypothetical protein XP_002342367 
LOC100132107          0.075   PREDICTED: hypothetical protein 
LOC100134325          0.073   PREDICTED: hypothetical protein 
LOC100129802          0.073   PREDICTED: hypothetical protein, partial 
PRR21                 0.073   proline rich 21 
LOC100290755          0.073   PREDICTED: hypothetical protein XP_002346496 
LOC100129642          0.070   PREDICTED: hypothetical protein 
LOC100293369          0.070   PREDICTED: hypothetical protein 
LOC100290974          0.070   PREDICTED: hypothetical protein XP_002346910 
LOC100133844          0.068   PREDICTED: hypothetical protein 
LOC100129802          0.068   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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