Guide to the Human Genome
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Name: LOC653269 Sequence: fasta or formatted (1075aa) NCBI GI: 88953571
Description:

PREDICTED: similar to protein expressed in prostate, ovary, testis, and placenta 2 isoform 2

Referenced in:

Actin and Related Proteins
Prostate

Other entries for this name:
alt prot [952aa] PREDICTED: similar to protein expressed in prostate, ovary, testi...
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.5         59           2
 C cysteine            2.7         29           2
 D aspartate           6.2         67           3
 E glutamate           8.8         95           3
 F phenylalanine       2.4         26           1
 G glycine             6.6         71           2
 H histidine           3.1         33           3
 I isoleucine          4.5         48           2
 K lysine              8.0         86           3
 L leucine             8.9         96           3
 M methionine          3.9         42           2
 N asparagine          4.8         52           2
 P proline             4.0         43           2
 Q glutamine           4.6         49           2
 R arginine            4.8         52           2
 S serine              7.7         83           4
 T threonine           5.1         55           2
 V valine              4.7         50           2
 W tryptophan          1.0         11           2
 Y tyrosine            2.6         28           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to protein expressed in prostate,... 
POTEE                 0.966   protein expressed in prostate, ovary, testis, and p...
POTEF                 0.965   prostate, ovary, testis expressed protein on chromo...
LOC653781             0.944   PREDICTED: similar to protein expressed in prostate...
LOC653269             0.553   PREDICTED: similar to protein expressed in prostate...
ACTBL3                0.524   PREDICTED: kappa-actin 
ACTBL3                0.524   PREDICTED: actin, beta-like 3 
ACTBL3                0.521   PREDICTED: actin, beta-like 3 
POTEG                 0.399   POTE ankyrin domain family, member G 
P704P                 0.398   prostate-specific P704P 
POTEH                 0.394   ANKRD26-like family C, member 3 
POTEB                 0.394   protein expressed in prostate, ovary, testis, and pl...
POTEC                 0.390   ANKRD26-like family B, member 2 
POTED                 0.387   pote protein 
LOC100288966          0.386   PREDICTED: hypothetical protein XP_002343914 isofor...
LOC100287399          0.354   PREDICTED: hypothetical protein XP_002343353 
LOC100288966          0.347   PREDICTED: hypothetical protein XP_002343915 isofor...
ACTB                  0.311   beta actin 
ACTG1                 0.309   actin, gamma 1 propeptide 
ACTA2                 0.297   alpha 2 actin 
ACTA2                 0.297   alpha 2 actin 
ACTC1                 0.296   cardiac muscle alpha actin 1 proprotein 
ACTG2                 0.295   actin, gamma 2 propeptide 
ACTA1                 0.295   actin, alpha 1, skeletal muscle 
ACTBL2                0.292   actin, beta-like 2 
POTEA                 0.275   POTE ankyrin domain family, member A isoform 2 [Homo...
POTEA                 0.233   POTE ankyrin domain family, member A isoform 1 [Homo...
ACTR1B                0.176   ARP1 actin-related protein 1 homolog B, centractin b...
ACTR1A                0.175   ARP1 actin-related protein 1 homolog A, centractin al...
ARPM1                 0.162   actin related protein M1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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