Guide to the Human Genome
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Name: ACTR1A Sequence: fasta or formatted (376aa) NCBI GI: 5031569
Description:

ARP1 actin-related protein 1 homolog A, centractin alpha

Referenced in:

Actin and Related Proteins
Dynein and Dynactin

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.4         24           2
 C cysteine            0.5          2           1
 D aspartate           5.6         21           1
 E glutamate           8.2         31           2
 F phenylalanine       5.3         20           2
 G glycine             7.4         28           2
 H histidine           2.4          9           1
 I isoleucine          7.4         28           1
 K lysine              6.1         23           2
 L leucine             8.2         31           2
 M methionine          2.4          9           1
 N asparagine          2.4          9           1
 P proline             5.1         19           1
 Q glutamine           2.7         10           1
 R arginine            6.6         25           2
 S serine              7.4         28           3
 T threonine           4.0         15           2
 V valine              6.6         25           2
 W tryptophan          1.1          4           1
 Y tyrosine            4.0         15           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ARP1 actin-related protein 1 homolog A, centractin al... 
ACTR1B                0.937   ARP1 actin-related protein 1 homolog B, centractin b...
ACTC1                 0.548   cardiac muscle alpha actin 1 proprotein 
ACTG1                 0.548   actin, gamma 1 propeptide 
ACTB                  0.547   beta actin 
ACTA1                 0.545   actin, alpha 1, skeletal muscle 
ACTA2                 0.544   alpha 2 actin 
ACTA2                 0.544   alpha 2 actin 
ACTG2                 0.544   actin, gamma 2 propeptide 
ACTBL2                0.537   actin, beta-like 2 
ACTBL3                0.525   PREDICTED: actin, beta-like 3 
ACTBL3                0.525   PREDICTED: kappa-actin 
ACTBL3                0.521   PREDICTED: actin, beta-like 3 
POTEE                 0.519   protein expressed in prostate, ovary, testis, and p...
LOC653269             0.519   PREDICTED: similar to protein expressed in prostate...
LOC653269             0.519   PREDICTED: similar to protein expressed in prostate,...
POTEF                 0.516   prostate, ovary, testis expressed protein on chromo...
LOC653781             0.511   PREDICTED: similar to protein expressed in prostate...
ACTR2                 0.407   actin-related protein 2 isoform b 
ACTR2                 0.404   actin-related protein 2 isoform a 
ARPM1                 0.396   actin related protein M1 
ACTRT2                0.389   actin-related protein M2 
ACTRT1                0.370   actin-related protein T1 
ACTL7A                0.332   actin-like 7A 
ACTL7B                0.322   actin-like 7B 
LOC100128069          0.321   PREDICTED: similar to alpha actin 
LOC100128069          0.312   PREDICTED: similar to Actin, alpha 1, skeletal musc...
ACTL9                 0.303   actin-like 9 
ACTR3B                0.288   actin-related protein 3-beta isoform 1 
ACTR3                 0.288   ARP3 actin-related protein 3 homolog 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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