Guide to the Human Genome
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Name: ACTL9 Sequence: fasta or formatted (416aa) NCBI GI: 194097462
Description:

actin-like 9

Referenced in:

Actin and Related Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.2         34           2
 C cysteine            1.7          7           1
 D aspartate           3.8         16           1
 E glutamate           6.0         25           2
 F phenylalanine       3.8         16           1
 G glycine             7.5         31           2
 H histidine           2.6         11           2
 I isoleucine          2.2          9           1
 K lysine              3.6         15           2
 L leucine            12.5         52           2
 M methionine          1.7          7           1
 N asparagine          2.4         10           1
 P proline             7.7         32           2
 Q glutamine           5.3         22           2
 R arginine            5.8         24           1
 S serine              7.2         30           2
 T threonine           5.5         23           1
 V valine              8.7         36           3
 W tryptophan          1.0          4           1
 Y tyrosine            2.9         12           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   actin-like 9 
ACTL7A                0.363   actin-like 7A 
LOC653781             0.346   PREDICTED: similar to protein expressed in prostate...
ACTG1                 0.346   actin, gamma 1 propeptide 
ACTB                  0.346   beta actin 
LOC653269             0.343   PREDICTED: similar to protein expressed in prostate...
LOC653269             0.343   PREDICTED: similar to protein expressed in prostate,...
POTEE                 0.339   protein expressed in prostate, ovary, testis, and p...
ACTG2                 0.339   actin, gamma 2 propeptide 
ACTA2                 0.338   alpha 2 actin 
ACTA2                 0.338   alpha 2 actin 
ACTBL2                0.338   actin, beta-like 2 
ACTBL3                0.338   PREDICTED: actin, beta-like 3 
ACTBL3                0.338   PREDICTED: kappa-actin 
POTEF                 0.337   prostate, ovary, testis expressed protein on chromo...
ACTC1                 0.336   cardiac muscle alpha actin 1 proprotein 
ACTA1                 0.336   actin, alpha 1, skeletal muscle 
ACTBL3                0.335   PREDICTED: actin, beta-like 3 
ACTL7B                0.330   actin-like 7B 
ACTRT2                0.304   actin-related protein M2 
ARPM1                 0.300   actin related protein M1 
ACTR1B                0.278   ARP1 actin-related protein 1 homolog B, centractin b...
ACTRT1                0.274   actin-related protein T1 
ACTR1A                0.272   ARP1 actin-related protein 1 homolog A, centractin al...
LOC100128069          0.241   PREDICTED: similar to alpha actin 
LOC100128069          0.230   PREDICTED: similar to Actin, alpha 1, skeletal musc...
ACTR2                 0.220   actin-related protein 2 isoform b 
ACTR2                 0.219   actin-related protein 2 isoform a 
ACTR3B                0.203   actin-related protein 3-beta isoform 1 
ACTR3                 0.193   ARP3 actin-related protein 3 homolog 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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