Guide to the Human Genome
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Name: ACTG1 Sequence: fasta or formatted (375aa) NCBI GI: 4501887
Description:

actin, gamma 1 propeptide

Referenced in:

Actin and Related Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.7         29           2
 C cysteine            1.6          6           1
 D aspartate           5.3         20           2
 E glutamate           7.7         29           3
 F phenylalanine       3.5         13           1
 G glycine             7.5         28           2
 H histidine           2.4          9           2
 I isoleucine          7.7         29           2
 K lysine              5.1         19           1
 L leucine             7.2         27           2
 M methionine          4.5         17           1
 N asparagine          2.4          9           1
 P proline             5.1         19           2
 Q glutamine           3.2         12           2
 R arginine            4.8         18           1
 S serine              6.7         25           4
 T threonine           6.9         26           3
 V valine              5.6         21           1
 W tryptophan          1.1          4           1
 Y tyrosine            4.0         15           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   actin, gamma 1 propeptide 
ACTB                  0.995   beta actin 
ACTA2                 0.954   alpha 2 actin 
ACTA2                 0.954   alpha 2 actin 
ACTG2                 0.954   actin, gamma 2 propeptide 
ACTC1                 0.952   cardiac muscle alpha actin 1 proprotein 
ACTA1                 0.950   actin, alpha 1, skeletal muscle 
ACTBL2                0.935   actin, beta-like 2 
POTEE                 0.920   protein expressed in prostate, ovary, testis, and p...
ACTBL3                0.918   PREDICTED: actin, beta-like 3 
ACTBL3                0.918   PREDICTED: kappa-actin 
LOC653269             0.914   PREDICTED: similar to protein expressed in prostate...
LOC653269             0.914   PREDICTED: similar to protein expressed in prostate,...
ACTBL3                0.913   PREDICTED: actin, beta-like 3 
POTEF                 0.911   prostate, ovary, testis expressed protein on chromo...
LOC653781             0.906   PREDICTED: similar to protein expressed in prostate...
ACTR1B                0.555   ARP1 actin-related protein 1 homolog B, centractin b...
ACTR1A                0.546   ARP1 actin-related protein 1 homolog A, centractin al...
ARPM1                 0.499   actin related protein M1 
LOC100128069          0.476   PREDICTED: similar to alpha actin 
ACTRT1                0.476   actin-related protein T1 
ACTRT2                0.472   actin-related protein M2 
LOC100128069          0.461   PREDICTED: similar to Actin, alpha 1, skeletal musc...
ACTR2                 0.458   actin-related protein 2 isoform b 
ACTR2                 0.453   actin-related protein 2 isoform a 
ACTL7A                0.417   actin-like 7A 
ACTL7B                0.407   actin-like 7B 
ACTL9                 0.383   actin-like 9 
ACTL6B                0.311   actin-like 6B 
ACTR3B                0.310   actin-related protein 3-beta isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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