Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: ACTL6A Sequence: fasta or formatted (387aa) NCBI GI: 30089997
Description:

actin-like 6A isoform 2

Referenced in:

Actin and Related Proteins

Other entries for this name:
alt mRNA [387aa] actin-like 6A isoform 2
alt prot [429aa] actin-like 6A isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.9         23           2
 C cysteine            2.1          8           1
 D aspartate           4.9         19           2
 E glutamate           6.7         26           2
 F phenylalanine       3.6         14           2
 G glycine             7.5         29           2
 H histidine           2.3          9           1
 I isoleucine          5.4         21           1
 K lysine              5.2         20           1
 L leucine             7.8         30           1
 M methionine          4.1         16           1
 N asparagine          4.7         18           2
 P proline             5.2         20           2
 Q glutamine           4.7         18           2
 R arginine            4.7         18           2
 S serine              7.2         28           2
 T threonine           6.5         25           2
 V valine              7.0         27           2
 W tryptophan          1.6          6           1
 Y tyrosine            3.1         12           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   actin-like 6A isoform 2 
ACTL6A                1.000   actin-like 6A isoform 2 
ACTL6A                1.000   actin-like 6A isoform 1 
ACTL6B                0.846   actin-like 6B 
ACTC1                 0.266   cardiac muscle alpha actin 1 proprotein 
ACTA1                 0.265   actin, alpha 1, skeletal muscle 
ACTA2                 0.263   alpha 2 actin 
ACTA2                 0.263   alpha 2 actin 
ACTB                  0.263   beta actin 
ACTG1                 0.263   actin, gamma 1 propeptide 
ACTG2                 0.261   actin, gamma 2 propeptide 
ACTBL2                0.258   actin, beta-like 2 
ACTBL3                0.240   PREDICTED: actin, beta-like 3 
ACTBL3                0.240   PREDICTED: kappa-actin 
ACTBL3                0.236   PREDICTED: actin, beta-like 3 
LOC653781             0.233   PREDICTED: similar to protein expressed in prostate...
LOC653269             0.233   PREDICTED: similar to protein expressed in prostate...
LOC653269             0.233   PREDICTED: similar to protein expressed in prostate,...
POTEF                 0.232   prostate, ovary, testis expressed protein on chromo...
POTEE                 0.231   protein expressed in prostate, ovary, testis, and p...
ACTR1B                0.224   ARP1 actin-related protein 1 homolog B, centractin b...
ACTR1A                0.215   ARP1 actin-related protein 1 homolog A, centractin al...
ACTRT2                0.192   actin-related protein M2 
ACTRT1                0.186   actin-related protein T1 
ARPM1                 0.180   actin related protein M1 
ACTL9                 0.179   actin-like 9 
ACTL7B                0.172   actin-like 7B 
ACTL7A                0.163   actin-like 7A 
ACTR3B                0.159   actin-related protein 3-beta isoform 1 
LOC100128069          0.155   PREDICTED: similar to alpha actin 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press