Guide to the Human Genome
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Name: LOC100290215 Sequence: fasta or formatted (171aa) NCBI GI: 239749318
Description:

PREDICTED: hypothetical protein XP_002346994

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.3          9           2
 C cysteine            2.3          4           1
 D aspartate           4.7          8           1
 E glutamate           7.0         12           2
 F phenylalanine       4.7          8           2
 G glycine            12.9         22           3
 H histidine           2.9          5           2
 I isoleucine          1.2          2           1
 K lysine              3.5          6           2
 L leucine             5.8         10           1
 M methionine          2.9          5           1
 N asparagine          1.2          2           1
 P proline             5.8         10           1
 Q glutamine           3.5          6           1
 R arginine            8.2         14           2
 S serine              8.8         15           1
 T threonine           4.7          8           1
 V valine             11.7         20           2
 W tryptophan          1.2          2           1
 Y tyrosine            1.8          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002346994 
ACTR3B                0.565   actin-related protein 3-beta isoform 1 
ACTR3                 0.535   ARP3 actin-related protein 3 homolog 
ACTR3B                0.149   actin-related protein 3-beta isoform 2 
LOC646821             0.106   PREDICTED: similar to actin, gamma 1 
ACTR1A                0.106   ARP1 actin-related protein 1 homolog A, centractin al...
ACTR1B                0.106   ARP1 actin-related protein 1 homolog B, centractin b...
POTEE                 0.103   protein expressed in prostate, ovary, testis, and p...
ACTBL3                0.103   PREDICTED: actin, beta-like 3 
LOC653781             0.103   PREDICTED: similar to protein expressed in prostate...
LOC653269             0.103   PREDICTED: similar to protein expressed in prostate...
LOC653269             0.103   PREDICTED: similar to protein expressed in prostate,...
POTEF                 0.103   prostate, ovary, testis expressed protein on chromo...
ACTBL3                0.100   PREDICTED: actin, beta-like 3 
ACTBL3                0.100   PREDICTED: kappa-actin 
ACTB                  0.100   beta actin 
ACTG1                 0.100   actin, gamma 1 propeptide 
ACTA1                 0.100   actin, alpha 1, skeletal muscle 
ACTA2                 0.097   alpha 2 actin 
ACTA2                 0.097   alpha 2 actin 
ACTC1                 0.097   cardiac muscle alpha actin 1 proprotein 
ACTBL2                0.097   actin, beta-like 2 
ACTG2                 0.094   actin, gamma 2 propeptide 
ARPM1                 0.082   actin related protein M1 
ACTL9                 0.073   actin-like 9 
ACTL6A                0.067   actin-like 6A isoform 2 
ACTL6A                0.067   actin-like 6A isoform 2 
ACTL6A                0.067   actin-like 6A isoform 1 
ACTL6B                0.064   actin-like 6B 
C20orf134             0.064   hypothetical protein LOC170487 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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