Guide to the Human Genome
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Name: ACTB Sequence: fasta or formatted (375aa) NCBI GI: 4501885
Description:

beta actin

Referenced in:

Actin and Related Proteins
Comparative Genomics

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.7         29           2
 C cysteine            1.6          6           1
 D aspartate           6.1         23           3
 E glutamate           6.9         26           2
 F phenylalanine       3.5         13           1
 G glycine             7.5         28           2
 H histidine           2.4          9           2
 I isoleucine          7.5         28           2
 K lysine              5.1         19           1
 L leucine             7.2         27           2
 M methionine          4.5         17           1
 N asparagine          2.4          9           1
 P proline             5.1         19           2
 Q glutamine           3.2         12           2
 R arginine            4.8         18           1
 S serine              6.7         25           4
 T threonine           6.9         26           3
 V valine              5.9         22           2
 W tryptophan          1.1          4           1
 Y tyrosine            4.0         15           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   beta actin 
ACTG1                 0.993   actin, gamma 1 propeptide 
ACTA2                 0.952   alpha 2 actin 
ACTA2                 0.952   alpha 2 actin 
ACTC1                 0.950   cardiac muscle alpha actin 1 proprotein 
ACTG2                 0.947   actin, gamma 2 propeptide 
ACTA1                 0.947   actin, alpha 1, skeletal muscle 
ACTBL2                0.935   actin, beta-like 2 
POTEE                 0.924   protein expressed in prostate, ovary, testis, and p...
ACTBL3                0.922   PREDICTED: actin, beta-like 3 
ACTBL3                0.922   PREDICTED: kappa-actin 
LOC653269             0.918   PREDICTED: similar to protein expressed in prostate...
LOC653269             0.918   PREDICTED: similar to protein expressed in prostate,...
ACTBL3                0.918   PREDICTED: actin, beta-like 3 
POTEF                 0.916   prostate, ovary, testis expressed protein on chromo...
LOC653781             0.910   PREDICTED: similar to protein expressed in prostate...
ACTR1B                0.553   ARP1 actin-related protein 1 homolog B, centractin b...
ACTR1A                0.544   ARP1 actin-related protein 1 homolog A, centractin al...
ARPM1                 0.497   actin related protein M1 
LOC100128069          0.477   PREDICTED: similar to alpha actin 
ACTRT1                0.477   actin-related protein T1 
ACTRT2                0.473   actin-related protein M2 
LOC100128069          0.462   PREDICTED: similar to Actin, alpha 1, skeletal musc...
ACTR2                 0.458   actin-related protein 2 isoform b 
ACTR2                 0.452   actin-related protein 2 isoform a 
ACTL7A                0.416   actin-like 7A 
ACTL7B                0.405   actin-like 7B 
ACTL9                 0.383   actin-like 9 
ACTL6B                0.311   actin-like 6B 
ACTR3B                0.309   actin-related protein 3-beta isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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