Guide to the Human Genome
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Name: LOC653269 Sequence: fasta or formatted (952aa) NCBI GI: 239741769
Description:

PREDICTED: similar to protein expressed in prostate, ovary, testis, and placenta 2

Referenced in:

Actin and Related Proteins
Prostate

Other entries for this name:
alt prot [1075aa] PREDICTED: similar to protein expressed in prostate, ovary, testi...
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.0         57           2
 C cysteine            2.9         28           2
 D aspartate           6.3         60           3
 E glutamate           7.8         74           3
 F phenylalanine       2.5         24           1
 G glycine             6.6         63           2
 H histidine           3.3         31           3
 I isoleucine          4.6         44           2
 K lysine              8.0         76           3
 L leucine             9.1         87           3
 M methionine          4.1         39           2
 N asparagine          4.2         40           1
 P proline             3.8         36           2
 Q glutamine           4.3         41           2
 R arginine            4.8         46           2
 S serine              7.5         71           4
 T threonine           5.5         52           2
 V valine              4.9         47           2
 W tryptophan          1.2         11           2
 Y tyrosine            2.6         25           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to protein expressed in prostate... 
ACTBL3                0.880   PREDICTED: actin, beta-like 3 
ACTBL3                0.879   PREDICTED: kappa-actin 
ACTBL3                0.875   PREDICTED: actin, beta-like 3 
LOC653269             0.625   PREDICTED: similar to protein expressed in prostate,...
LOC653781             0.619   PREDICTED: similar to protein expressed in prostate...
POTEE                 0.614   protein expressed in prostate, ovary, testis, and p...
POTEF                 0.609   prostate, ovary, testis expressed protein on chromo...
POTEB                 0.516   protein expressed in prostate, ovary, testis, and pl...
POTED                 0.514   pote protein 
LOC100288966          0.511   PREDICTED: hypothetical protein XP_002343914 isofor...
POTEG                 0.494   POTE ankyrin domain family, member G 
P704P                 0.493   prostate-specific P704P 
POTEH                 0.489   ANKRD26-like family C, member 3 
POTEC                 0.487   ANKRD26-like family B, member 2 
LOC100287399          0.470   PREDICTED: hypothetical protein XP_002343353 
LOC100288966          0.467   PREDICTED: hypothetical protein XP_002343915 isofor...
ACTB                  0.351   beta actin 
ACTG1                 0.349   actin, gamma 1 propeptide 
ACTA2                 0.335   alpha 2 actin 
ACTA2                 0.335   alpha 2 actin 
ACTC1                 0.335   cardiac muscle alpha actin 1 proprotein 
ACTG2                 0.334   actin, gamma 2 propeptide 
ACTA1                 0.334   actin, alpha 1, skeletal muscle 
ACTBL2                0.330   actin, beta-like 2 
POTEA                 0.311   POTE ankyrin domain family, member A isoform 2 [Homo...
POTEA                 0.264   POTE ankyrin domain family, member A isoform 1 [Homo...
ACTR1B                0.199   ARP1 actin-related protein 1 homolog B, centractin b...
ACTR1A                0.198   ARP1 actin-related protein 1 homolog A, centractin al...
ARPM1                 0.183   actin related protein M1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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