Guide to the Human Genome
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Name: ACTBL3 Sequence: fasta or formatted (924aa) NCBI GI: 239741786
Description:

PREDICTED: kappa-actin

Referenced in:

Actin and Related Proteins
Prostate

Other entries for this name:
alt prot [924aa] PREDICTED: actin, beta-like 3
alt prot [924aa] PREDICTED: actin, beta-like 3
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.2         57           3
 C cysteine            2.5         23           2
 D aspartate           6.1         56           3
 E glutamate           8.4         78           3
 F phenylalanine       2.4         22           1
 G glycine             6.5         60           2
 H histidine           3.2         30           3
 I isoleucine          4.9         45           2
 K lysine              8.0         74           3
 L leucine             9.1         84           3
 M methionine          3.7         34           2
 N asparagine          4.4         41           1
 P proline             4.1         38           2
 Q glutamine           4.5         42           2
 R arginine            4.2         39           2
 S serine              7.3         67           4
 T threonine           5.4         50           3
 V valine              5.1         47           2
 W tryptophan          1.0          9           2
 X unknown             0.2          2           1
 Y tyrosine            2.8         26           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: kappa-actin 
ACTBL3                0.996   PREDICTED: actin, beta-like 3 
ACTBL3                0.990   PREDICTED: actin, beta-like 3 
LOC653269             0.912   PREDICTED: similar to protein expressed in prostate...
LOC653269             0.615   PREDICTED: similar to protein expressed in prostate,...
POTEE                 0.614   protein expressed in prostate, ovary, testis, and p...
LOC653781             0.610   PREDICTED: similar to protein expressed in prostate...
POTEF                 0.609   prostate, ovary, testis expressed protein on chromo...
LOC100287399          0.482   PREDICTED: hypothetical protein XP_002343353 
LOC100288966          0.482   PREDICTED: hypothetical protein XP_002343915 isofor...
POTEB                 0.477   protein expressed in prostate, ovary, testis, and pl...
POTED                 0.477   pote protein 
LOC100288966          0.475   PREDICTED: hypothetical protein XP_002343914 isofor...
POTEC                 0.453   ANKRD26-like family B, member 2 
POTEG                 0.449   POTE ankyrin domain family, member G 
P704P                 0.446   prostate-specific P704P 
POTEH                 0.445   ANKRD26-like family C, member 3 
ACTB                  0.366   beta actin 
ACTG1                 0.364   actin, gamma 1 propeptide 
ACTA2                 0.350   alpha 2 actin 
ACTA2                 0.350   alpha 2 actin 
ACTC1                 0.349   cardiac muscle alpha actin 1 proprotein 
ACTG2                 0.348   actin, gamma 2 propeptide 
ACTA1                 0.348   actin, alpha 1, skeletal muscle 
ACTBL2                0.344   actin, beta-like 2 
POTEA                 0.318   POTE ankyrin domain family, member A isoform 2 [Homo...
POTEA                 0.274   POTE ankyrin domain family, member A isoform 1 [Homo...
ACTR1B                0.210   ARP1 actin-related protein 1 homolog B, centractin b...
ACTR1A                0.207   ARP1 actin-related protein 1 homolog A, centractin al...
ARPM1                 0.187   actin related protein M1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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